Iron in PDB 2bvj: Ligand-Free Structure of Cytochrome P450 Pikc (CYP107L1)

The structure of Ligand-Free Structure of Cytochrome P450 Pikc (CYP107L1), PDB code: 2bvj was solved by D.H.Sherman, S.Li, L.V.Yermalitskaya, Y.Kim, J.A.Smith, M.R.Waterman, L.M.Podust, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.98 / 2.1
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	218.190, 64.171, 73.593, 90.00, 107.15, 90.00
R / Rfree (%)	20.2 / 24.3

The binding sites of Iron atom in the Ligand-Free Structure of Cytochrome P450 Pikc (CYP107L1) (pdb code 2bvj). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Ligand-Free Structure of Cytochrome P450 Pikc (CYP107L1), PDB code: 2bvj:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Ligand-Free Structure of Cytochrome P450 Pikc (CYP107L1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Ligand-Free Structure of Cytochrome P450 Pikc (CYP107L1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1408 b:18.2 occ:1.00 FE A:HEM1408 0.0 18.2 1.0 NA A:HEM1408 2.0 16.4 1.0 NC A:HEM1408 2.0 17.1 1.0 NB A:HEM1408 2.0 16.1 1.0 ND A:HEM1408 2.0 16.6 1.0 SG A:CYS354 2.6 18.6 1.0 O A:HOH2087 3.0 38.8 1.0 C4A A:HEM1408 3.0 17.9 1.0 C1B A:HEM1408 3.0 15.1 1.0 C1A A:HEM1408 3.0 17.2 1.0 C1D A:HEM1408 3.0 17.8 1.0 C4C A:HEM1408 3.0 18.3 1.0 C4D A:HEM1408 3.0 17.7 1.0 C1C A:HEM1408 3.1 18.1 1.0 C4B A:HEM1408 3.1 17.0 1.0 CHB A:HEM1408 3.4 16.6 1.0 CHD A:HEM1408 3.4 15.5 1.0 CHA A:HEM1408 3.4 18.3 1.0 CB A:CYS354 3.4 13.7 1.0 CHC A:HEM1408 3.4 16.6 1.0 CA A:CYS354 4.1 17.1 1.0 C3A A:HEM1408 4.3 17.9 1.0 C2A A:HEM1408 4.3 17.4 1.0 C3D A:HEM1408 4.3 18.2 1.0 C2B A:HEM1408 4.3 16.7 1.0 C2D A:HEM1408 4.3 18.3 1.0 C2C A:HEM1408 4.3 19.8 1.0 C3C A:HEM1408 4.3 20.1 1.0 C3B A:HEM1408 4.3 17.1 1.0 O A:ALA243 4.4 25.9 1.0 OG1 A:THR247 4.5 20.4 1.0 N A:GLY356 4.8 15.0 1.0 CB A:ALA243 4.8 20.7 1.0 C A:CYS354 4.9 16.2 1.0 O A:HOH2034 4.9 43.3 1.0 N A:ILE355 5.0 16.9 1.0

Iron binding site 2 out of 2 in the Ligand-Free Structure of Cytochrome P450 Pikc (CYP107L1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Ligand-Free Structure of Cytochrome P450 Pikc (CYP107L1) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1408 b:17.9 occ:1.00 FE B:HEM1408 0.0 17.9 1.0 NA B:HEM1408 2.0 17.6 1.0 NC B:HEM1408 2.0 19.7 1.0 NB B:HEM1408 2.0 17.5 1.0 ND B:HEM1408 2.0 14.6 1.0 SG B:CYS354 2.7 20.2 1.0 O B:HOH2101 2.9 30.6 1.0 C4A B:HEM1408 3.0 16.8 1.0 C1B B:HEM1408 3.0 15.6 1.0 C1A B:HEM1408 3.0 15.5 1.0 C4C B:HEM1408 3.1 18.1 1.0 C1D B:HEM1408 3.1 16.2 1.0 C1C B:HEM1408 3.1 15.9 1.0 C4D B:HEM1408 3.1 16.9 1.0 C4B B:HEM1408 3.1 16.0 1.0 CHB B:HEM1408 3.4 15.8 1.0 CB B:CYS354 3.4 18.4 1.0 CHD B:HEM1408 3.4 15.8 1.0 CHA B:HEM1408 3.4 16.9 1.0 CHC B:HEM1408 3.4 16.1 1.0 CA B:CYS354 4.1 19.8 1.0 O B:ALA243 4.2 20.8 1.0 C3A B:HEM1408 4.3 14.6 1.0 C2A B:HEM1408 4.3 16.2 1.0 C3C B:HEM1408 4.3 17.5 1.0 C2C B:HEM1408 4.3 16.5 1.0 C2B B:HEM1408 4.3 15.1 1.0 C2D B:HEM1408 4.3 16.4 1.0 C3B B:HEM1408 4.3 16.0 1.0 C3D B:HEM1408 4.3 15.2 1.0 O B:HOH2057 4.5 31.7 1.0 CB B:ALA243 4.7 19.7 1.0 N B:GLY356 4.9 18.3 1.0 C B:CYS354 4.9 20.7 1.0 C B:ALA243 4.9 20.4 1.0 N B:ILE355 5.0 20.5 1.0

D.H.Sherman, S.Li, L.V.Yermalitskaya, Y.Kim, J.A.Smith, M.R.Waterman, L.M.Podust. The Structural Basis For Substrate Anchoring, Active Site Selectivity, and Product Formation By P450 Pikc From Streptomyces Venezuelae. J.Biol.Chem. V. 281 26289 2006.
ISSN: ISSN 0021-9258
PubMed: 16825192
DOI: 10.1074/JBC.M605478200