Atomistry » Iron » PDB 1yqp-1zj9 » 1yzr
Atomistry »
  Iron »
    PDB 1yqp-1zj9 »
      1yzr »

Iron in PDB 1yzr: Manganese Peroxidase-Sm(III) Complex

Enzymatic activity of Manganese Peroxidase-Sm(III) Complex

All present enzymatic activity of Manganese Peroxidase-Sm(III) Complex:
1.11.1.13;

Protein crystallography data

The structure of Manganese Peroxidase-Sm(III) Complex, PDB code: 1yzr was solved by M.Sundaramoorthy, H.L.Youngs, M.H.Gold, T.L.Poulos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.60
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 160.667, 45.293, 52.850, 90.00, 97.12, 90.00
R / Rfree (%) 15.4 / 16.3

Other elements in 1yzr:

The structure of Manganese Peroxidase-Sm(III) Complex also contains other interesting chemical elements:

Samarium (Sm) 1 atom
Calcium (Ca) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Manganese Peroxidase-Sm(III) Complex (pdb code 1yzr). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Manganese Peroxidase-Sm(III) Complex, PDB code: 1yzr:

Iron binding site 1 out of 1 in 1yzr

Go back to Iron Binding Sites List in 1yzr
Iron binding site 1 out of 1 in the Manganese Peroxidase-Sm(III) Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Manganese Peroxidase-Sm(III) Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe396

b:16.4
occ:1.00
FE A:HEM396 0.0 16.4 1.0
O A:HOH1138 2.0 27.9 1.0
ND A:HEM396 2.0 14.4 1.0
NC A:HEM396 2.0 16.8 1.0
NA A:HEM396 2.0 16.8 1.0
NB A:HEM396 2.0 14.5 1.0
NE2 A:HIS173 2.1 14.9 1.0
CE1 A:HIS173 3.0 13.1 1.0
C1D A:HEM396 3.0 12.9 1.0
C4C A:HEM396 3.0 18.9 1.0
C4D A:HEM396 3.0 16.4 1.0
C1B A:HEM396 3.1 20.5 1.0
C4A A:HEM396 3.1 15.0 1.0
C1C A:HEM396 3.1 18.7 1.0
C1A A:HEM396 3.1 15.0 1.0
C4B A:HEM396 3.1 18.3 1.0
CD2 A:HIS173 3.2 10.7 1.0
CHD A:HEM396 3.4 11.2 1.0
CHA A:HEM396 3.4 13.3 1.0
CHB A:HEM396 3.4 20.1 1.0
CHC A:HEM396 3.5 20.8 1.0
O A:HOH1553 3.8 21.0 0.5
ND1 A:HIS173 4.2 15.0 1.0
C3D A:HEM396 4.3 13.9 1.0
C2D A:HEM396 4.3 12.8 1.0
C3C A:HEM396 4.3 18.3 1.0
C2C A:HEM396 4.3 22.1 1.0
C2A A:HEM396 4.3 13.6 1.0
C2B A:HEM396 4.3 14.4 1.0
CG A:HIS173 4.3 9.9 1.0
C3A A:HEM396 4.3 15.1 1.0
C3B A:HEM396 4.3 16.4 1.0
O A:HOH1553 4.6 22.4 0.5
NE A:ARG42 4.9 21.6 1.0
CE2 A:PHE190 5.0 15.7 1.0
CG A:ARG42 5.0 14.3 1.0

Reference:

M.Sundaramoorthy, H.L.Youngs, M.H.Gold, T.L.Poulos. High-Resolution Crystal Structure of Manganese Peroxidase: Substrate and Inhibitor Complexes. Biochemistry V. 44 6463 2005.
ISSN: ISSN 0006-2960
PubMed: 15850380
DOI: 10.1021/BI047318E
Page generated: Sat Aug 3 18:08:27 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy