Atomistry » Iron » PDB 1xvd-1y4q » 1xvf
Atomistry »
  Iron »
    PDB 1xvd-1y4q »
      1xvf »

Iron in PDB 1xvf: Soluble Methane Monooxygenase Hydroxylase: Chloropropanol Soaked Structure

Enzymatic activity of Soluble Methane Monooxygenase Hydroxylase: Chloropropanol Soaked Structure

All present enzymatic activity of Soluble Methane Monooxygenase Hydroxylase: Chloropropanol Soaked Structure:
1.14.13.25;

Protein crystallography data

The structure of Soluble Methane Monooxygenase Hydroxylase: Chloropropanol Soaked Structure, PDB code: 1xvf was solved by M.H.Sazinsky, S.J.Lippard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.98 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 70.829, 171.467, 221.081, 90.00, 90.00, 90.00
R / Rfree (%) 20.2 / 23

Other elements in 1xvf:

The structure of Soluble Methane Monooxygenase Hydroxylase: Chloropropanol Soaked Structure also contains other interesting chemical elements:

Chlorine (Cl) 8 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Soluble Methane Monooxygenase Hydroxylase: Chloropropanol Soaked Structure (pdb code 1xvf). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Soluble Methane Monooxygenase Hydroxylase: Chloropropanol Soaked Structure, PDB code: 1xvf:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 1xvf

Go back to Iron Binding Sites List in 1xvf
Iron binding site 1 out of 4 in the Soluble Methane Monooxygenase Hydroxylase: Chloropropanol Soaked Structure


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Soluble Methane Monooxygenase Hydroxylase: Chloropropanol Soaked Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1170

b:28.4
occ:1.00
 O A:HOH2004 1.8 25.1 1.0
OE2 A:GLU209 1.9 31.4 1.0
ND1 A:HIS246 2.1 28.1 1.0
O1 A:3CL1302 2.3 63.4 0.5
OE1 A:GLU243 2.3 35.8 1.0
O1 A:3CL2002 2.3 62.6 0.5
OE1 A:GLU144 2.3 22.7 1.0
CE1 A:HIS246 2.9 28.1 1.0
CD A:GLU209 3.0 33.1 1.0
CD A:GLU243 3.1 38.5 1.0
FE A:FE1171 3.1 23.1 1.0
CG A:HIS246 3.2 26.3 1.0
OE2 A:GLU243 3.3 41.0 1.0
CD A:GLU144 3.3 22.3 1.0
C2 A:3CL1302 3.5 63.4 0.5
C2 A:3CL2002 3.5 62.6 0.5
OE2 A:GLU144 3.5 22.3 1.0
NE2 A:GLN140 3.7 23.0 1.0
CB A:HIS246 3.8 27.3 1.0
OE1 A:GLU209 3.8 32.7 1.0
CG A:GLU209 3.8 32.5 1.0
NE2 A:HIS246 4.1 25.9 1.0
O A:HOH2003 4.2 30.0 1.0
CD2 A:HIS246 4.3 23.9 1.0
C3 A:3CL1302 4.3 63.4 0.5
C3 A:3CL2002 4.4 62.6 0.5
CD A:GLN140 4.5 24.6 1.0
CG A:GLU243 4.5 35.8 1.0
ND1 A:HIS147 4.6 17.1 1.0
CE1 A:HIS147 4.6 17.1 1.0
CG A:GLU144 4.7 21.1 1.0
CG A:GLN140 4.8 23.0 1.0
CB A:GLU209 4.8 33.0 1.0
OE1 A:GLU114 4.9 22.4 1.0

Iron binding site 2 out of 4 in 1xvf

Go back to Iron Binding Sites List in 1xvf
Iron binding site 2 out of 4 in the Soluble Methane Monooxygenase Hydroxylase: Chloropropanol Soaked Structure


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Soluble Methane Monooxygenase Hydroxylase: Chloropropanol Soaked Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1171

b:23.1
occ:1.00
 O A:HOH2004 2.0 25.1 1.0
OE1 A:GLU114 2.0 22.4 1.0
OE2 A:GLU144 2.1 22.3 1.0
ND1 A:HIS147 2.2 17.1 1.0
O A:HOH2003 2.2 30.0 1.0
O1 A:3CL1302 2.3 63.4 0.5
O1 A:3CL2002 2.3 62.6 0.5
CD A:GLU114 3.0 21.2 1.0
CE1 A:HIS147 3.0 17.1 1.0
CD A:GLU144 3.1 22.3 1.0
FE A:FE1170 3.1 28.4 1.0
CG A:HIS147 3.3 17.8 1.0
OE2 A:GLU114 3.3 22.7 1.0
C2 A:3CL2002 3.4 62.6 0.5
OE1 A:GLU144 3.4 22.7 1.0
C2 A:3CL1302 3.4 63.4 0.5
CB A:HIS147 3.7 18.0 1.0
C3 A:3CL1302 3.7 63.4 0.5
C3 A:3CL2002 3.8 62.6 0.5
OE2 A:GLU243 4.0 41.0 1.0
NE2 A:HIS147 4.2 19.3 1.0
CE1 A:HIS246 4.3 28.1 1.0
CD2 A:HIS147 4.3 18.4 1.0
CG A:GLU114 4.4 19.3 1.0
ND1 A:HIS246 4.4 28.1 1.0
OE1 A:GLU243 4.5 35.8 1.0
CG A:GLU144 4.5 21.1 1.0
OE2 A:GLU209 4.6 31.4 1.0
CG2 A:ILE239 4.7 22.8 1.0
CA A:GLU144 4.7 19.8 1.0
CB A:GLU114 4.7 18.0 1.0
CD A:GLU243 4.7 38.5 1.0
CA A:GLU114 4.7 23.5 1.0
CB A:GLU144 4.9 18.8 1.0

