Atomistry » Iron » PDB 2ays-2bmm » 2bcc
Atomistry »
  Iron »
    PDB 2ays-2bmm »
      2bcc »

Iron in PDB 2bcc: Stigmatellin-Bound Cytochrome BC1 Complex From Chicken

Enzymatic activity of Stigmatellin-Bound Cytochrome BC1 Complex From Chicken

All present enzymatic activity of Stigmatellin-Bound Cytochrome BC1 Complex From Chicken:
1.10.2.2;

Protein crystallography data

The structure of Stigmatellin-Bound Cytochrome BC1 Complex From Chicken, PDB code: 2bcc was solved by Z.Zhang, L.Huang, V.M.Shulmeister, Y.I.Chi, K.K.Kim, L.W.Hung, A.R.Crofts, E.A.Berry, S.H.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 12.00 / 3.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 173.460, 182.450, 241.330, 90.00, 90.00, 90.00
R / Rfree (%) 28.4 / 31.7

Iron Binding Sites:

The binding sites of Iron atom in the Stigmatellin-Bound Cytochrome BC1 Complex From Chicken (pdb code 2bcc). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 5 binding sites of Iron where determined in the Stigmatellin-Bound Cytochrome BC1 Complex From Chicken, PDB code: 2bcc:
Jump to Iron binding site number: 1; 2; 3; 4; 5;

Iron binding site 1 out of 5 in 2bcc

Go back to Iron Binding Sites List in 2bcc
Iron binding site 1 out of 5 in the Stigmatellin-Bound Cytochrome BC1 Complex From Chicken


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Stigmatellin-Bound Cytochrome BC1 Complex From Chicken within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe381

b:21.1
occ:1.00
FE C:HEM381 0.0 21.1 1.0
NA C:HEM381 1.9 18.1 1.0
NC C:HEM381 1.9 24.8 1.0
ND C:HEM381 1.9 20.8 1.0
NB C:HEM381 1.9 23.7 1.0
NE2 C:HIS84 2.0 17.4 1.0
NE2 C:HIS183 2.0 20.3 1.0
CE1 C:HIS84 2.9 14.7 1.0
C1A C:HEM381 2.9 19.0 1.0
C4A C:HEM381 2.9 20.2 1.0
C1C C:HEM381 2.9 32.0 1.0
CE1 C:HIS183 2.9 20.2 1.0
C4D C:HEM381 3.0 23.0 1.0
C4C C:HEM381 3.0 22.4 1.0
C1D C:HEM381 3.0 23.1 1.0
C4B C:HEM381 3.0 26.9 1.0
C1B C:HEM381 3.0 26.2 1.0
CD2 C:HIS84 3.1 19.1 1.0
CD2 C:HIS183 3.1 18.3 1.0
CHC C:HEM381 3.3 31.7 1.0
CHA C:HEM381 3.3 20.0 1.0
CHD C:HEM381 3.3 21.6 1.0
CHB C:HEM381 3.3 21.6 1.0
ND1 C:HIS84 4.1 19.1 1.0
ND1 C:HIS183 4.1 18.1 1.0
C2A C:HEM381 4.1 23.7 1.0
C3A C:HEM381 4.1 22.7 1.0
C2C C:HEM381 4.2 31.8 1.0
CG C:HIS84 4.2 18.1 1.0
C3D C:HEM381 4.2 24.4 1.0
C3C C:HEM381 4.2 26.5 1.0
C2D C:HEM381 4.2 25.3 1.0
CG C:HIS183 4.2 16.8 1.0
C3B C:HEM381 4.3 27.3 1.0
C2B C:HEM381 4.3 29.1 1.0
CA C:GLY49 4.7 22.4 1.0

Iron binding site 2 out of 5 in 2bcc

Go back to Iron Binding Sites List in 2bcc
Iron binding site 2 out of 5 in the Stigmatellin-Bound Cytochrome BC1 Complex From Chicken


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Stigmatellin-Bound Cytochrome BC1 Complex From Chicken within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe382

b:8.6
occ:1.00
FE C:HEM382 0.0 8.6 1.0
NA C:HEM382 1.8 14.8 1.0
NC C:HEM382 1.9 13.1 1.0
NB C:HEM382 2.0 20.8 1.0
ND C:HEM382 2.0 17.6 1.0
NE2 C:HIS197 2.1 14.8 1.0
NE2 C:HIS98 2.2 19.5 1.0
C4A C:HEM382 2.8 20.2 1.0
C1A C:HEM382 2.9 17.4 1.0
C1C C:HEM382 3.0 19.1 1.0
C1B C:HEM382 3.0 23.4 1.0
C4C C:HEM382 3.0 11.6 1.0
CD2 C:HIS197 3.0 19.5 1.0
C4B C:HEM382 3.0 26.4 1.0
C4D C:HEM382 3.1 18.2 1.0
C1D C:HEM382 3.1 20.1 1.0
CE1 C:HIS197 3.1 14.6 1.0
CD2 C:HIS98 3.1 22.2 1.0
CHB C:HEM382 3.2 24.1 1.0
CE1 C:HIS98 3.3 24.4 1.0
CHC C:HEM382 3.4 23.4 1.0
CHA C:HEM382 3.4 17.5 1.0
CHD C:HEM382 3.4 19.7 1.0
C3A C:HEM382 4.1 24.2 1.0
C2A C:HEM382 4.1 22.5 1.0
CG C:HIS197 4.2 19.4 1.0
ND1 C:HIS197 4.2 20.6 1.0
C2C C:HEM382 4.2 17.8 1.0
C3C C:HEM382 4.2 13.8 1.0
C2B C:HEM382 4.3 26.1 1.0
C3B C:HEM382 4.3 27.5 1.0
C3D C:HEM382 4.3 16.1 1.0
C2D C:HEM382 4.3 20.3 1.0
CG C:HIS98 4.3 25.8 1.0
ND1 C:HIS98 4.4 28.0 1.0

Iron binding site 3 out of 5 in 2bcc

Go back to Iron Binding Sites List in 2bcc
Iron binding site 3 out of 5 in the Stigmatellin-Bound Cytochrome BC1 Complex From Chicken


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Stigmatellin-Bound Cytochrome BC1 Complex From Chicken within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe243

b:18.4
occ:1.00
FE D:HEM243 0.0 18.4 1.0
NC D:HEM243 1.9 22.1 1.0
NA D:HEM243 1.9 19.8 1.0
ND D:HEM243 2.0 21.6 1.0
NB D:HEM243 2.0 16.7 1.0
NE2 D:HIS41 2.0 26.1 1.0
SD D:MET160 2.2 12.4 1.0
C1A D:HEM243 3.0 19.5 1.0
C4C D:HEM243 3.0 22.9 1.0
CD2 D:HIS41 3.0 32.1 1.0
C1C D:HEM243 3.0 26.5 1.0
C1B D:HEM243 3.0 18.0 1.0
C4A D:HEM243 3.0 20.8 1.0
C4D D:HEM243 3.0 21.0 1.0
CE1 D:HIS41 3.0 29.1 1.0
C1D D:HEM243 3.0 21.4 1.0
C4B D:HEM243 3.1 20.4 1.0
CHA D:HEM243 3.3 19.9 1.0
CHD D:HEM243 3.3 20.4 1.0
CE D:MET160 3.4 18.8 1.0
CHB D:HEM243 3.4 21.9 1.0
CHC D:HEM243 3.4 26.0 1.0
CG D:MET160 3.5 23.0 1.0
ND1 D:HIS41 4.1 33.8 1.0
CG D:HIS41 4.1 33.7 1.0
C2A D:HEM243 4.2 19.1 1.0
CB D:MET160 4.2 25.5 1.0
C3C D:HEM243 4.2 27.8 1.0
C2C D:HEM243 4.2 25.6 1.0
C2B D:HEM243 4.3 18.4 1.0
C3D D:HEM243 4.3 22.7 1.0
C3B D:HEM243 4.3 19.8 1.0
C2D D:HEM243 4.3 22.7 1.0
C3A D:HEM243 4.3 18.9 1.0

Iron binding site 4 out of 5 in 2bcc

Go back to Iron Binding Sites List in 2bcc
Iron binding site 4 out of 5 in the Stigmatellin-Bound Cytochrome BC1 Complex From Chicken


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Stigmatellin-Bound Cytochrome BC1 Complex From Chicken within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe197

b:60.0
occ:1.00
FE1 E:FES197 0.0 60.0 1.0
S2 E:FES197 2.2 65.8 1.0
S1 E:FES197 2.2 64.4 1.0
SG E:CYS158 2.3 54.6 1.0
SG E:CYS139 2.6 47.1 1.0
FE2 E:FES197 2.6 60.6 1.0
CB E:CYS158 2.9 53.0 1.0
CB E:CYS139 3.2 50.7 1.0
CB E:HIS141 3.9 56.1 1.0
OG E:SER163 4.2 61.3 1.0
ND1 E:HIS141 4.3 52.5 1.0
CA E:CYS158 4.4 54.8 1.0
CB E:SER163 4.4 63.5 1.0
CB E:CYS160 4.5 53.8 1.0
CG E:HIS141 4.6 57.1 1.0
CB E:CYS144 4.6 53.0 1.0
O E:CYS158 4.7 50.1 1.0
CA E:CYS139 4.7 52.4 1.0
N E:HIS161 4.7 60.9 1.0
ND1 E:HIS161 4.7 62.1 1.0
N E:LEU142 4.7 57.3 1.0
C E:CYS158 4.8 51.2 1.0
N E:CYS144 4.8 57.0 1.0
N E:HIS141 4.9 60.5 1.0
CA E:HIS141 5.0 58.3 1.0

Iron binding site 5 out of 5 in 2bcc

Go back to Iron Binding Sites List in 2bcc
Iron binding site 5 out of 5 in the Stigmatellin-Bound Cytochrome BC1 Complex From Chicken


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Stigmatellin-Bound Cytochrome BC1 Complex From Chicken within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe197

b:60.6
occ:1.00
FE2 E:FES197 0.0 60.6 1.0
ND1 E:HIS141 2.1 52.5 1.0
S1 E:FES197 2.2 64.4 1.0
S2 E:FES197 2.2 65.8 1.0
ND1 E:HIS161 2.4 62.1 1.0
FE1 E:FES197 2.6 60.0 1.0
CG E:HIS141 3.0 57.1 1.0
CB E:HIS161 3.1 62.4 1.0
CE1 E:HIS141 3.1 52.5 1.0
CG E:HIS161 3.1 61.6 1.0
CB E:HIS141 3.3 56.1 1.0
CE1 E:HIS161 3.6 65.0 1.0
N E:HIS161 3.7 60.9 1.0
CA E:HIS161 3.9 64.2 1.0
CD2 E:HIS141 4.1 58.6 1.0
NE2 E:HIS141 4.1 57.9 1.0
CB E:CYS160 4.2 53.8 1.0
SG E:CYS158 4.3 54.6 1.0
N E:LEU142 4.3 57.3 1.0
CD2 E:HIS161 4.4 62.9 1.0
C E:CYS160 4.4 58.6 1.0
SG E:CYS139 4.5 47.1 1.0
C E:HIS161 4.6 66.4 1.0
OG E:SER163 4.6 61.3 1.0
NE2 E:HIS161 4.6 62.0 1.0
CA E:HIS141 4.7 58.3 1.0
CB E:LEU142 4.8 58.6 1.0
CA E:CYS160 4.8 57.9 1.0
C E:HIS141 4.9 57.3 1.0
CG E:PRO175 5.0 59.4 1.0

Reference:

Z.Zhang, L.Huang, V.M.Shulmeister, Y.I.Chi, K.K.Kim, L.W.Hung, A.R.Crofts, E.A.Berry, S.H.Kim. Electron Transfer By Domain Movement in Cytochrome BC1 Nature V. 392 677 1998.
ISSN: ISSN 0028-0836
PubMed: 9565029
DOI: 10.1038/33612
Page generated: Sat Aug 3 19:33:06 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy