Iron in PDB 2c1u: Crystal Structure of the Di-Haem Cytochrome C Peroxidase From Paracoccus Pantotrophus - Oxidised Form
Enzymatic activity of Crystal Structure of the Di-Haem Cytochrome C Peroxidase From Paracoccus Pantotrophus - Oxidised Form
All present enzymatic activity of Crystal Structure of the Di-Haem Cytochrome C Peroxidase From Paracoccus Pantotrophus - Oxidised Form:
1.11.1.5;
Protein crystallography data
The structure of Crystal Structure of the Di-Haem Cytochrome C Peroxidase From Paracoccus Pantotrophus - Oxidised Form, PDB code: 2c1u
was solved by
A.Echalier,
V.Fulop,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.88 /
1.95
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
78.800,
51.100,
167.900,
90.00,
98.20,
90.00
|
R / Rfree (%)
|
16.9 /
22
|
Other elements in 2c1u:
The structure of Crystal Structure of the Di-Haem Cytochrome C Peroxidase From Paracoccus Pantotrophus - Oxidised Form also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of the Di-Haem Cytochrome C Peroxidase From Paracoccus Pantotrophus - Oxidised Form
(pdb code 2c1u). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the
Crystal Structure of the Di-Haem Cytochrome C Peroxidase From Paracoccus Pantotrophus - Oxidised Form, PDB code: 2c1u:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Iron binding site 1 out
of 8 in 2c1u
Go back to
Iron Binding Sites List in 2c1u
Iron binding site 1 out
of 8 in the Crystal Structure of the Di-Haem Cytochrome C Peroxidase From Paracoccus Pantotrophus - Oxidised Form
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of the Di-Haem Cytochrome C Peroxidase From Paracoccus Pantotrophus - Oxidised Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe401
b:25.2
occ:1.00
|
FE
|
A:HEC401
|
0.0
|
25.2
|
1.0
|
NE2
|
A:HIS85
|
2.0
|
26.6
|
1.0
|
ND
|
A:HEC401
|
2.0
|
26.4
|
1.0
|
NE2
|
A:HIS69
|
2.0
|
25.3
|
1.0
|
NC
|
A:HEC401
|
2.0
|
25.7
|
1.0
|
NB
|
A:HEC401
|
2.0
|
26.2
|
1.0
|
NA
|
A:HEC401
|
2.1
|
24.2
|
1.0
|
CE1
|
A:HIS85
|
2.9
|
30.7
|
1.0
|
CE1
|
A:HIS69
|
3.0
|
25.1
|
1.0
|
C1D
|
A:HEC401
|
3.0
|
23.1
|
1.0
|
C1B
|
A:HEC401
|
3.0
|
26.9
|
1.0
|
C4A
|
A:HEC401
|
3.0
|
25.5
|
1.0
|
C4D
|
A:HEC401
|
3.0
|
24.6
|
1.0
|
C4C
|
A:HEC401
|
3.1
|
25.9
|
1.0
|
CD2
|
A:HIS69
|
3.1
|
25.8
|
1.0
|
C1A
|
A:HEC401
|
3.1
|
26.0
|
1.0
|
C1C
|
A:HEC401
|
3.1
|
27.9
|
1.0
|
CD2
|
A:HIS85
|
3.1
|
27.5
|
1.0
|
C4B
|
A:HEC401
|
3.1
|
26.7
|
1.0
|
CHB
|
A:HEC401
|
3.3
|
25.9
|
1.0
|
CHD
|
A:HEC401
|
3.4
|
25.1
|
1.0
|
CHA
|
A:HEC401
|
3.4
|
25.3
|
1.0
|
CHC
|
A:HEC401
|
3.4
|
27.8
|
1.0
|
ND1
|
A:HIS85
|
4.1
|
32.7
|
1.0
|
ND1
|
A:HIS69
|
4.1
|
21.8
|
1.0
|
CG
|
A:HIS85
|
4.2
|
31.2
|
1.0
|
CG
|
A:HIS69
|
4.2
|
25.2
|
1.0
|
C2D
|
A:HEC401
|
4.2
|
24.6
|
1.0
|
C3D
|
A:HEC401
|
4.2
|
23.4
|
1.0
|
C2B