Iron binding site 3 out of 4 in 1xvf

Go back to Iron Binding Sites List in 1xvf
Iron binding site 3 out of 4 in the Soluble Methane Monooxygenase Hydroxylase: Chloropropanol Soaked Structure


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Soluble Methane Monooxygenase Hydroxylase: Chloropropanol Soaked Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1174

b:28.2
occ:1.00
 O B:HOH1307 1.7 25.9 1.0
OE1 B:GLU209 2.0 30.2 1.0
ND1 B:HIS246 2.1 30.5 1.0
OE1 B:GLU243 2.3 35.4 1.0
OE1 B:GLU144 2.4 21.8 1.0
O1 B:3CL1303 2.5 45.7 1.0
CE1 B:HIS246 2.9 30.4 1.0
CD B:GLU209 3.0 31.0 1.0
FE B:FE1175 3.1 22.7 1.0
CD B:GLU144 3.3 18.7 1.0
CG B:HIS246 3.3 29.4 1.0
CD B:GLU243 3.4 38.3 1.0
OE2 B:GLU144 3.5 20.7 1.0
O B:HOH1537 3.5 46.2 1.0
CG B:GLU209 3.7 30.9 1.0
OE2 B:GLU243 3.7 41.2 1.0
C2 B:3CL1303 3.8 45.7 1.0
CB B:HIS246 3.8 29.0 1.0
C3 B:3CL1303 3.9 45.7 1.0
OE2 B:GLU209 3.9 29.1 1.0
NE2 B:GLN140 4.0 30.2 1.0
NE2 B:HIS246 4.1 30.0 1.0
O B:HOH1306 4.1 20.2 1.0
CD2 B:HIS246 4.3 28.9 1.0
ND1 B:HIS147 4.5 16.9 1.0
CE1 B:HIS147 4.5 16.9 1.0
CD B:GLN140 4.6 31.3 1.0
CG B:GLU144 4.7 19.3 1.0
CG B:GLU243 4.7 36.2 1.0
CG B:GLN140 4.7 30.1 1.0
OE1 B:GLU114 4.8 21.3 1.0
CB B:GLU209 4.9 31.2 1.0

Iron binding site 4 out of 4 in 1xvf

Go back to Iron Binding Sites List in 1xvf
Iron binding site 4 out of 4 in the Soluble Methane Monooxygenase Hydroxylase: Chloropropanol Soaked Structure


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Soluble Methane Monooxygenase Hydroxylase: Chloropropanol Soaked Structure within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1175

b:22.7
occ:1.00
 O B:HOH1307 1.9 25.9 1.0
OE1 B:GLU114 2.0 21.3 1.0
ND1 B:HIS147 2.1 16.9 1.0
O1 B:3CL1303 2.1 45.7 1.0
OE2 B:GLU144 2.2 20.7 1.0
O B:HOH1306 2.3 20.2 1.0
CE1 B:HIS147 3.0 16.9 1.0
CD B:GLU114 3.0 20.9 1.0
FE B:FE1174 3.1 28.2 1.0
C2 B:3CL1303 3.1 45.7 1.0
CD B:GLU144 3.1 18.7 1.0
CG B:HIS147 3.2 14.6 1.0
OE2 B:GLU114 3.4 24.2 1.0
OE1 B:GLU144 3.4 21.8 1.0
CB B:HIS147 3.6 17.2 1.0
O B:HOH1537 3.8 46.2 1.0
C3 B:3CL1303 4.1 45.7 1.0
NE2 B:HIS147 4.1 19.4 1.0
CE1 B:HIS246 4.2 30.4 1.0
OE2 B:GLU243 4.2 41.2 1.0
CD2 B:HIS147 4.3 15.9 1.0
CG B:GLU114 4.4 21.1 1.0
ND1 B:HIS246 4.4 30.5 1.0
OE1 B:GLU243 4.5 35.4 1.0
CG B:GLU144 4.5 19.3 1.0
CA B:GLU144 4.6 20.0 1.0
CG2 B:ILE239 4.6 14.9 1.0
OE1 B:GLU209 4.6 30.2 1.0
CB B:GLU114 4.7 19.1 1.0
CA B:GLU114 4.8 21.2 1.0
CD B:GLU243 4.8 38.3 1.0
CB B:GLU144 4.9 17.4 1.0

Reference:

M.H.Sazinsky, S.J.Lippard. Product Bound Structures of the Soluble Methane Monooxygenase Hydroxylase From Methylococcus Capsulatus (Bath): Protein Motion in the Alpha-Subunit J.Am.Chem.Soc. V. 127 5814 2005.
ISSN: ISSN 0002-7863
PubMed: 15839679
DOI: 10.1021/JA044099B
Page generated: Sat Aug 3 17:04:12 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy