Iron in PDB 2c1d: Crystal Structure of Soxxa From P. Pantotrophus
Protein crystallography data
The structure of Crystal Structure of Soxxa From P. Pantotrophus, PDB code: 2c1d
was solved by
T.Dambe,
A.Quentmeier,
D.Rother,
C.Friedrich,
A.J.Scheidig,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
119.52 /
1.92
|
|
Space group
|
P 1 21 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
42.860,
180.010,
117.930,
90.00,
92.83,
90.00
|
|
R / Rfree (%)
|
15.9 /
21.1
|
Other elements in 2c1d:
The structure of Crystal Structure of Soxxa From P. Pantotrophus also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Iron atom in the Crystal Structure of Soxxa From P. Pantotrophus
(pdb code 2c1d). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the
Crystal Structure of Soxxa From P. Pantotrophus, PDB code: 2c1d:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 12 in 2c1d
Go back to
Iron Binding Sites List in 2c1d
Iron binding site 1 out
of 12 in the Crystal Structure of Soxxa From P. Pantotrophus
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Soxxa From P. Pantotrophus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1291
b:26.6
occ:1.00
|
FE
|
A:HEC1291
|
0.0
|
26.6
|
1.0
|
|
NB
|
A:HEC1291
|
2.0
|
27.2
|
1.0
|
|
NA
|
A:HEC1291
|
2.0
|
25.3
|
1.0
|
|
NC
|
A:HEC1291
|
2.1
|
27.2
|
1.0
|
|
NE2
|
A:HIS110
|
2.1
|
27.7
|
1.0
|
|
ND
|
A:HEC1291
|
2.1
|
24.4
|
1.0
|
|
SG
|
A:CYS143
|
2.2
|
27.2
|
1.0
|
|
C4A
|
A:HEC1291
|
3.0
|
24.6
|
1.0
|
|
C1B
|
A:HEC1291
|
3.0
|
26.4
|
1.0
|
|
C4B
|
A:HEC1291
|
3.0
|
26.6
|
1.0
|
|
CE1
|
A:HIS110
|
3.0
|
26.2
|
1.0
|
|
C1C
|
A:HEC1291
|
3.0
|
28.5
|
1.0
|
|
C4C
|
A:HEC1291
|
3.1
|
27.2
|
1.0
|
|
C1A
|
A:HEC1291
|
3.1
|
25.9
|
1.0
|
|
C1D
|
A:HEC1291
|
3.1
|
26.2
|
1.0
|
|
C4D
|
A:HEC1291
|
3.2
|
27.2
|
1.0
|
|
CD2
|
A:HIS110
|
3.2
|
25.9
|
1.0
|
|
CHB
|
A:HEC1291
|
3.3
|
26.1
|
1.0
|
|
CB
|
A:CYS143
|
3.4
|
27.5
|
1.0
|
|
CHC
|
A:HEC1291
|
3.4
|
27.1
|
1.0
|
|
CHD
|
A:HEC1291
|
3.4
|
26.2
|
1.0
|
|
CHA
|
A:HEC1291
|
3.5
|
26.0
|
1.0
|
|
ND1
|
A:HIS110
|
4.2
|
25.6
|
1.0
|
|
C2B
|
A:HEC1291
|
4.2
|
26.2
|
1.0
|
|
C3B
|
A:HEC1291
|
4.2
|
25.3
|
1.0
|
|
C3A
|
A:HEC1291
|
4.2
|
25.9
|
1.0
|
|
C2C
|
A:HEC1291
|
4.3
|
27.9
|
1.0
|
|
CG
|
A:HIS110
|
4.3
|
