Iron in PDB 1y0z: X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G21360

The structure of X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G21360, PDB code: 1y0z was solved by G.E.Wesenberg, G.N.Phillips Jr., E.Bitto, C.A.Bingman, S.T.M.Allard, Center For Eukaryotic Structural Genomics (Cesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.63 / 2.40
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	145.276, 61.094, 114.681, 90.00, 121.68, 90.00
R / Rfree (%)	19.3 / 24.1

The binding sites of Iron atom in the X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G21360 (pdb code 1y0z). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G21360, PDB code: 1y0z:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G21360


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G21360 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe901 b:40.0 occ:1.00 NE2 A:HIS313 2.3 8.3 1.0 O A:HOH1133 2.3 29.1 1.0 NE2 A:HIS120 2.4 21.8 1.0 OE1 A:GLU122 2.6 32.8 1.0 CE1 A:HIS120 3.0 21.8 1.0 O A:HOH1179 3.0 35.6 1.0 CE1 A:HIS313 3.2 8.3 1.0 CD2 A:HIS313 3.3 8.3 1.0 CD A:GLU122 3.5 32.8 1.0 CD2 A:HIS120 3.6 21.8 1.0 OE2 A:GLU122 3.7 32.8 1.0 ND1 A:HIS120 4.2 21.8 1.0 ND1 A:HIS313 4.3 8.3 1.0 CG A:HIS313 4.4 8.3 1.0 CG A:HIS120 4.5 21.8 1.0 O A:HOH1135 4.5 37.8 1.0 O A:HOH1134 4.6 30.6 1.0 O A:HOH1214 4.6 49.0 1.0 CZ A:PHE135 4.8 21.2 1.0 CG A:GLU122 4.9 32.8 1.0

Iron binding site 2 out of 2 in the X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G21360


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of X-Ray Structure of Gene Product From Arabidopsis Thaliana AT3G21360 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe902 b:25.2 occ:1.00 O B:HOH1176 2.0 19.9 1.0 NE2 B:HIS120 2.2 12.9 1.0 O B:HOH1175 2.2 16.6 1.0 NE2 B:HIS313 2.3 9.2 1.0 OE1 B:GLU122 2.3 22.1 1.0 CE1 B:HIS120 2.9 12.9 1.0 CE1 B:HIS313 3.1 9.2 1.0 CD2 B:HIS313 3.4 9.2 1.0 CD B:GLU122 3.4 22.1 1.0 CD2 B:HIS120 3.4 12.9 1.0 OE2 B:GLU122 3.7 22.1 1.0 O B:HOH1177 4.1 38.7 1.0 ND1 B:HIS120 4.1 12.9 1.0 ND1 B:HIS313 4.2 9.2 1.0 CG B:HIS120 4.4 12.9 1.0 CG B:HIS313 4.4 9.2 1.0 O B:HOH1186 4.4 35.3 1.0 CG B:GLU122 4.7 22.1 1.0 CZ B:PHE135 4.9 15.7 1.0 O B:HOH1062 5.0 43.9 1.0 CB B:GLU122 5.0 22.1 1.0

E.Bitto, C.A.Bingman, S.T.Allard, G.E.Wesenberg, D.J.Aceti, R.L.Wrobel, R.O.Frederick, H.Sreenath, F.C.Vojtik, W.B.Jeon, C.S.Newman, J.Primm, M.R.Sussman, B.G.Fox, J.L.Markley, G.N.Phillips. The Structure at 2.4 A Resolution of the Protein From Gene Locus AT3G21360, A Putative Fe(II)/2-Oxoglutarate-Dependent Enzyme From Arabidopsis Thaliana. Acta Crystallogr.,Sect.F V. 61 469 2005.
ISSN: ESSN 1744-3091
PubMed: 16511070
DOI: 10.1107/S1744309105011565