Iron in PDB 2a5h: 2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate).
Enzymatic activity of 2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate).
All present enzymatic activity of 2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate).:
5.4.3.2;
Protein crystallography data
The structure of 2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate)., PDB code: 2a5h
was solved by
B.W.Lepore,
F.J.Ruzicka,
P.A.Frey,
D.Ringe,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
50.00 /
2.10
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
118.890,
92.926,
177.735,
90.00,
96.74,
90.00
|
R / Rfree (%)
|
18.4 /
22.5
|
Other elements in 2a5h:
The structure of 2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate). also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Iron atom in the 2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate).
(pdb code 2a5h). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the
2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate)., PDB code: 2a5h:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 16 in 2a5h
Go back to
Iron Binding Sites List in 2a5h
Iron binding site 1 out
of 16 in the 2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate).
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of 2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate). within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe418
b:26.3
occ:1.00
|
FE1
|
A:SF4418
|
0.0
|
26.3
|
1.0
|
N
|
A:SAM417
|
2.0
|
26.7
|
1.0
|
OXT
|
A:SAM417
|
2.0
|
27.2
|
1.0
|
S3
|
A:SF4418
|
2.2
|
26.1
|
1.0
|
S4
|
A:SF4418
|
2.2
|
29.6
|
1.0
|
S2
|
A:SF4418
|
2.3
|
28.6
|
1.0
|
FE3
|
A:SF4418
|
2.5
|
28.0
|
1.0
|
FE2
|
A:SF4418
|
2.6
|
24.7
|
1.0
|
FE4
|
A:SF4418
|
2.6
|
27.7
|
1.0
|
C
|
A:SAM417
|
3.0
|
28.6
|
1.0
|
CA
|
A:SAM417
|
3.0
|
31.1
|
1.0
|
SD
|
A:SAM417
|
3.1
|
30.9
|
0.8
|
CG
|
A:SAM417
|
3.6
|
31.7
|
1.0
|
S1
|
A:SF4418
|
3.6
|
29.8
|
1.0
|
CB
|
A:SAM417
|
3.9
|
30.6
|
1.0
|
O
|
A:SAM417
|
4.1
|
28.1
|
1.0
|
ND1
|
A:HIS230
|
4.5
|
30.2
|
1.0
|
CE
|
A:SAM417
|
4.5
|
36.3
|
1.0
|
O
|
A:GLY171
|
4.5
|
36.0
|
1.0
|
SG
|
A:CYS125
|
4.6
|
36.5
|
1.0
|
SG
|
A:CYS129
|
4.7
|
31.5
|
1.0
|
SG
|
A:CYS132
|
4.7
|
31.9
|
1.0
|
C5'
|
A:SAM417
|
4.9
|
28.7
|
1.0
|
CE1
|
A:HIS230
|
4.9
|
27.5
|
1.0
|
C3'
|
A:SAM417
|
4.9
|
27.9
|
1.0
|
C
|
A:GLY171
|
4.9
|
37.5
|
1.0
|
|
Iron binding site 2 out
of 16 in 2a5h
Go back to
Iron Binding Sites List in 2a5h
Iron binding site 2 out
of 16 in the 2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate).
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of 2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate). within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe418
b:24.7
occ:1.00
|
FE2
|
A:SF4418
|
0.0
|
24.7
|
1.0
|
S1
|
A:SF4418
|
2.1
|
29.8
|
1.0
|
S4
|
A:SF4418
|
2.1
|
29.6
|
1.0
|
S3
|
A:SF4418
|
2.2
|
26.1
|
1.0
|
SG
|
A:CYS132
|
2.3
|
31.9
|
1.0
|
FE4
|
A:SF4418
|
2.5
|
27.7
|
1.0
|
FE1
|
A:SF4418
|
2.6
|
26.3
|
1.0
|
FE3
|
A:SF4418
|
2.6
|
28.0
|
1.0
|
CB
|
A:CYS132
|
3.2
|
32.3
|
1.0
|
S2
|
A:SF4418
|
3.7
|
28.6
|
1.0
|
CA
|
A:CYS132
|
4.0
|
31.4
|
1.0
|
OXT
|
A:SAM417
|
4.3
|
27.2
|
1.0
|
N
|
A:SAM417
|
4.3
|
26.7
|
1.0
|
SD
|
A:SAM417
|
4.5
|
30.9
|
0.8
|
SG
|
A:CYS125
|
4.5
|
36.5
|
1.0
|
CB
|
A:ALA138
|
4.6
|
38.6
|
1.0
|
SG
|
A:CYS129
|
4.6
|
31.5
|
1.0
|
CB
|
A:CYS129
|
4.7
|
30.1
|
1.0
|
CE
|
A:SAM417
|
4.8
|
36.3
|
1.0
|
C
|
A:CYS132
|
4.9
|
31.6
|
1.0
|
|
Iron binding site 3 out
of 16 in 2a5h
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Iron Binding Sites List in 2a5h
Iron binding site 3 out
of 16 in the 2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate).
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of 2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate). within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe418
b:28.0
occ:1.00
|
FE3
|
A:SF4418
|
0.0
|
28.0
|
1.0
|
S4
|
A:SF4418
|
2.1
|
29.6
|
1.0
|
S1
|
A:SF4418
|
2.1
|
29.8
|
1.0
|
S2
|
A:SF4418
|
2.2
|
28.6
|
1.0
|
SG
|
A:CYS125
|
2.3
|
36.5
|
1.0
|
FE1
|
A:SF4418
|
2.5
|
26.3
|
1.0
|
FE4
|
A:SF4418
|
2.6
|
27.7
|
1.0
|
FE2
|
A:SF4418
|
2.6
|
24.7
|
1.0
|
N
|
A:SAM417
|
3.3
|
26.7
|
1.0
|
CB
|
A:CYS125
|
3.4
|
38.0
|
1.0
|
S3
|
A:SF4418
|
3.6
|
26.1
|
1.0
|
CA
|
A:GLY171
|
4.3
|
38.8
|
1.0
|
OXT
|
A:SAM417
|
4.3
|
27.2
|
1.0
|
C
|
A:GLY171
|
4.4
|
37.5
|
1.0
|
SG
|
A:CYS132
|
4.6
|
31.9
|
1.0
|
O
|
A:HOH664
|
4.6
|
34.3
|
1.0
|
O
|
A:MSE127
|
4.6
|
35.9
|
1.0
|
SG
|
A:CYS129
|
4.7
|
31.5
|
1.0
|
CB
|
A:ALA138
|
4.7
|
38.6
|
1.0
|
O
|
A:GLY171
|
4.7
|
36.0
|
1.0
|
CA
|
A:CYS125
|
4.7
|
38.4
|
1.0
|
CA
|
A:SAM417
|
4.8
|
31.1
|
1.0
|
CD2
|
A:TYR128
|
4.8
|
40.4
|
1.0
|
N
|
A:ASP172
|
4.9
|
37.0
|
1.0
|
|
Iron binding site 4 out
of 16 in 2a5h
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Iron Binding Sites List in 2a5h
Iron binding site 4 out
of 16 in the 2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate).
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of 2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate). within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe418
b:27.7
occ:1.00
|
FE4
|
A:SF4418
|
0.0
|
27.7
|
1.0
|
S1
|
A:SF4418
|
2.1
|
29.8
|
1.0
|
S3
|
A:SF4418
|
2.1
|
26.1
|
1.0
|
S2
|
A:SF4418
|
2.1
|
28.6
|
1.0
|
SG
|
A:CYS129
|
2.3
|
31.5
|
1.0
|
FE2
|
A:SF4418
|
2.5
|
24.7
|
1.0
|
FE3
|
A:SF4418
|
2.6
|
28.0
|
1.0
|
FE1
|
A:SF4418
|
2.6
|
26.3
|
1.0
|
CB
|
A:CYS129
|
3.2
|
30.1
|
1.0
|
OXT
|
A:SAM417
|
3.6
|
27.2
|
1.0
|
S4
|
A:SF4418
|
3.7
|
29.6
|
1.0
|
N
|
A:CYS129
|
3.8
|
34.0
|
1.0
|
N
|
A:SAM417
|
4.2
|
26.7
|
1.0
|
CA
|
A:CYS129
|
4.2
|
32.5
|
1.0
|
O
|
A:MSE127
|
4.2
|
35.9
|
1.0
|
CD
|
A:ARG202
|
4.3
|
30.1
|
1.0
|
O
|
A:HOH664
|
4.3
|
34.3
|
1.0
|
CE1
|
A:HIS230
|
4.4
|
27.5
|
1.0
|
ND1
|
A:HIS230
|
4.5
|
30.2
|
1.0
|
SG
|
A:CYS132
|
4.5
|
31.9
|
1.0
|
CB
|
A:CYS132
|
4.6
|
32.3
|
1.0
|
SG
|
A:CYS125
|
4.7
|
36.5
|
1.0
|
C
|
A:SAM417
|
4.9
|
28.6
|
1.0
|
C
|
A:TYR128
|
5.0
|
36.3
|
1.0
|
|
Iron binding site 5 out
of 16 in 2a5h
Go back to
Iron Binding Sites List in 2a5h
Iron binding site 5 out
of 16 in the 2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate).
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of 2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate). within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe418
b:36.4
occ:1.00
|
FE1
|
B:SF4418
|
0.0
|
36.4
|
1.0
|
N
|
B:SAM417
|
2.0
|
36.5
|
1.0
|
OXT
|
B:SAM417
|
2.0
|
36.1
|
1.0
|
S3
|
B:SF4418
|
2.1
|
36.2
|
1.0
|
S4
|
B:SF4418
|
2.2
|
38.7
|
1.0
|
S2
|
B:SF4418
|
2.3
|
40.1
|
1.0
|
FE2
|
B:SF4418
|
2.5
|
35.8
|
1.0
|
FE3
|
B:SF4418
|
2.6
|
39.6
|
1.0
|
FE4
|
B:SF4418
|
2.6
|
38.8
|
1.0
|
C
|
B:SAM417
|
3.0
|
36.8
|
1.0
|
CA
|
B:SAM417
|
3.0
|
39.7
|
1.0
|
SD
|
B:SAM417
|
3.4
|
40.2
|
0.8
|
S1
|
B:SF4418
|
3.6
|
40.6
|
1.0
|
CG
|
B:SAM417
|
3.7
|
39.9
|
1.0
|
CB
|
B:SAM417
|
3.9
|
38.7
|
1.0
|
O
|
B:SAM417
|
4.2
|
35.3
|
1.0
|
O
|
B:GLY171
|
4.4
|
46.0
|
1.0
|
ND1
|
B:HIS230
|
4.4
|
38.8
|
1.0
|
SG
|
B:CYS125
|
4.5
|
47.3
|
1.0
|
CE
|
B:SAM417
|
4.7
|
44.0
|
1.0
|
SG
|
B:CYS129
|
4.7
|
43.8
|
1.0
|
SG
|
B:CYS132
|
4.7
|
42.2
|
1.0
|
CE1
|
B:HIS230
|
4.9
|
35.3
|
1.0
|
C
|
B:GLY171
|
4.9
|
47.6
|
1.0
|
CB
|
B:ARG202
|
4.9
|
40.3
|
1.0
|
C3'
|
B:SAM417
|
5.0
|
35.0
|
1.0
|
|
Iron binding site 6 out
of 16 in 2a5h
Go back to
Iron Binding Sites List in 2a5h
Iron binding site 6 out
of 16 in the 2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate).
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of 2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate). within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe418
b:35.8
occ:1.00
|
FE2
|
B:SF4418
|
0.0
|
35.8
|
1.0
|
S1
|
B:SF4418
|
2.1
|
40.6
|
1.0
|
S4
|
B:SF4418
|
2.2
|
38.7
|
1.0
|
S3
|
B:SF4418
|
2.2
|
36.2
|
1.0
|
SG
|
B:CYS132
|
2.3
|
42.2
|
1.0
|
FE3
|
B:SF4418
|
2.5
|
39.6
|
1.0
|
FE1
|
B:SF4418
|
2.5
|
36.4
|
1.0
|
FE4
|
B:SF4418
|
2.5
|
38.8
|
1.0
|
CB
|
B:CYS132
|
3.4
|
42.4
|
1.0
|
S2
|
B:SF4418
|
3.7
|
40.1
|
1.0
|
CA
|
B:CYS132
|
4.1
|
41.1
|
1.0
|
OXT
|
B:SAM417
|
4.2
|
36.1
|
1.0
|
N
|
B:SAM417
|
4.3
|
36.5
|
1.0
|
SG
|
B:CYS125
|
4.5
|
47.3
|
1.0
|
SG
|
B:CYS129
|
4.5
|
43.8
|
1.0
|
CB
|
B:ALA138
|
4.5
|
49.8
|
1.0
|
SD
|
B:SAM417
|
4.6
|
40.2
|
0.8
|
CB
|
B:CYS129
|
4.7
|
41.2
|
1.0
|
CE
|
B:SAM417
|
5.0
|
44.0
|
1.0
|
|
Iron binding site 7 out
of 16 in 2a5h
Go back to
Iron Binding Sites List in 2a5h
Iron binding site 7 out
of 16 in the 2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate).