26.9
|
1.0
|
|
C2A
|
A:HEC1291
|
4.3
|
25.0
|
1.0
|
|
C3C
|
A:HEC1291
|
4.3
|
29.7
|
1.0
|
|
C2D
|
A:HEC1291
|
4.4
|
25.3
|
1.0
|
|
C3D
|
A:HEC1291
|
4.4
|
25.4
|
1.0
|
|
O
|
A:HOH2176
|
4.5
|
24.7
|
1.0
|
|
CA
|
A:CYS143
|
4.7
|
27.9
|
1.0
|
|
NH1
|
A:ARG147
|
4.9
|
36.0
|
1.0
|
|
CD
|
A:ARG147
|
5.0
|
34.4
|
1.0
|
|
Iron binding site 2 out
of 12 in 2c1d
Go back to
Iron Binding Sites List in 2c1d
Iron binding site 2 out
of 12 in the Crystal Structure of Soxxa From P. Pantotrophus
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Soxxa From P. Pantotrophus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1292
b:24.6
occ:1.00
|
FE
|
A:HEC1292
|
0.0
|
24.6
|
1.0
|
|
NB
|
A:HEC1292
|
2.0
|
23.0
|
1.0
|
|
ND
|
A:HEC1292
|
2.0
|
25.2
|
1.0
|
|
NC
|
A:HEC1292
|
2.0
|
23.2
|
1.0
|
|
NE2
|
A:HIS210
|
2.0
|
22.2
|
1.0
|
|
NA
|
A:HEC1292
|
2.1
|
23.1
|
1.0
|
|
SD
|
A:CSS251
|
2.2
|
28.3
|
1.0
|
|
CE1
|
A:HIS210
|
3.0
|
24.3
|
1.0
|
|
C4B
|
A:HEC1292
|
3.0
|
24.6
|
1.0
|
|
C4D
|
A:HEC1292
|
3.0
|
25.1
|
1.0
|
|
C1D
|
A:HEC1292
|
3.0
|
26.6
|
1.0
|
|
C1B
|
A:HEC1292
|
3.0
|
22.7
|
1.0
|
|
C1C
|
A:HEC1292
|
3.0
|
25.4
|
1.0
|
|
C4C
|
A:HEC1292
|
3.1
|
26.1
|
1.0
|
|
CD2
|
A:HIS210
|
3.1
|
25.2
|
1.0
|
|
C1A
|
A:HEC1292
|
3.1
|
22.3
|
1.0
|
|
C4A
|
A:HEC1292
|
3.1
|
22.2
|
1.0
|
|
CHC
|
A:HEC1292
|
3.4
|
24.0
|
1.0
|
|
CHD
|
A:HEC1292
|
3.4
|
25.0
|
1.0
|
|
CHA
|
A:HEC1292
|
3.4
|
25.0
|
1.0
|
|
CHB
|
A:HEC1292
|
3.5
|
21.5
|
1.0
|
|
SG
|
A:CSS251
|
3.5
|
31.4
|
1.0
|
|
ND1
|
A:HIS210
|
4.1
|
23.9
|
1.0
|
|
CG
|
A:HIS210
|
4.2
|
24.2
|
1.0
|
|
C3B
|
A:HEC1292
|
4.2
|
24.7
|
1.0
|
|
C2B
|
A:HEC1292
|
4.2
|
23.8
|
1.0
|
|
C3D
|
A:HEC1292
|
4.3
|
25.2
|
1.0
|
|
C2D
|
A:HEC1292
|
4.3
|
26.2
|
1.0
|
|
C2C
|
A:HEC1292
|
4.3
|
23.4
|
1.0
|
|
C3C
|
A:HEC1292
|
4.3
|
22.4
|
1.0
|
|
C3A
|
A:HEC1292
|
4.3
|
22.0
|
1.0
|
|
C2A
|
A:HEC1292
|
4.3
|
24.3
|
1.0
|
|
CB
|
A:CSS251
|
4.3
|
27.1
|
1.0
|
|
O
|
A:HOH2331
|
4.4
|
40.8
|
1.0
|
|
Iron binding site 3 out
of 12 in 2c1d
Go back to
Iron Binding Sites List in 2c1d
Iron binding site 3 out
of 12 in the Crystal Structure of Soxxa From P. Pantotrophus
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Soxxa From P. Pantotrophus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1158
