Iron in PDB 2boy: Crystal Structure of 3-Chlorocatechol 1,2-Dioxygenase From Rhodococcus Opacus 1CP
Enzymatic activity of Crystal Structure of 3-Chlorocatechol 1,2-Dioxygenase From Rhodococcus Opacus 1CP
All present enzymatic activity of Crystal Structure of 3-Chlorocatechol 1,2-Dioxygenase From Rhodococcus Opacus 1CP:
1.13.11.1;
Protein crystallography data
The structure of Crystal Structure of 3-Chlorocatechol 1,2-Dioxygenase From Rhodococcus Opacus 1CP, PDB code: 2boy
was solved by
M.Ferraroni,
I.P.Solyanikova,
M.P.Kolomytseva,
A.Scozzafava,
L.A.Golovleva,
F.Briganti,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
84.51 /
1.90
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
83.179,
86.610,
93.447,
85.37,
66.53,
76.94
|
R / Rfree (%)
|
17.6 /
21.9
|
Other elements in 2boy:
The structure of Crystal Structure of 3-Chlorocatechol 1,2-Dioxygenase From Rhodococcus Opacus 1CP also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of 3-Chlorocatechol 1,2-Dioxygenase From Rhodococcus Opacus 1CP
(pdb code 2boy). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the
Crystal Structure of 3-Chlorocatechol 1,2-Dioxygenase From Rhodococcus Opacus 1CP, PDB code: 2boy:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Iron binding site 1 out
of 8 in 2boy
Go back to
Iron Binding Sites List in 2boy
Iron binding site 1 out
of 8 in the Crystal Structure of 3-Chlorocatechol 1,2-Dioxygenase From Rhodococcus Opacus 1CP
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of 3-Chlorocatechol 1,2-Dioxygenase From Rhodococcus Opacus 1CP within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1255
b:19.8
occ:1.00
|
N
|
A:BHO1256
|
1.7
|
32.1
|
1.0
|
OH
|
A:TYR133
|
1.9
|
17.9
|
1.0
|
NE2
|
A:HIS191
|
2.0
|
14.1
|
1.0
|
OH
|
A:TYR167
|
2.1
|
18.7
|
0.5
|
NE2
|
A:HIS193
|
2.2
|
15.3
|
1.0
|
C
|
A:BHO1256
|
2.5
|
29.9
|
1.0
|
O2
|
A:BHO1256
|
2.6
|
37.5
|
1.0
|
O1
|
A:BHO1256
|
2.7
|
37.1
|
1.0
|
CE1
|
A:HIS191
|
3.0
|
15.7
|
1.0
|
CZ
|
A:TYR133
|
3.0
|
17.7
|
1.0
|
CD2
|
A:HIS191
|
3.1
|
15.3
|
1.0
|
CD2
|
A:HIS193
|
3.1
|
12.8
|
1.0
|
CZ
|
A:TYR167
|
3.1
|
18.1
|
0.5
|
CE1
|
A:HIS193
|
3.2
|
17.7
|
1.0
|
CE2
|
A:TYR167
|
3.5
|
18.9
|
0.5
|
CE1
|
A:TYR133
|
3.6
|
19.7
|
1.0
|
C1
|
A:BHO1256
|
3.9
|
27.1
|
1.0
|
CE2
|
A:TYR133
|
4.0
|
19.3
|
1.0
|
NH1
|
A:ARG188
|
4.0
|
18.2
|
1.0
|
O
|
A:HOH2211
|
4.0
|
18.6
|
1.0
|
ND1
|
A:HIS191
|
4.1
|
17.6
|
1.0
|
CG
|
A:HIS191
|
4.2
|
16.9
|
1.0
|
CG
|
A:HIS193
|
4.3
|
16.5
|
1.0
|
ND1
|
A:HIS193
|
4.3
|
16.7
|
1.0
|
CE1
|
A:TYR167
|
4.3
|
19.4
|
0.5
|
O
|
A:HOH2266
|
4.3
|
15.5
|
1.0
|
C6
|
A:BHO1256
|
4.4
|
29.0
|
1.0
|
CD2
|
A:TYR167
|
4.9
|
18.3
|
0.5
|
CD1
|
A:TYR133
|
5.0
|
18.3
|
1.0
|
|
Iron binding site 2 out
of 8 in 2boy
Go back to
Iron Binding Sites List in 2boy
Iron binding site 2 out
of 8 in the Crystal Structure of 3-Chlorocatechol 1,2-Dioxygenase From Rhodococcus Opacus 1CP
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of 3-Chlorocatechol 1,2-Dioxygenase From Rhodococcus Opacus 1CP within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1255
b:21.6
occ:1.00
|
O1
|
B:BHO1256
|
1.8
|
30.2
|
0.5
|
OH
|
B:TYR133
|
2.0
|
22.5
|
1.0
|
NE2
|
B:HIS191
|
2.0
|
19.1
|
1.0
|
N
|
B:BHO1256
|
2.1
|
24.1
|
0.5
|
NE2
|
B:HIS193
|
2.1
|
16.6
|
1.0
|
OH
|
B:TYR167
|
2.2
|
21.2
|
0.5
|
O1
|
B:BHO1256
|
2.4
|
18.1
|
0.5
|
C
|
B:BHO1256
|
2.5
|
19.8
|
0.5
|
O2
|
B:BHO1256
|
2.8
|
25.1
|
0.5
|
C
|
B:BHO1256
|
2.9
|
28.1
|
0.5
|
CZ
|
B:TYR133
|
3.0
|
21.7
|
1.0
|
CE1
|
B:HIS191
|
3.0
|
19.8
|
1.0
|
CD2
|
B:HIS191
|
3.0
|
18.3
|
1.0
|
CE1
|
B:HIS193
|
3.1
|
17.4
|
1.0
|
CD2
|
B:HIS193
|
3.1
|
15.6
|
1.0
|
CZ
|
B:TYR167
|
3.2
|
24.7
|
0.5
|
N
|
B:BHO1256
|
3.5
|
30.3
|
0.5
|
CE2
|
B:TYR167
|
3.6
|
24.6
|
0.5
|
CE1
|
B:TYR133
|
3.7
|
23.4
|
1.0
|
O
|
B:HOH2142
|
4.0
|
19.2
|
1.0
|
NH2
|
B:ARG188
|
4.0
|
19.4
|
1.0
|
CE2
|
B:TYR133
|
4.0
|
23.2
|
1.0
|
C1
|
B:BHO1256
|
4.0
|
20.3
|
0.5
|
C1
|
B:BHO1256
|
4.1
|
28.1
|
0.5
|
ND1
|
B:HIS191
|
4.1
|
19.7
|
1.0
|
CG
|
B:HIS191
|
4.2
|
18.1
|
1.0
|
ND1
|
B:HIS193
|
4.2
|
17.9
|
1.0
|
CG
|
B:HIS193
|
4.2
|
16.2
|
1.0
|
O
|
B:HOH2240
|
4.3
|
20.3
|
1.0
|
C2
|
B:BHO1256
|
4.4
|
27.5
|
0.5
|
CE1
|
B:TYR167
|
4.4
|
25.3
|
0.5
|
O2
|
B:BHO1256
|
4.7
|
30.3
|
0.5
|
C6
|
B:BHO1256
|
4.7
|
20.9
|
0.5
|
CD2
|
B:TYR167
|
4.9
|
24.1
|
0.5
|
OE1
|
B:GLN207
|
4.9
|
20.1
|
1.0
|
CD1
|
B:TYR133
|
5.0
|
24.0
|
1.0
|
|
Iron binding site 3 out
of 8 in 2boy
Go back to
Iron Binding Sites List in 2boy
Iron binding site 3 out
of 8 in the Crystal Structure of 3-Chlorocatechol 1,2-Dioxygenase From Rhodococcus Opacus 1CP
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of 3-Chlorocatechol 1,2-Dioxygenase From Rhodococcus Opacus 1CP within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe1255
b:21.5
occ:1.00
|
O1
|
C:BHO1256
|
1.6
|
26.9
|
0.5
|
OH
|
C:TYR167
|
1.8
|
33.4
|
0.4
|
N
|
C:BHO1256
|
1.9
|
25.3
|
0.5
|
OH
|
C:TYR133
|
1.9
|
21.8
|
1.0
|
NE2
|
C:HIS191
|
2.1
|
21.0
|
1.0
|
NE2
|
C:HIS193
|
2.2
|
16.5
|
1.0
|
O2
|
C:BHO1256
|
2.2
|
17.6
|
0.5
|
C
|
C:BHO1256
|
2.3
|
25.1
|
0.5
|
N
|
C:BHO1256
|
2.4
|
26.7
|
0.5
|
C
|
C:BHO1256
|
2.7
|
21.9
|
0.5
|
O1
|
C:BHO1256
|
2.7
|
21.0
|
0.5
|
O2
|
C:BHO1256
|
2.7
|
22.7
|
0.5
|
CZ
|
C:TYR167
|
2.8
|
31.1
|
0.4
|
CZ
|
C:TYR133
|
3.0
|
21.9
|
1.0
|
CE1
|
C:HIS191
|
3.0
|
22.0
|
1.0
|
CD2
|
C:HIS193
|
3.1
|
13.8
|
1.0
|
CD2
|
C:HIS191
|
3.1
|
19.5
|
1.0
|
CE1
|
C:TYR167
|
3.1
|
31.5
|
0.4
|
CE1
|
C:HIS193
|
3.2
|
20.6
|
1.0
|
CE1
|
C:TYR133
|
3.7
|
21.9
|
1.0
|
C1
|
C:BHO1256
|
3.7
|
27.4
|
0.5
|
CE2
|
C:TYR133
|
3.9
|
21.9
|
1.0
|
CE2
|
C:TYR167
|
3.9
|
32.4
|
0.4
|
O
|
C:HOH2119
|
4.0
|
20.9
|
1.0
|
NH1
|
C:ARG188
|
4.1
|
17.2
|
0.7
|
C1
|
C:BHO1256
|
4.1
|
24.0
|
0.5
|
ND1
|
C:HIS191
|
4.2
|
21.3
|
1.0
|
CG
|
C:HIS191
|
4.2
|
20.2
|
1.0
|
O
|
C:HOH2203
|
4.3
|
16.2
|
1.0
|
CG
|
C:HIS193
|
4.3
|
17.4
|
1.0
|
ND1
|
C:HIS193
|
4.3
|
15.7
|
1.0
|
C6
|
C:BHO1256
|
4.4
|
27.9
|
0.5
|
CD1
|
C:TYR167
|
4.4
|
29.9
|
0.4
|
NH2
|
C:ARG188
|
4.7
|
24.4
|
0.3
|
C2
|
C:BHO1256
|
4.8
|
26.9
|
0.5
|
C6
|
C:BHO1256
|
4.8
|
23.7
|
0.5
|
OE1
|
C:GLN207
|
4.9
|
23.4
|
1.0
|
CD1
|
C:TYR133
|
5.0
|
19.7
|
1.0
|
|
Iron binding site 4 out
of 8 in 2boy
Go back to
Iron Binding Sites List in 2boy
Iron binding site 4 out
of 8 in the Crystal Structure of 3-Chlorocatechol 1,2-Dioxygenase From Rhodococcus Opacus 1CP