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of 2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate). within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe418
b:39.6
occ:1.00
|
FE3
|
B:SF4418
|
0.0
|
39.6
|
1.0
|
S1
|
B:SF4418
|
2.1
|
40.6
|
1.0
|
S4
|
B:SF4418
|
2.2
|
38.7
|
1.0
|
S2
|
B:SF4418
|
2.3
|
40.1
|
1.0
|
SG
|
B:CYS125
|
2.3
|
47.3
|
1.0
|
FE2
|
B:SF4418
|
2.5
|
35.8
|
1.0
|
FE1
|
B:SF4418
|
2.6
|
36.4
|
1.0
|
FE4
|
B:SF4418
|
2.6
|
38.8
|
1.0
|
CB
|
B:CYS125
|
3.3
|
50.4
|
1.0
|
N
|
B:SAM417
|
3.4
|
36.5
|
1.0
|
S3
|
B:SF4418
|
3.7
|
36.2
|
1.0
|
CA
|
B:GLY171
|
4.3
|
49.5
|
1.0
|
OXT
|
B:SAM417
|
4.3
|
36.1
|
1.0
|
C
|
B:GLY171
|
4.4
|
47.6
|
1.0
|
O
|
B:MSE127
|
4.5
|
48.8
|
1.0
|
SG
|
B:CYS132
|
4.5
|
42.2
|
1.0
|
SG
|
B:CYS129
|
4.6
|
43.8
|
1.0
|
O
|
B:GLY171
|
4.7
|
46.0
|
1.0
|
CB
|
B:ALA138
|
4.7
|
49.8
|
1.0
|
CA
|
B:CYS125
|
4.7
|
51.5
|
1.0
|
CD2
|
B:TYR128
|
4.8
|
53.9
|
1.0
|
CA
|
B:SAM417
|
4.8
|
39.7
|
1.0
|
N
|
B:ASP172
|
4.9
|
47.7
|
1.0
|
|
Iron binding site 8 out
of 16 in 2a5h
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Iron Binding Sites List in 2a5h
Iron binding site 8 out
of 16 in the 2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate).
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of 2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate). within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe418
b:38.8
occ:1.00
|
FE4
|
B:SF4418
|
0.0
|
38.8
|
1.0
|
S1
|
B:SF4418
|
2.1
|
40.6
|
1.0
|
S3
|
B:SF4418
|
2.2
|
36.2
|
1.0
|
S2
|
B:SF4418
|
2.2
|
40.1
|
1.0
|
SG
|
B:CYS129
|
2.3
|
43.8
|
1.0
|
FE2
|
B:SF4418
|
2.5
|
35.8
|
1.0
|
FE3
|
B:SF4418
|
2.6
|
39.6
|
1.0
|
FE1
|
B:SF4418
|
2.6
|
36.4
|
1.0
|
CB
|
B:CYS129
|
3.3
|
41.2
|
1.0
|
OXT
|
B:SAM417
|
3.5
|
36.1
|
1.0
|
S4
|
B:SF4418
|
3.7
|
38.7
|
1.0
|
N
|
B:CYS129
|
3.9
|
45.9
|
1.0
|
CD
|
B:ARG202
|
4.1
|
39.5
|
1.0
|
N
|
B:SAM417
|
4.1
|
36.5
|
1.0
|
CA
|
B:CYS129
|
4.2
|
44.1
|
1.0
|
O
|
B:MSE127
|
4.2
|
48.8
|
1.0
|
CE1
|
B:HIS230
|
4.4
|
35.3
|
1.0
|
ND1
|
B:HIS230
|
4.4
|
38.8
|
1.0
|
SG
|
B:CYS132
|
4.5
|
42.2
|
1.0
|
SG
|
B:CYS125
|
4.7
|
47.3
|
1.0
|
CB
|
B:CYS132
|
4.8
|
42.4
|
1.0
|
C
|
B:SAM417
|
4.9
|
36.8
|
1.0
|
CB
|
B:ARG202
|
4.9
|
40.3
|
1.0
|
|
Iron binding site 9 out
of 16 in 2a5h
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Iron Binding Sites List in 2a5h
Iron binding site 9 out
of 16 in the 2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate).