b:29.4
occ:1.00
|
FE
|
B:HEC1158
|
0.0
|
29.4
|
1.0
|
|
NB
|
B:HEC1158
|
2.0
|
26.7
|
1.0
|
|
NA
|
B:HEC1158
|
2.0
|
30.0
|
1.0
|
|
NC
|
B:HEC1158
|
2.1
|
26.4
|
1.0
|
|
ND
|
B:HEC1158
|
2.1
|
30.1
|
1.0
|
|
SD
|
B:MET111
|
2.2
|
27.7
|
1.0
|
|
NE2
|
B:HIS65
|
2.3
|
40.3
|
1.0
|
|
CE1
|
B:HIS65
|
2.9
|
44.8
|
1.0
|
|
C1B
|
B:HEC1158
|
3.0
|
30.4
|
1.0
|
|
C4B
|
B:HEC1158
|
3.0
|
27.2
|
1.0
|
|
C4A
|
B:HEC1158
|
3.0
|
30.9
|
1.0
|
|
C1A
|
B:HEC1158
|
3.0
|
31.4
|
1.0
|
|
C1C
|
B:HEC1158
|
3.1
|
27.1
|
1.0
|
|
C4D
|
B:HEC1158
|
3.1
|
32.1
|
1.0
|
|
C4C
|
B:HEC1158
|
3.1
|
27.2
|
1.0
|
|
C1D
|
B:HEC1158
|
3.1
|
29.2
|
1.0
|
|
CE
|
B:MET111
|
3.3
|
28.6
|
1.0
|
|
CD2
|
B:HIS65
|
3.3
|
43.0
|
1.0
|
|
CHB
|
B:HEC1158
|
3.4
|
31.7
|
1.0
|
|
CHC
|
B:HEC1158
|
3.4
|
27.2
|
1.0
|
|
CHA
|
B:HEC1158
|
3.4
|
32.4
|
1.0
|
|
CG
|
B:MET111
|
3.5
|
26.9
|
1.0
|
|
CHD
|
B:HEC1158
|
3.5
|
28.4
|
1.0
|
|
ND1
|
B:HIS65
|
4.1
|
46.0
|
1.0
|
|
CB
|
B:MET111
|
4.1
|
28.2
|
1.0
|
|
C2B
|
B:HEC1158
|
4.2
|
30.0
|
1.0
|
|
C3B
|
B:HEC1158
|
4.2
|
26.6
|
1.0
|
|
C2A
|
B:HEC1158
|
4.2
|
32.0
|
1.0
|
|
C3A
|
B:HEC1158
|
4.3
|
31.8
|
1.0
|
|
CG
|
B:HIS65
|
4.3
|
35.6
|
1.0
|
|
C2C
|
B:HEC1158
|
4.3
|
26.2
|
1.0
|
|
C3D
|
B:HEC1158
|
4.3
|
33.3
|
1.0
|
|
C3C
|
B:HEC1158
|
4.3
|
27.3
|
1.0
|
|
C2D
|
B:HEC1158
|
4.4
|
32.1
|
1.0
|
|
Iron binding site 4 out
of 12 in 2c1d
Go back to
Iron Binding Sites List in 2c1d
Iron binding site 4 out
of 12 in the Crystal Structure of Soxxa From P. Pantotrophus
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of Soxxa From P. Pantotrophus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe1291
b:26.0
occ:1.00
|
FE
|
C:HEC1291
|
0.0
|
26.0
|
1.0
|
|
NE2
|
C:HIS110
|
2.0
|
26.5
|
1.0
|
|
NC
|
C:HEC1291
|
2.0
|
25.2
|
1.0
|
|
NA
|
C:HEC1291
|
2.0
|
22.5
|
1.0
|
|
ND
|
C:HEC1291
|
2.0
|
24.4
|
1.0
|
|
NB
|
C:HEC1291
|
2.1
|
24.8
|
1.0
|
|
SG
|
C:CYS143
|
2.3
|
25.7
|
1.0
|
|
CE1
|
C:HIS110
|
2.8
|
30.3
|
1.0
|
|
C4C
|
C:HEC1291
|
3.0
|
27.2
|
1.0
|
|
C1C
|
C:HEC1291
|
3.0
|
28.7
|
1.0
|
|
C1A
|
C:HEC1291
|
3.0
|
22.5
|
1.0
|
|
C1D
|
C:HEC1291
|
3.0
|
26.4
|
1.0
|
|
C4D
|
C:HEC1291
|
3.0
|
20.9
|
1.0
|
|
CD2
|
C:HIS110
|
3.1
|
27.0
|
1.0
|
|
C4A
|
C:HEC1291
|
3.1
|
24.0
|
1.0
|
|
C4B
|
C:HEC1291
|
3.1
|
25.4
|
1.0
|
|
C1B
|
C:HEC1291
|
3.1
|
25.3
|
1.0
|
|
CHD
|
C:HEC1291
|
3.4
|
25.7
|
1.0
|
|
CHA
|
C:HEC1291
|
3.4
|
23.0
|
1.0
|
|
CHC
|
C:HEC1291
|
3.4
|
26.8
|
1.0
|
|
CHB
|
C:HEC1291
|
3.5
|
25.3
|
1.0
|
|
CB
|
C:CYS143
|
3.5
|
25.8
|
1.0
|
|
ND1
|
C:HIS110
|
4.0
|
28.0
|
1.0
|
|
CG
|
C:HIS110
|
4.1
|
25.6
|
1.0
|
|
C2C
|
C:HEC1291
|
4.2
|
26.2
|
1.0
|
|
C3C
|
C:HEC1291
|
4.2
|
28.2
|
1.0
|
|
C2A
|
C:HEC1291
|
4.2
|
23.1
|
1.0
|
|
C2D
|
C:HEC1291
|
4.3
|
23.2
|
1.0
|
|
C3A
|
C:HEC1291
|
4.3
|
22.8
|
1.0
|
|
C3D
|
C:HEC1291
|
4.3
|
19.8
|
1.0
|
|
C2B
|
C:HEC1291
|
4.3
|
25.7
|
1.0
|
|
C3B
|
C:HEC1291
|
4.3
|
24.9
|
1.0
|
|
O
|
C:HOH2193
|
4.6
|
27.2
|
1.0
|
|
CA
|
C:CYS143
|
4.8
|
26.6
|
1.0
|
|
NH1
|
C:ARG147
|
4.9
|
39.6
|
1.0
|
|
CE
|
C:MET116
|
5.0
|
29.7
|
1.0
|
|
CD
|
C:ARG147
|
5.0
|
37.0
|
1.0
|
|
Iron binding site 5 out
of 12 in 2c1d
Go back to
Iron Binding Sites List in 2c1d
Iron binding site 5 out
of 12 in the Crystal Structure of Soxxa From P. Pantotrophus
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of Soxxa From P. Pantotrophus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe1292
b:24.5
occ:1.00
|
FE
|
C:HEC1292
|
0.0
|
24.5
|
1.0
|
|
NA
|
C:HEC1292
|
2.0
|
21.5
|
1.0
|
|
NB
|
C:HEC1292
|
2.0
|
20.8
|
1.0
|
|
NE2
|
C:HIS210
|
2.1
|
21.7
|
1.0
|
|
ND
|
C:HEC1292
|
2.1
|
21.8
|
1.0
|
|
NC
|
C:HEC1292
|
2.1
|
23.2
|
1.0
|
|
SD
|
C:CSS251
|
2.2
|
26.3
|
1.0
|
|
C1A
|
C:HEC1292
|
3.0
|
18.9
|
1.0
|
|
C4A
|
C:HEC1292
|
3.0
|
20.1
|
1.0
|
|
C1B
|
C:HEC1292
|
3.0
|
21.7
|
1.0
|
|
C4B
|
C:HEC1292
|
3.0
|
23.3
|
1.0
|
|
C4D
|
C:HEC1292
|
3.0
|
22.6
|
1.0
|
|
CE1
|
C:HIS210
|
3.0
|
25.2
|
1.0
|
|
CD2
|
C:HIS210
|
3.1
|
21.9
|
1.0
|
|
C1C
|
C:HEC1292
|
3.1
|
24.0
|
1.0
|
|
C1D
|
C:HEC1292
|
3.1
|
22.9
|
1.0
|
|
C4C
|
C:HEC1292
|
3.1
|
23.6
|
1.0
|
|
CHA
|
C:HEC1292
|
3.3
|
20.5
|
1.0
|
|
CHB
|
C:HEC1292
|
3.4
|
20.2
|
1.0
|
|
CHC
|
C:HEC1292
|
3.4
|
24.5
|
1.0
|
|
CHD
|
C:HEC1292
|
3.5
|
22.5
|
1.0
|
|
SG
|
C:CSS251
|
3.5
|
30.0
|
1.0
|
|
ND1
|
C:HIS210
|
4.2
|
22.2
|
1.0
|
|
C3A
|
C:HEC1292
|
4.2
|
19.4
|
1.0
|
|
C2A
|
C:HEC1292
|
4.2
|
20.4
|
1.0
|
|
CG
|
C:HIS210
|
4.2
|
22.2
|
1.0
|
|
C2B
|
C:HEC1292
|
4.2
|
21.0
|
1.0
|
|
C3B
|
C:HEC1292
|
4.2
|
23.2