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of 3-Chlorocatechol 1,2-Dioxygenase From Rhodococcus Opacus 1CP within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe1255
b:23.6
occ:1.00
|
N
|
D:BHO1256
|
1.6
|
32.5
|
0.5
|
OH
|
D:TYR133
|
1.9
|
24.7
|
1.0
|
O1
|
D:BHO1256
|
2.0
|
27.1
|
0.5
|
NE2
|
D:HIS191
|
2.1
|
20.7
|
1.0
|
NE2
|
D:HIS193
|
2.2
|
20.3
|
1.0
|
OH
|
D:TYR167
|
2.2
|
23.8
|
0.5
|
O2
|
D:BHO1256
|
2.2
|
39.1
|
0.5
|
O2
|
D:BHO1256
|
2.2
|
25.8
|
0.5
|
N
|
D:BHO1256
|
2.5
|
27.9
|
0.5
|
C
|
D:BHO1256
|
2.5
|
25.9
|
0.5
|
C
|
D:BHO1256
|
2.6
|
29.7
|
0.5
|
CE1
|
D:HIS191
|
3.0
|
20.4
|
1.0
|
CZ
|
D:TYR133
|
3.0
|
22.9
|
1.0
|
O1
|
D:BHO1256
|
3.0
|
32.4
|
0.5
|
CD2
|
D:HIS191
|
3.1
|
20.5
|
1.0
|
CE1
|
D:HIS193
|
3.1
|
18.6
|
1.0
|
CD2
|
D:HIS193
|
3.2
|
18.1
|
1.0
|
CZ
|
D:TYR167
|
3.2
|
24.7
|
0.5
|
CE1
|
D:TYR167
|
3.6
|
26.5
|
0.5
|
CE1
|
D:TYR133
|
3.6
|
25.8
|
1.0
|
NH2
|
D:ARG188
|
3.9
|
30.5
|
0.4
|
C1
|
D:BHO1256
|
4.0
|
27.5
|
1.0
|
CE2
|
D:TYR133
|
4.0
|
21.1
|
1.0
|
O
|
D:HOH2140
|
4.0
|
20.1
|
1.0
|
NH1
|
D:ARG188
|
4.0
|
16.0
|
0.6
|
ND1
|
D:HIS191
|
4.1
|
21.4
|
1.0
|
CG
|
D:HIS191
|
4.2
|
22.0
|
1.0
|
ND1
|
D:HIS193
|
4.3
|
18.2
|
1.0
|
CG
|
D:HIS193
|
4.3
|
19.8
|
1.0
|
O
|
D:HOH2241
|
4.4
|
18.2
|
1.0
|
CE2
|
D:TYR167
|
4.4
|
26.9
|
0.5
|
NE
|
D:ARG188
|
4.5
|
30.1
|
0.4
|
C6
|
D:BHO1256
|
4.5
|
26.9
|
1.0
|
CZ
|
D:ARG188
|
4.7
|
31.7
|
0.4
|
CD1
|
D:TYR133
|
4.9
|
22.9
|
1.0
|
CD1
|
D:TYR167
|
5.0
|
27.1
|
0.5
|
|
Iron binding site 5 out
of 8 in 2boy
Go back to
Iron Binding Sites List in 2boy
Iron binding site 5 out
of 8 in the Crystal Structure of 3-Chlorocatechol 1,2-Dioxygenase From Rhodococcus Opacus 1CP
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of 3-Chlorocatechol 1,2-Dioxygenase From Rhodococcus Opacus 1CP within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe1255
b:20.2
occ:1.00
|
O1
|
E:BHO1256
|
1.8
|
22.6
|
0.5
|
OH
|
E:TYR133
|
1.9
|
19.3
|
1.0
|
O1
|
E:BHO1256
|
2.0
|
21.4
|
0.5
|
NE2
|
E:HIS191
|
2.1
|
19.5
|
1.0
|
NE2
|
E:HIS193
|
2.2
|
19.6
|
1.0
|
O2
|
E:BHO1256
|
2.3
|
16.2
|
0.5
|
C
|
E:BHO1256
|
2.4
|
22.2
|
0.5
|
N
|
E:BHO1256
|
2.4
|
23.4
|
0.5
|
C
|
E:BHO1256
|
2.8
|
22.4
|
0.5
|
CE2
|
E:TYR167
|
2.8
|
21.8
|
0.2
|
CZ
|
E:TYR133
|
3.0
|
18.8
|
1.0
|
CE1
|
E:HIS191
|
3.1
|
21.0
|
1.0
|
CE1
|
E:HIS193
|
3.1
|
20.0
|
1.0
|
CD2
|
E:HIS191
|
3.2
|
16.5
|
1.0
|
OH
|
E:TYR167
|
3.2
|
21.7
|
0.2
|
CD2
|
E:HIS193
|
3.2
|
17.8
|
1.0
|
N
|
E:BHO1256
|
3.2
|
25.5
|
0.5
|
CZ
|
E:TYR167
|
3.4
|
21.3
|
0.2
|
CE1
|
E:TYR133
|
3.7
|
19.9
|
1.0
|
C1
|
E:BHO1256
|
3.7
|
21.5
|
0.5
|
CD2
|
E:TYR167
|
3.8
|
22.4
|
0.2
|
CE2
|
E:TYR133
|
3.9
|
17.8
|
1.0
|
O
|
E:HOH2142
|
3.9
|
19.7
|
1.0
|
C1
|
E:BHO1256
|
4.1
|
21.8
|
0.5
|
NH1
|
E:ARG188
|
4.1
|
23.1
|
1.0
|
ND1
|
E:HIS193
|
4.2
|
19.5
|
1.0
|
ND1
|
E:HIS191
|
4.2
|
19.8
|
1.0
|
C6
|
E:BHO1256
|
4.3
|
23.1
|
0.5
|
CG
|
E:HIS191
|
4.3
|
18.1
|
1.0
|
O
|
E:HOH2232
|
4.3
|
18.3
|
1.0
|
CG
|
E:HIS193
|
4.3
|
18.2
|
1.0
|
C6
|
E:BHO1256
|
4.5
|
23.6
|
0.5
|
O2
|
E:BHO1256
|
4.5
|
27.2
|
0.5
|
CE1
|
E:TYR167
|
4.7
|
22.5
|
0.2
|
C2
|
E:BHO1256
|
4.9
|
19.4
|
0.5
|
CD2
|
E:TYR78
|
5.0
|
22.1
|
1.0
|
|
Iron binding site 6 out
of 8 in 2boy
Go back to
Iron Binding Sites List in 2boy
Iron binding site 6 out
of 8 in the Crystal Structure of 3-Chlorocatechol 1,2-Dioxygenase From Rhodococcus Opacus 1CP
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of 3-Chlorocatechol 1,2-Dioxygenase From Rhodococcus Opacus 1CP within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe1255
b:19.1
occ:1.00
|
OH
|
F:TYR133
|
1.9
|
19.2
|
1.0
|
OH
|
F:TYR167
|
2.0
|
22.3
|
0.2
|
N
|
F:BHO1256
|
2.0
|
28.9
|
0.5
|
O1
|
F:BHO1256
|
2.0
|
26.6
|
0.5
|
NE2
|
F:HIS191
|
2.1
|
17.6
|
1.0
|
NE2
|
F:HIS193
|
2.1
|
14.6
|
1.0
|
O2
|
F:BHO1256
|
2.2
|
20.6
|
0.5
|
N
|
F:BHO1256
|
2.3
|
25.9
|
0.5
|
C
|
F:BHO1256
|
2.3
|
25.6
|
0.5
|
O
|
F:HOH2169
|
2.4
|
40.2
|
0.8
|
C
|
F:BHO1256
|
2.7
|
27.4
|
0.5
|
O1
|
F:BHO1256
|
2.7
|
24.8
|
0.5
|
O2
|
F:BHO1256
|
2.9
|
27.6
|
0.5
|
CZ
|
F:TYR167
|
2.9
|
22.0
|
0.2
|
CZ
|
F:TYR133
|
3.0
|
18.1
|
1.0
|
CE1
|
F:HIS191
|
3.0
|
19.6
|
1.0
|
CE1
|
F:HIS193
|
3.1
|
13.3
|
1.0
|
CD2
|
F:HIS193
|
3.1
|
15.2
|
1.0
|
CD2
|
F:HIS191
|
3.1
|
16.9
|
1.0
|
CE2
|
F:TYR167
|
3.2
|
22.8
|
0.2
|
CE1
|
F:TYR133
|
3.7
|
19.8
|
1.0
|
C1
|
F:BHO1256
|
3.7
|
26.3
|
0.5
|
CE2
|
F:TYR133
|
3.9
|
20.7
|
1.0
|
NH1
|
F:ARG188
|
4.0
|
19.4
|
1.0
|
O
|
F:HOH2149
|
4.0
|
14.7
|
1.0
|
CE1
|
F:TYR167
|
4.1
|
22.5
|
0.2
|
C1
|
F:BHO1256
|
4.1
|
27.4
|
0.5
|
ND1
|
F:HIS191
|
4.2
|
19.1
|
1.0
|
ND1
|
F:HIS193
|
4.2
|
16.1
|
1.0
|
CG
|
F:HIS191
|
4.3
|
18.1
|
1.0
|
CG
|
F:HIS193
|
4.3
|
17.3
|
1.0
|
C6
|
F:BHO1256
|
4.3
|
27.4
|
0.5
|
O
|
F:HOH2229
|
4.3
|
15.8
|
1.0
|
CD2
|
F:TYR167
|
4.5
|
23.1
|
0.2
|
C6
|
F:BHO1256
|
4.8
|
29.9
|
0.5
|
C2
|
F:BHO1256
|
4.8
|
26.7
|
0.5
|
CD2
|
F:TYR78
|
5.0
|
24.0
|
1.0
|
CD1
|
F:TYR133
|
5.0
|
18.8
|
1.0
|
|
Iron binding site 7 out
of 8 in 2boy
Go back to
Iron Binding Sites List in 2boy
Iron binding site 7 out
of 8 in the Crystal Structure of 3-Chlorocatechol 1,2-Dioxygenase From Rhodococcus Opacus 1CP
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of 3-Chlorocatechol 1,2-Dioxygenase From Rhodococcus Opacus 1CP within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe1255
b:23.1
occ:1.00
|
OH
|
G:TYR133
|
1.9
|
22.1
|
1.0
|
OH
|
G:TYR167
|
2.0
|
26.6
|
0.2
|
NE2
|
G:HIS191
|
2.0
|
18.4
|
1.0
|
NE2
|
G:HIS193
|
2.0
|
17.0
|
1.0
|
O2
|
G:BHO1256
|
2.3
|
41.2
|
1.0
|
O1
|
G:BHO1256
|
2.3
|
38.4
|
1.0
|
N
|
G:BHO1256
|
2.4
|
42.0
|
1.0
|
C
|
G:BHO1256
|
2.6
|
35.4
|
1.0
|
CE1
|
G:HIS191
|
3.0
|
22.6
|
1.0
|
CZ
|
G:TYR133
|
3.0
|
22.3
|
1.0
|
CZ
|
G:TYR167
|
3.0
|
26.2
|
0.2
|
CE1
|
G:HIS193
|
3.0
|
16.2
|
1.0
|
CD2
|
G:HIS193
|
3.0
|
18.5
|
1.0
|
CD2
|
G:HIS191
|
3.0
|
19.9
|
1.0
|
CE1
|
G:TYR167
|
3.2
|
27.5
|
0.2
|
CE1
|
G:TYR133
|
3.6
|
23.6
|
1.0
|
O
|
G:HOH2116
|
3.9
|
24.8
|
1.0
|
CE2
|
G:TYR133
|
3.9
|
20.8
|
1.0
|
C1
|
G:BHO1256
|
3.9
|
31.6
|
1.0
|
ND1
|
G:HIS191
|
4.1
|
21.6
|
1.0
|
ND1
|
G:HIS193
|
4.1
|
20.6
|
1.0
|
CG
|
G:HIS191
|
4.2
|
23.0
|
1.0
|
CG
|
G:HIS193
|
4.2
|
17.6
|
1.0
|
NH1
|
G:ARG188
|
4.2
|
23.9
|
1.0
|
CE2
|
G:TYR167
|
4.2
|
27.6
|
0.2
|
O
|
G:HOH2180
|
4.3
|
20.6
|
1.0
|
C6
|
G:BHO1256
|
4.4
|
31.4
|
1.0
|
CD1
|
G:TYR167
|
4.5
|
27.9
|
0.2
|
CD1
|
G:TYR133
|
4.9
|
23.6
|
1.0
|
CD2
|
G:TYR78
