Iron in PDB 2bcc: Stigmatellin-Bound Cytochrome BC1 Complex From Chicken
Enzymatic activity of Stigmatellin-Bound Cytochrome BC1 Complex From Chicken
All present enzymatic activity of Stigmatellin-Bound Cytochrome BC1 Complex From Chicken:
1.10.2.2;
Protein crystallography data
The structure of Stigmatellin-Bound Cytochrome BC1 Complex From Chicken, PDB code: 2bcc
was solved by
Z.Zhang,
L.Huang,
V.M.Shulmeister,
Y.I.Chi,
K.K.Kim,
L.W.Hung,
A.R.Crofts,
E.A.Berry,
S.H.Kim,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
12.00 /
3.50
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
173.460,
182.450,
241.330,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
28.4 /
31.7
|
Iron Binding Sites:
The binding sites of Iron atom in the Stigmatellin-Bound Cytochrome BC1 Complex From Chicken
(pdb code 2bcc). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 5 binding sites of Iron where determined in the
Stigmatellin-Bound Cytochrome BC1 Complex From Chicken, PDB code: 2bcc:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
Iron binding site 1 out
of 5 in 2bcc
Go back to
Iron Binding Sites List in 2bcc
Iron binding site 1 out
of 5 in the Stigmatellin-Bound Cytochrome BC1 Complex From Chicken
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Stigmatellin-Bound Cytochrome BC1 Complex From Chicken within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe381
b:21.1
occ:1.00
|
FE
|
C:HEM381
|
0.0
|
21.1
|
1.0
|
NA
|
C:HEM381
|
1.9
|
18.1
|
1.0
|
NC
|
C:HEM381
|
1.9
|
24.8
|
1.0
|
ND
|
C:HEM381
|
1.9
|
20.8
|
1.0
|
NB
|
C:HEM381
|
1.9
|
23.7
|
1.0
|
NE2
|
C:HIS84
|
2.0
|
17.4
|
1.0
|
NE2
|
C:HIS183
|
2.0
|
20.3
|
1.0
|
CE1
|
C:HIS84
|
2.9
|
14.7
|
1.0
|
C1A
|
C:HEM381
|
2.9
|
19.0
|
1.0
|
C4A
|
C:HEM381
|
2.9
|
20.2
|
1.0
|
C1C
|
C:HEM381
|
2.9
|
32.0
|
1.0
|
CE1
|
C:HIS183
|
2.9
|
20.2
|
1.0
|
C4D
|
C:HEM381
|
3.0
|
23.0
|
1.0
|
C4C
|
C:HEM381
|
3.0
|
22.4
|
1.0
|
C1D
|
C:HEM381
|
3.0
|
23.1
|
1.0
|
C4B
|
C:HEM381
|
3.0
|
26.9
|
1.0
|
C1B
|
C:HEM381
|
3.0
|
26.2
|
1.0
|
CD2
|
C:HIS84
|
3.1
|
19.1
|
1.0
|
CD2
|
C:HIS183
|
3.1
|
18.3
|
1.0
|
CHC
|
C:HEM381
|
3.3
|
31.7
|
1.0
|
CHA
|
C:HEM381
|
3.3
|
20.0
|
1.0
|
CHD
|
C:HEM381
|
3.3
|
21.6
|
1.0
|
CHB
|
C:HEM381
|
3.3
|
21.6
|
1.0
|
ND1
|
C:HIS84
|
4.1
|
19.1
|
1.0
|
ND1
|
C:HIS183
|
4.1
|
18.1
|
1.0
|
C2A
|
C:HEM381
|
4.1
|
23.7
|
1.0
|
C3A
|
C:HEM381
|
4.1
|
22.7
|
1.0
|
C2C
|
C:HEM381
|
4.2
|
31.8
|
1.0
|
CG
|
C:HIS84
|
4.2
|
18.1
|
1.0
|
C3D
|
C:HEM381
|
4.2
|
24.4
|
1.0
|
C3C
|
C:HEM381
|
4.2
|
26.5
|
1.0
|
C2D
|
C:HEM381
|
4.2
|
25.3
|
1.0
|
CG
|
C:HIS183
|
4.2
|
16.8
|
1.0
|
C3B
|
C:HEM381
|
4.3
|
27.3
|
1.0
|
C2B
|
C:HEM381
|
4.3
|
29.1
|
1.0
|
CA
|
C:GLY49
|
4.7
|
22.4
|
1.0
|
|
Iron binding site 2 out
of 5 in 2bcc
Go back to
Iron Binding Sites List in 2bcc
Iron binding site 2 out
of 5 in the Stigmatellin-Bound Cytochrome BC1 Complex From Chicken
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Stigmatellin-Bound Cytochrome BC1 Complex From Chicken within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe382
b:8.6
occ:1.00
|
FE
|
C:HEM382
|
0.0
|
8.6
|
1.0
|
NA
|
C:HEM382
|
1.8
|
14.8
|
1.0
|
NC
|
C:HEM382
|
1.9
|
13.1
|
1.0
|
NB
|
C:HEM382
|
2.0
|
20.8
|
1.0
|
ND
|
C:HEM382
|
2.0
|
17.6
|
1.0
|
NE2
|
C:HIS197
|
2.1
|
14.8
|
1.0
|
NE2
|
C:HIS98
|
2.2
|
19.5
|
1.0
|
C4A
|
C:HEM382
|
2.8
|
20.2
|
1.0
|
C1A
|
C:HEM382
|
2.9
|
17.4
|
1.0
|
C1C
|
C:HEM382
|
3.0
|
19.1
|
1.0
|
C1B
|
C:HEM382
|
3.0
|
23.4
|
1.0
|
C4C
|
C:HEM382
|
3.0
|
11.6
|
1.0
|
CD2
|
C:HIS197
|
3.0
|
19.5
|
1.0
|
C4B
|
C:HEM382
|
3.0
|
26.4
|
1.0
|
C4D
|
C:HEM382
|
3.1
|
18.2
|
1.0
|
C1D
|
C:HEM382
|
3.1
|
20.1
|
1.0
|
CE1
|
C:HIS197
|
3.1
|
14.6
|
1.0
|
CD2
|
C:HIS98
|
3.1
|
22.2
|
1.0
|
CHB
|
C:HEM382
|
3.2
|
24.1
|
1.0
|
CE1
|
C:HIS98
|
3.3
|
24.4
|
1.0
|
CHC
|
C:HEM382
|
3.4
|
23.4
|
1.0
|
CHA
|
C:HEM382
|
3.4
|
17.5
|
1.0
|
CHD
|
C:HEM382
|
3.4
|
19.7
|
1.0
|
C3A
|
C:HEM382
|
4.1
|
24.2
|
1.0
|
C2A
|
C:HEM382
|
4.1
|
22.5
|
1.0
|
CG
|
C:HIS197
|
4.2
|
19.4
|
1.0
|
ND1
|
C:HIS197
|
4.2
|
20.6
|
1.0
|
C2C
|
C:HEM382
|
4.2
|
17.8
|
1.0
|
C3C
|
C:HEM382
|
4.2
|
13.8
|
1.0
|
C2B
|
C:HEM382
|
4.3
|
26.1
|
1.0
|
C3B
|
C:HEM382
|
4.3
|
27.5
|
1.0
|
C3D
|
C:HEM382
|
4.3
|
16.1
|
1.0
|
C2D
|
C:HEM382
|
4.3
|
20.3
|
1.0
|
CG
|
C:HIS98
|
4.3
|
25.8
|
1.0
|
ND1
|
C:HIS98
|
4.4
|
28.0
|
1.0
|
|
Iron binding site 3 out
of 5 in 2bcc
Go back to
Iron Binding Sites List in 2bcc
Iron binding site 3 out