|
1.0
|
|
C3D
|
C:HEC1292
|
4.3
|
20.6
|
1.0
|
|
C2C
|
C:HEC1292
|
4.4
|
23.1
|
1.0
|
|
C2D
|
C:HEC1292
|
4.4
|
21.8
|
1.0
|
|
C3C
|
C:HEC1292
|
4.4
|
23.3
|
1.0
|
|
CB
|
C:CSS251
|
4.5
|
24.7
|
1.0
|
|
Iron binding site 6 out
of 12 in 2c1d
Go back to
Iron Binding Sites List in 2c1d
Iron binding site 6 out
of 12 in the Crystal Structure of Soxxa From P. Pantotrophus
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of Soxxa From P. Pantotrophus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe1158
b:27.8
occ:1.00
|
FE
|
D:HEC1158
|
0.0
|
27.8
|
1.0
|
|
ND
|
D:HEC1158
|
2.0
|
26.4
|
1.0
|
|
NC
|
D:HEC1158
|
2.0
|
26.1
|
1.0
|
|
NB
|
D:HEC1158
|
2.1
|
26.2
|
1.0
|
|
NA
|
D:HEC1158
|
2.1
|
27.4
|
1.0
|
|
NE2
|
D:HIS65
|
2.2
|
32.6
|
1.0
|
|
SD
|
D:MET111
|
2.4
|
26.0
|
1.0
|
|
CE1
|
D:HIS65
|
2.8
|
35.4
|
1.0
|
|
C4D
|
D:HEC1158
|
2.9
|
28.3
|
1.0
|
|
C1C
|
D:HEC1158
|
3.0
|
26.4
|
1.0
|
|
C4B
|
D:HEC1158
|
3.0
|
25.7
|
1.0
|
|
C1A
|
D:HEC1158
|
3.0
|
28.4
|
1.0
|
|
C1D
|
D:HEC1158
|
3.0
|
27.9
|
1.0
|
|
C4C
|
D:HEC1158
|
3.1
|
26.1
|
1.0
|
|
C1B
|
D:HEC1158
|
3.1
|
27.5
|
1.0
|
|
C4A
|
D:HEC1158
|
3.2
|
27.5
|
1.0
|
|
CHC
|
D:HEC1158
|
3.3
|
25.9
|
1.0
|
|
CHA
|
D:HEC1158
|
3.3
|
29.5
|
1.0
|
|
CE
|
D:MET111
|
3.3
|
25.9
|
1.0
|
|
CD2
|
D:HIS65
|
3.4
|
34.0
|
1.0
|
|
CHD
|
D:HEC1158
|
3.4
|
24.4
|
1.0
|
|
CG
|
D:MET111
|
3.5
|
26.1
|
1.0
|
|
CHB
|
D:HEC1158
|
3.6
|
29.8
|
1.0
|
|
ND1
|
D:HIS65
|
4.0
|
35.7
|
1.0
|
|
CB
|
D:MET111
|
4.1
|
26.5
|
1.0
|
|
C3D
|
D:HEC1158
|
4.2
|
32.5
|
1.0
|
|
C2C
|
D:HEC1158
|
4.2
|
24.9
|
1.0
|
|
C2D
|
D:HEC1158
|
4.2
|
28.2
|
1.0
|
|
C3B
|
D:HEC1158
|
4.3
|
25.6
|
1.0
|
|
C3C
|
D:HEC1158
|
4.3
|
25.1
|
1.0
|
|
CG
|
D:HIS65
|
4.3
|
30.7
|
1.0
|
|
C2A
|
D:HEC1158
|
4.3
|
30.6
|
1.0
|
|
C2B
|
D:HEC1158
|
4.3
|
27.0
|
1.0
|
|
C3A
|
D:HEC1158
|
4.4
|
29.7
|
1.0
|
|
Iron binding site 7 out
of 12 in 2c1d
Go back to
Iron Binding Sites List in 2c1d
Iron binding site 7 out
of 12 in the Crystal Structure of Soxxa From P. Pantotrophus
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of Soxxa From P. Pantotrophus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe1291
b:25.1
occ:1.00
|
FE
|
E:HEC1291
|
0.0
|
25.1
|
1.0
|
|
NE2
|
E:HIS110
|
1.9
|
23.5
|
1.0
|
|
NA