|
5.0
|
24.8
|
1.0
|
|
Iron binding site 8 out
of 8 in 2boy
Go back to
Iron Binding Sites List in 2boy
Iron binding site 8 out
of 8 in the Crystal Structure of 3-Chlorocatechol 1,2-Dioxygenase From Rhodococcus Opacus 1CP
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of 3-Chlorocatechol 1,2-Dioxygenase From Rhodococcus Opacus 1CP within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe1255
b:22.6
occ:1.00
|
N
|
H:BHO1256
|
1.9
|
30.3
|
0.5
|
OH
|
H:TYR133
|
2.0
|
19.4
|
1.0
|
NE2
|
H:HIS193
|
2.0
|
21.4
|
1.0
|
O1
|
H:BHO1256
|
2.1
|
28.2
|
0.5
|
NE2
|
H:HIS191
|
2.2
|
20.8
|
1.0
|
O2
|
H:BHO1256
|
2.3
|
31.2
|
0.5
|
O2
|
H:BHO1256
|
2.4
|
22.6
|
0.5
|
C
|
H:BHO1256
|
2.6
|
29.6
|
0.5
|
C
|
H:BHO1256
|
2.6
|
28.4
|
0.5
|
O1
|
H:BHO1256
|
2.7
|
29.7
|
0.5
|
N
|
H:BHO1256
|
2.7
|
28.4
|
0.5
|
CE1
|
H:HIS193
|
2.9
|
20.5
|
1.0
|
CZ
|
H:TYR133
|
3.0
|
18.1
|
1.0
|
CE1
|
H:TYR167
|
3.1
|
27.6
|
0.2
|
CD2
|
H:HIS193
|
3.1
|
19.9
|
1.0
|
CE1
|
H:HIS191
|
3.1
|
22.3
|
1.0
|
CD2
|
H:HIS191
|
3.2
|
20.4
|
1.0
|
OH
|
H:TYR167
|
3.5
|
27.4
|
0.2
|
CE1
|
H:TYR133
|
3.7
|
17.7
|
1.0
|
CZ
|
H:TYR167
|
3.7
|
27.6
|
0.2
|
CE2
|
H:TYR133
|
3.9
|
20.8
|
1.0
|
C1
|
H:BHO1256
|
4.0
|
27.9
|
0.5
|
O
|
H:HOH2135
|
4.0
|
20.1
|
1.0
|
CD1
|
H:TYR167
|
4.0
|
27.5
|
0.2
|
C1
|
H:BHO1256
|
4.0
|
28.8
|
0.5
|
ND1
|
H:HIS193
|
4.1
|
19.3
|
1.0
|
NH1
|
H:ARG188
|
4.1
|
26.0
|
1.0
|
CG
|
H:HIS193
|
4.2
|
20.0
|
1.0
|
O
|
H:HOH2205
|
4.3
|
19.2
|
1.0
|
ND1
|
H:HIS191
|
4.3
|
21.0
|
1.0
|
CG
|
H:HIS191
|
4.3
|
21.5
|
1.0
|
C6
|
H:BHO1256
|
4.5
|
29.3
|
0.5
|
C6
|
H:BHO1256
|
4.7
|
30.2
|
0.5
|
CD2
|
H:TYR78
|
4.9
|
24.9
|
1.0
|
CE2
|
H:TYR167
|
5.0
|
27.8
|
0.2
|
CD1
|
H:TYR133
|
5.0
|
20.7
|
1.0
|
|
Reference:
M.Ferraroni,
M.P.Kolomytseva,
I.P.Solyanikova,
A.Scozzafava,
L.A.Golovleva,
F.Briganti.
Crystal Structure of 3-Chlorocatechol 1,2-Dioxygenase Key Enzyme of A New Modified Ortho-Pathway From the Gram-Positive Rhodococcus Opacus 1CP Grown on 2-Chlorophenol. J. Mol. Biol. V. 360 788 2006.
ISSN: ISSN 0022-2836
PubMed: 16793061
DOI: 10.1016/J.JMB.2006.05.046
Page generated: Sat Aug 3 19:45:00 2024
|