of 5 in the Stigmatellin-Bound Cytochrome BC1 Complex From Chicken
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Stigmatellin-Bound Cytochrome BC1 Complex From Chicken within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe243
b:18.4
occ:1.00
|
FE
|
D:HEM243
|
0.0
|
18.4
|
1.0
|
NC
|
D:HEM243
|
1.9
|
22.1
|
1.0
|
NA
|
D:HEM243
|
1.9
|
19.8
|
1.0
|
ND
|
D:HEM243
|
2.0
|
21.6
|
1.0
|
NB
|
D:HEM243
|
2.0
|
16.7
|
1.0
|
NE2
|
D:HIS41
|
2.0
|
26.1
|
1.0
|
SD
|
D:MET160
|
2.2
|
12.4
|
1.0
|
C1A
|
D:HEM243
|
3.0
|
19.5
|
1.0
|
C4C
|
D:HEM243
|
3.0
|
22.9
|
1.0
|
CD2
|
D:HIS41
|
3.0
|
32.1
|
1.0
|
C1C
|
D:HEM243
|
3.0
|
26.5
|
1.0
|
C1B
|
D:HEM243
|
3.0
|
18.0
|
1.0
|
C4A
|
D:HEM243
|
3.0
|
20.8
|
1.0
|
C4D
|
D:HEM243
|
3.0
|
21.0
|
1.0
|
CE1
|
D:HIS41
|
3.0
|
29.1
|
1.0
|
C1D
|
D:HEM243
|
3.0
|
21.4
|
1.0
|
C4B
|
D:HEM243
|
3.1
|
20.4
|
1.0
|
CHA
|
D:HEM243
|
3.3
|
19.9
|
1.0
|
CHD
|
D:HEM243
|
3.3
|
20.4
|
1.0
|
CE
|
D:MET160
|
3.4
|
18.8
|
1.0
|
CHB
|
D:HEM243
|
3.4
|
21.9
|
1.0
|
CHC
|
D:HEM243
|
3.4
|
26.0
|
1.0
|
CG
|
D:MET160
|
3.5
|
23.0
|
1.0
|
ND1
|
D:HIS41
|
4.1
|
33.8
|
1.0
|
CG
|
D:HIS41
|
4.1
|
33.7
|
1.0
|
C2A
|
D:HEM243
|
4.2
|
19.1
|
1.0
|
CB
|
D:MET160
|
4.2
|
25.5
|
1.0
|
C3C
|
D:HEM243
|
4.2
|
27.8
|
1.0
|
C2C
|
D:HEM243
|
4.2
|
25.6
|
1.0
|
C2B
|
D:HEM243
|
4.3
|
18.4
|
1.0
|
C3D
|
D:HEM243
|
4.3
|
22.7
|
1.0
|
C3B
|
D:HEM243
|
4.3
|
19.8
|
1.0
|
C2D
|
D:HEM243
|
4.3
|
22.7
|
1.0
|
C3A
|
D:HEM243
|
4.3
|
18.9
|
1.0
|
|
Iron binding site 4 out
of 5 in 2bcc
Go back to
Iron Binding Sites List in 2bcc
Iron binding site 4 out
of 5 in the Stigmatellin-Bound Cytochrome BC1 Complex From Chicken
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Stigmatellin-Bound Cytochrome BC1 Complex From Chicken within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe197
b:60.0
occ:1.00
|
FE1
|
E:FES197
|
0.0
|
60.0
|
1.0
|
S2
|
E:FES197
|
2.2
|
65.8
|
1.0
|
S1
|
E:FES197
|
2.2
|
64.4
|
1.0
|
SG
|
E:CYS158
|
2.3
|
54.6
|
1.0
|
SG
|
E:CYS139
|
2.6
|
47.1
|
1.0
|
FE2
|
E:FES197
|
2.6
|
60.6
|
1.0
|
CB
|
E:CYS158
|
2.9
|
53.0
|
1.0
|
CB
|
E:CYS139
|
3.2
|
50.7
|
1.0
|
CB
|
E:HIS141
|
3.9
|
56.1
|
1.0
|
OG
|
E:SER163
|
4.2
|
61.3
|
1.0
|
ND1
|
E:HIS141
|
4.3
|
52.5
|
1.0
|
CA
|
E:CYS158
|
4.4
|
54.8
|
1.0
|
CB
|
E:SER163
|
4.4
|
63.5
|
1.0
|
CB
|
E:CYS160
|
4.5
|
53.8
|
1.0
|
CG
|
E:HIS141
|
4.6
|
57.1
|
1.0
|
CB
|
E:CYS144
|
4.6
|
53.0
|
1.0
|
O
|
E:CYS158
|
4.7
|
50.1
|
1.0
|
CA
|
E:CYS139
|
4.7
|
52.4
|
1.0
|
N
|
E:HIS161
|
4.7
|
60.9
|
1.0
|
ND1
|
E:HIS161
|
4.7
|
62.1
|
1.0
|
N
|
E:LEU142
|
4.7
|
57.3
|
1.0
|
C
|
E:CYS158
|
4.8
|
51.2
|
1.0
|
N
|
E:CYS144
|
4.8
|
57.0
|
1.0
|
N
|
E:HIS141
|
4.9
|
60.5
|
1.0
|
CA
|
E:HIS141
|
5.0
|
58.3
|
1.0
|
|
Iron binding site 5 out
of 5 in 2bcc
Go back to
Iron Binding Sites List in 2bcc
Iron binding site 5 out
of 5 in the Stigmatellin-Bound Cytochrome BC1 Complex From Chicken
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Stigmatellin-Bound Cytochrome BC1 Complex From Chicken within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe197
b:60.6
occ:1.00
|
FE2
|
E:FES197
|
0.0
|
60.6
|
1.0
|
ND1
|
E:HIS141
|
2.1
|
52.5
|
1.0
|
S1
|
E:FES197
|
2.2
|
64.4
|
1.0
|
S2
|
E:FES197
|
2.2
|
65.8
|
1.0
|
ND1
|
E:HIS161
|
2.4
|
62.1
|
1.0
|
FE1
|
E:FES197
|
2.6
|
60.0
|
1.0
|
CG
|
E:HIS141
|
3.0
|
57.1
|
1.0
|
CB
|
E:HIS161
|
3.1
|
62.4
|
1.0
|
CE1
|
E:HIS141
|
3.1
|
52.5
|
1.0
|
CG
|
E:HIS161
|
3.1
|
61.6
|
1.0
|
CB
|
E:HIS141
|
3.3
|
56.1
|
1.0
|
CE1
|
E:HIS161
|
3.6
|
65.0
|
1.0
|
N
|
E:HIS161
|
3.7
|
60.9
|
1.0
|
CA
|
E:HIS161
|
3.9
|
64.2
|
1.0
|
CD2
|
E:HIS141
|
4.1
|
58.6
|
1.0
|
NE2
|
E:HIS141
|
4.1
|
57.9
|
1.0
|
CB
|
E:CYS160
|
4.2
|
53.8
|
1.0
|
SG
|
E:CYS158
|
4.3
|
54.6
|
1.0
|
N
|
E:LEU142
|
4.3
|
57.3
|
1.0
|
CD2
|
E:HIS161
|
4.4
|
62.9
|
1.0
|
C
|
E:CYS160
|
4.4
|
58.6
|
1.0
|
SG
|
E:CYS139
|
4.5
|
47.1
|
1.0
|
C
|
E:HIS161
|
4.6
|
66.4
|
1.0
|
OG
|
E:SER163
|
4.6
|
61.3
|
1.0
|
NE2
|
E:HIS161
|
4.6
|
62.0
|
1.0
|
CA
|
E:HIS141
|
4.7
|
58.3
|
1.0
|
CB
|
E:LEU142
|
4.8
|
58.6
|
1.0
|
CA
|
E:CYS160
|
4.8
|
57.9
|
1.0
|
C
|
E:HIS141
|
4.9
|
57.3
|
1.0
|
CG
|
E:PRO175
|
5.0
|
59.4
|
1.0
|
|
Reference:
Z.Zhang,
L.Huang,
V.M.Shulmeister,
Y.I.Chi,
K.K.Kim,
L.W.Hung,
A.R.Crofts,
E.A.Berry,
S.H.Kim.
Electron Transfer By Domain Movement in Cytochrome BC1 Nature V. 392 677 1998.
ISSN: ISSN 0028-0836
PubMed: 9565029
DOI: 10.1038/33612
Page generated: Sat Aug 3 19:33:06 2024
|