|
E:HEC1291
|
2.0
|
20.9
|
1.0
|
|
NC
|
E:HEC1291
|
2.1
|
21.8
|
1.0
|
|
ND
|
E:HEC1291
|
2.1
|
25.2
|
1.0
|
|
NB
|
E:HEC1291
|
2.1
|
24.0
|
1.0
|
|
SG
|
E:CYS143
|
2.3
|
26.7
|
1.0
|
|
CE1
|
E:HIS110
|
2.9
|
27.2
|
1.0
|
|
CD2
|
E:HIS110
|
3.0
|
24.4
|
1.0
|
|
C4A
|
E:HEC1291
|
3.0
|
23.7
|
1.0
|
|
C1C
|
E:HEC1291
|
3.0
|
19.9
|
1.0
|
|
C1A
|
E:HEC1291
|
3.0
|
22.8
|
1.0
|
|
C4D
|
E:HEC1291
|
3.1
|
24.3
|
1.0
|
|
C4B
|
E:HEC1291
|
3.1
|
25.2
|
1.0
|
|
C1B
|
E:HEC1291
|
3.1
|
23.6
|
1.0
|
|
C4C
|
E:HEC1291
|
3.1
|
21.4
|
1.0
|
|
C1D
|
E:HEC1291
|
3.1
|
27.0
|
1.0
|
|
CHC
|
E:HEC1291
|
3.4
|
21.9
|
1.0
|
|
CHB
|
E:HEC1291
|
3.4
|
24.4
|
1.0
|
|
CHA
|
E:HEC1291
|
3.4
|
23.2
|
1.0
|
|
CHD
|
E:HEC1291
|
3.4
|
23.7
|
1.0
|
|
CB
|
E:CYS143
|
3.4
|
25.8
|
1.0
|
|
ND1
|
E:HIS110
|
4.0
|
24.8
|
1.0
|
|
CG
|
E:HIS110
|
4.1
|
24.7
|
1.0
|
|
C3A
|
E:HEC1291
|
4.3
|
21.9
|
1.0
|
|
C2A
|
E:HEC1291
|
4.3
|
22.4
|
1.0
|
|
C2C
|
E:HEC1291
|
4.3
|
2.0
|
1.0
|
|
C2B
|
E:HEC1291
|
4.3
|
24.6
|
1.0
|
|
C3B
|
E:HEC1291
|
4.3
|
24.4
|
1.0
|
|
C3C
|
E:HEC1291
|
4.3
|
18.8
|
1.0
|
|
C3D
|
E:HEC1291
|
4.3
|
26.1
|
1.0
|
|
C2D
|
E:HEC1291
|
4.3
|
25.6
|
1.0
|
|
O
|
E:HOH2180
|
4.5
|
23.8
|
1.0
|
|
CA
|
E:CYS143
|
4.8
|
26.6
|
1.0
|
|
NH1
|
E:ARG147
|
4.9
|
40.6
|
1.0
|
|
CD
|
E:ARG147
|
4.9
|
39.1
|
1.0
|
|
CE
|
E:MET116
|
4.9
|
32.3
|
1.0
|
|
Iron binding site 8 out
of 12 in 2c1d
Go back to
Iron Binding Sites List in 2c1d
Iron binding site 8 out
of 12 in the Crystal Structure of Soxxa From P. Pantotrophus
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of Soxxa From P. Pantotrophus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe1292
b:23.9
occ:1.00
|
FE
|
E:HEC1292
|
0.0
|
23.9
|
1.0
|
|
NB
|
E:HEC1292
|
2.0
|
22.1
|
1.0
|
|
NA
|
E:HEC1292
|
2.0
|
23.9
|
1.0
|
|
NE2
|
E:HIS210
|
2.0
|
21.8
|
1.0
|
|
ND
|
E:HEC1292
|
2.1
|
21.7
|
1.0
|
|
NC
|
E:HEC1292
|
2.1
|
22.6
|
1.0
|
|
SD
|
E:CSS251
|
2.2
|
27.1
|
1.0
|
|
C4B
|
E:HEC1292
|
3.0
|
23.0
|
1.0
|
|
C1A
|
E:HEC1292
|
3.0
|
22.5
|
1.0
|
|
C1B
|
E:HEC1292
|
3.0
|
23.5
|
1.0
|
|
CE1
|
E:HIS210
|
3.0
|
22.9
|
1.0
|
|
C4A
|
E:HEC1292
|
3.0
|
23.0
|
1.0
|
|
CD2
|
E:HIS210
|
3.0
|
21.7
|
1.0
|
|
C1C
|
E:HEC1292
|
3.0
|
24.3
|
1.0
|
|
C4D
|
E:HEC1292
|
3.1
|
22.9
|
1.0