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of 2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate). within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe418
b:22.5
occ:1.00
|
FE1
|
C:SF4418
|
0.0
|
22.5
|
1.0
|
OXT
|
C:SAM417
|
2.0
|
23.0
|
1.0
|
N
|
C:SAM417
|
2.0
|
21.8
|
1.0
|
S4
|
C:SF4418
|
2.1
|
24.3
|
1.0
|
S3
|
C:SF4418
|
2.2
|
22.4
|
1.0
|
S2
|
C:SF4418
|
2.4
|
25.1
|
1.0
|
FE3
|
C:SF4418
|
2.6
|
25.5
|
1.0
|
FE2
|
C:SF4418
|
2.6
|
22.0
|
1.0
|
FE4
|
C:SF4418
|
2.6
|
24.6
|
1.0
|
C
|
C:SAM417
|
3.0
|
23.6
|
1.0
|
CA
|
C:SAM417
|
3.0
|
25.9
|
1.0
|
SD
|
C:SAM417
|
3.2
|
27.3
|
0.8
|
CG
|
C:SAM417
|
3.6
|
25.8
|
1.0
|
S1
|
C:SF4418
|
3.7
|
26.4
|
1.0
|
CB
|
C:SAM417
|
3.9
|
25.1
|
1.0
|
O
|
C:SAM417
|
4.1
|
22.9
|
1.0
|
ND1
|
C:HIS230
|
4.4
|
27.1
|
1.0
|
O
|
C:GLY171
|
4.4
|
29.9
|
1.0
|
CE
|
C:SAM417
|
4.6
|
31.8
|
1.0
|
SG
|
C:CYS125
|
4.6
|
31.2
|
1.0
|
SG
|
C:CYS129
|
4.7
|
28.1
|
1.0
|
SG
|
C:CYS132
|
4.8
|
27.9
|
1.0
|
C
|
C:GLY171
|
4.8
|
31.6
|
1.0
|
CE1
|
C:HIS230
|
4.9
|
23.7
|
1.0
|
C5'
|
C:SAM417
|
4.9
|
23.7
|
1.0
|
C3'
|
C:SAM417
|
5.0
|
23.4
|
1.0
|
|
Iron binding site 10 out
of 16 in 2a5h
Go back to
Iron Binding Sites List in 2a5h
Iron binding site 10 out
of 16 in the 2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate).
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of 2.1 Angstrom X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale SB4, with Michaelis Analog (L-Alpha-Lysine External Aldimine Form of Pyridoxal-5'-Phosphate). within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe418
b:22.0
occ:1.00
|
FE2
|
C:SF4418
|
0.0
|
22.0
|
1.0
|
S4
|
C:SF4418
|
2.1
|
24.3
|
1.0
|
S1
|
C:SF4418
|
2.2
|
26.4
|
1.0
|
S3
|
C:SF4418
|
2.2
|
22.4
|
1.0
|
SG
|
C:CYS132
|
2.3
|
27.9
|
1.0
|
FE4
|
C:SF4418
|
2.5
|
24.6
|
1.0
|
FE1
|
C:SF4418
|
2.6
|
22.5
|
1.0
|
FE3
|
C:SF4418
|
2.6
|
25.5
|
1.0
|
CB
|
C:CYS132
|
3.3
|
28.6
|
1.0
|
S2
|
C:SF4418
|
3.8
|
25.1
|
1.0
|
CA
|
C:CYS132
|
4.1
|
28.3
|
1.0
|
OXT
|
C:SAM417
|
4.3
|
23.0
|
1.0
|
N
|
C:SAM417
|
4.3
|
21.8
|
1.0
|
SD
|
C:SAM417
|
4.5
|
27.3
|
0.8
|
SG
|
C:CYS129
|
4.5
|
28.1
|
1.0
|
CB
|
C:ALA138
|
4.6
|
33.9
|
1.0
|
SG
|
C:CYS125
|
4.6
|
31.2
|
1.0
|
CB
|
C:CYS129
|
4.8
|
27.1
|
1.0
|
CE
|
C:SAM417
|
4.8
|
31.8
|
1.0
|
C
|
C:CYS132
|
4.9
|
27.9
|
1.0
|
CB
|
C:ARG134
|
4.9
|
29.6
|
1.0
|
|
Reference:
B.W.Lepore,
F.J.Ruzicka,
P.A.Frey,
D.Ringe.
The X-Ray Crystal Structure of Lysine-2,3-Aminomutase From Clostridium Subterminale. Proc.Natl.Acad.Sci.Usa V. 102 13819 2005.
ISSN: ISSN 0027-8424
PubMed: 16166264
DOI: 10.1073/PNAS.0505726102
Page generated: Sat Aug 3 18:51:45 2024
|