|
|
C1D
|
E:HEC1292
|
3.1
|
24.5
|
1.0
|
|
C4C
|
E:HEC1292
|
3.1
|
24.2
|
1.0
|
|
CHC
|
E:HEC1292
|
3.4
|
22.7
|
1.0
|
|
CHB
|
E:HEC1292
|
3.4
|
23.4
|
1.0
|
|
CHA
|
E:HEC1292
|
3.4
|
23.6
|
1.0
|
|
CHD
|
E:HEC1292
|
3.5
|
22.7
|
1.0
|
|
SG
|
E:CSS251
|
3.6
|
28.9
|
1.0
|
|
ND1
|
E:HIS210
|
4.1
|
21.5
|
1.0
|
|
CG
|
E:HIS210
|
4.2
|
22.1
|
1.0
|
|
C2B
|
E:HEC1292
|
4.2
|
23.7
|
1.0
|
|
C3B
|
E:HEC1292
|
4.2
|
23.6
|
1.0
|
|
C3A
|
E:HEC1292
|
4.2
|
21.8
|
1.0
|
|
C2A
|
E:HEC1292
|
4.2
|
23.2
|
1.0
|
|
C2C
|
E:HEC1292
|
4.3
|
25.5
|
1.0
|
|
C3D
|
E:HEC1292
|
4.3
|
23.4
|
1.0
|
|
CB
|
E:CSS251
|
4.3
|
25.8
|
1.0
|
|
C3C
|
E:HEC1292
|
4.4
|
25.4
|
1.0
|
|
C2D
|
E:HEC1292
|
4.4
|
23.8
|
1.0
|
|
O
|
E:HOH2346
|
4.5
|
43.6
|
1.0
|
|
Iron binding site 9 out
of 12 in 2c1d
Go back to
Iron Binding Sites List in 2c1d
Iron binding site 9 out
of 12 in the Crystal Structure of Soxxa From P. Pantotrophus
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Crystal Structure of Soxxa From P. Pantotrophus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe1158
b:27.6
occ:1.00
|
FE
|
F:HEC1158
|
0.0
|
27.6
|
1.0
|
|
ND
|
F:HEC1158
|
2.0
|
26.6
|
1.0
|
|
NC
|
F:HEC1158
|
2.1
|
26.6
|
1.0
|
|
NB
|
F:HEC1158
|
2.1
|
27.5
|
1.0
|
|
NA
|
F:HEC1158
|
2.1
|
25.7
|
1.0
|
|
NE2
|
F:HIS65
|
2.1
|
33.1
|
1.0
|
|
SD
|
F:MET111
|
2.3
|
26.1
|
1.0
|
|
CE1
|
F:HIS65
|
2.9
|
36.0
|
1.0
|
|
C4D
|
F:HEC1158
|
3.0
|
28.7
|
1.0
|
|
C1D
|
F:HEC1158
|
3.0
|
27.2
|
1.0
|
|
C1A
|
F:HEC1158
|
3.0
|
27.1
|
1.0
|
|
C4C
|
F:HEC1158
|
3.1
|
26.2
|
1.0
|
|
C1C
|
F:HEC1158
|
3.1
|
26.4
|
1.0
|
|
C4B
|
F:HEC1158
|
3.1
|
26.1
|
1.0
|
|
C1B
|
F:HEC1158
|
3.1
|
28.1
|
1.0
|
|
C4A
|
F:HEC1158
|
3.1
|
26.6
|
1.0
|
|
CD2
|
F:HIS65
|
3.2
|
35.6
|
1.0
|
|
CHA
|
F:HEC1158
|
3.3
|
25.5
|
1.0
|
|
CE
|
F:MET111
|
3.3
|
26.0
|
1.0
|
|
CHD
|
F:HEC1158
|
3.4
|
26.4
|
1.0
|
|
CG
|
F:MET111
|
3.4
|
25.8
|
1.0
|
|
CHC
|
F:HEC1158
|
3.4
|
24.9
|
1.0
|
|
CHB
|
F:HEC1158
|
3.5
|
27.9
|
1.0
|
|
CB
|
F:MET111
|
4.0
|
26.0
|
1.0
|
|
ND1
|
F:HIS65
|
4.1
|
37.9
|
1.0
|
|
C2D
|
F:HEC1158
|
4.2
|
27.5
|
1.0
|
|
C3D
|
F:HEC1158
|
4.2
|
29.7
|
1.0
|
|
CG
|
F:HIS65
|
4.2
|
30.9
|
1.0
|
|
C2A
|
F:HEC1158
|
4.3
|
29.0
|
1.0
|
|
C3C
|
F:HEC1158
|
4.3
|
25.4
|
1.0
|
|
C2C
|
F:HEC1158
|
4.3
|
25.7
|
1.0
|
|
C3B
|
F:HEC1158
|
4.3
|
26.1
|
1.0
|
|
C2B
|
F:HEC1158
|
4.3
|
27.8
|
1.0
|
|
C3A
|
F:HEC1158
|
4.3
|
27.2
|
1.0
|
|
Iron binding site 10 out
of 12 in 2c1d
Go back to
Iron Binding Sites List in 2c1d
Iron binding site 10 out
of 12 in the Crystal Structure of Soxxa From P. Pantotrophus
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Crystal Structure of Soxxa From P. Pantotrophus within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe1291
b:26.2
occ:1.00
|
FE
|
G:HEC1291
|
0.0
|
26.2
|
1.0
|
|
NB
|
G:HEC1291
|
2.0
|
25.5
|
1.0
|
|
NA
|
G:HEC1291
|
2.0
|
25.0
|
1.0
|
|
NE2
|
G:HIS110
|
2.1
|
26.8
|
1.0
|
|
NC
|
G:HEC1291
|
2.1
|
21.9
|
1.0
|
|
ND
|
G:HEC1291
|
2.2
|
26.5
|
1.0
|
|
SG
|
G:CYS143
|
2.3
|
28.4
|
1.0
|
|
C1B
|
G:HEC1291
|
3.0
|
26.8
|
1.0
|
|
C4B
|
G:HEC1291
|
3.0
|
26.2
|
1.0
|
|
C4A
|
G:HEC1291
|
3.0
|
25.1
|
1.0
|
|
CE1
|
G:HIS110
|
3.0
|
27.4
|
1.0
|
|
C1A
|
G:HEC1291
|
3.1
|
25.4
|
1.0
|
|
CD2
|
G:HIS110
|
3.1
|
25.9
|
1.0
|
|
C1C
|
G:HEC1291
|
3.1
|
19.9
|
1.0
|
|
C4C
|
G:HEC1291
|
3.1
|
21.1
|
1.0
|
|
C1D
|
G:HEC1291
|
3.1
|
26.3
|
1.0
|
|
C4D
|
G:HEC1291
|
3.1
|
26.0
|
1.0
|
|
CHB
|
G:HEC1291
|
3.4
|
26.9
|
1.0
|
|
CB
|
G:CYS143
|
3.4
|
28.4
|
1.0
|
|
CHC
|
G:HEC1291
|
3.4
|
25.5
|
1.0
|
|
CHD
|
G:HEC1291
|
3.4
|
24.6
|
1.0
|
|
CHA
|
G:HEC1291
|
3.5
|
24.4
|
1.0
|
|
ND1
|
G:HIS110
|
4.2
|
27.4
|
1.0
|
|
CG
|
G:HIS110
|
4.2
|
26.8
|
1.0
|
|
C2B
|
G:HEC1291
|
4.2
|
26.5
|
1.0
|
|
C3B
|
G:HEC1291
|
4.2
|
26.4
|
1.0
|
|
C3A
|
G:HEC1291
|
4.2
|
24.7
|
1.0
|
|
C2A
|
G:HEC1291
|
4.3
|
24.4
|
1.0
|
|
C2C
|
G:HEC1291
|
4.3
|
2.0
|
1.0
|
|
C3C
|
G:HEC1291
|
4.3
|
20.9
|
1.0
|
|
C2D
|
G:HEC1291
|
4.4
|
24.9
|
1.0
|
|
C3D
|
G:HEC1291
|
4.4
|
26.7
|
1.0
|
|
O
|
G:HOH2177
|
4.5
|
24.5
|
1.0
|
|
CA
|
G:CYS143
|
4.7
|
28.4
|
1.0
|
|
NH1
|
G:ARG147
|
4.8
|
41.7
|
1.0
|
|
Reference:
T.Dambe,
A.Quentmeier,
D.Rother,
C.Friedrich,
A.J.Scheidig.
Structure of the Cytochrome Complex Soxxa of Paracoccus Pantotrophus, A Heme Enzyme Initiating Chemotrophic Sulfur Oxidation. J.Struct.Biol. V. 152 229 2005.
ISSN: ISSN 1047-8477
PubMed: 16297640
DOI: 10.1016/J.JSB.2005.09.002
Page generated: Sun Dec 13 14:41:24 2020
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