|
A:HEC401
|
4.3
|
27.3
|
1.0
|
C3A
|
A:HEC401
|
4.3
|
26.6
|
1.0
|
C3C
|
A:HEC401
|
4.3
|
25.7
|
1.0
|
C2C
|
A:HEC401
|
4.3
|
25.9
|
1.0
|
C2A
|
A:HEC401
|
4.3
|
26.5
|
1.0
|
C3B
|
A:HEC401
|
4.3
|
28.0
|
1.0
|
|
Iron binding site 2 out
of 8 in 2c1u
Go back to
Iron Binding Sites List in 2c1u
Iron binding site 2 out
of 8 in the Crystal Structure of the Di-Haem Cytochrome C Peroxidase From Paracoccus Pantotrophus - Oxidised Form
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of the Di-Haem Cytochrome C Peroxidase From Paracoccus Pantotrophus - Oxidised Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe402
b:30.4
occ:1.00
|
FE
|
A:HEC402
|
0.0
|
30.4
|
1.0
|
NB
|
A:HEC402
|
2.0
|
27.4
|
1.0
|
NC
|
A:HEC402
|
2.0
|
29.6
|
1.0
|
NE2
|
A:HIS215
|
2.0
|
26.6
|
1.0
|
ND
|
A:HEC402
|
2.1
|
27.7
|
1.0
|
NA
|
A:HEC402
|
2.1
|
27.9
|
1.0
|
SD
|
A:MET289
|
2.3
|
36.9
|
1.0
|
C4B
|
A:HEC402
|
2.9
|
29.0
|
1.0
|
C1C
|
A:HEC402
|
3.0
|
27.4
|
1.0
|
CE1
|
A:HIS215
|
3.0
|
28.0
|
1.0
|
CD2
|
A:HIS215
|
3.0
|
29.7
|
1.0
|
C1D
|
A:HEC402
|
3.1
|
26.1
|
1.0
|
C4D
|
A:HEC402
|
3.1
|
28.2
|
1.0
|
C1B
|
A:HEC402
|
3.1
|
27.9
|
1.0
|
C4C
|
A:HEC402
|
3.1
|
29.3
|
1.0
|
C1A
|
A:HEC402
|
3.1
|
27.5
|
1.0
|
C4A
|
A:HEC402
|
3.1
|
27.2
|
1.0
|
CHC
|
A:HEC402
|
3.3
|
28.7
|
1.0
|
CHD
|
A:HEC402
|
3.5
|
28.5
|
1.0
|
CHA
|
A:HEC402
|
3.5
|
27.9
|
1.0
|
CHB
|
A:HEC402
|
3.5
|
29.5
|
1.0
|
CG
|
A:MET289
|
3.5
|
32.2
|
1.0
|
CE
|
A:MET289
|
3.6
|
31.2
|
1.0
|
ND1
|
A:HIS215
|
4.1
|
29.8
|
1.0
|
CG
|
A:HIS215
|
4.2
|
29.9
|
1.0
|
C3B
|
A:HEC402
|
4.2
|
29.6
|
1.0
|
C2B
|
A:HEC402
|
4.2
|
28.9
|
1.0
|
C2C
|
A:HEC402
|
4.2
|
29.1
|
1.0
|
CB
|
A:MET289
|
4.3
|
32.9
|
1.0
|
C2D
|
A:HEC402
|
4.3
|
28.0
|
1.0
|
C3C
|
A:HEC402
|
4.3
|
28.5
|
1.0
|
C3D
|
A:HEC402
|
4.3
|
28.9
|
1.0
|
C2A
|
A:HEC402
|
4.4
|
26.8
|
1.0
|
C3A
|
A:HEC402
|
4.4
|
28.1
|
1.0
|
|
Iron binding site 3 out
of 8 in 2c1u
Go back to
Iron Binding Sites List in 2c1u
Iron binding site 3 out
of 8 in the Crystal Structure of the Di-Haem Cytochrome C Peroxidase From Paracoccus Pantotrophus - Oxidised Form
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of the Di-Haem Cytochrome C Peroxidase From Paracoccus Pantotrophus - Oxidised Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe401
b:26.4
occ:1.00
|
FE
|
B:HEC401
|
0.0
|
26.4
|
1.0
|
NB
|
B:HEC401
|
2.0
|
25.8
|
1.0
|
NE2
|
B:HIS85
|
2.0
|
27.9
|
1.0
|
NC
|
B:HEC401
|
2.0
|
25.1
|
1.0
|
ND
|
B:HEC401
|
2.0
|
21.4
|
1.0
|
NE2
|
B:HIS69
|
2.0
|
23.1
|
1.0
|
NA
|
B:HEC401
|
2.1
|
24.9
|
1.0
|
CE1
|
B:HIS85
|
2.8
|
29.4
|
1.0
|
CD2
|
B:HIS69
|
3.0
|
22.2
|
1.0
|
C4B
|
B:HEC401
|
3.0
|
24.8
|
1.0
|
C1C
|
B:HEC401
|
3.0
|
23.8
|
1.0
|
C1D
|
B:HEC401
|
3.0
|
22.5
|
1.0
|
C4D
|
B:HEC401
|
3.0
|
25.9
|
1.0
|
C1B
|
B:HEC401
|
3.1
|
26.2
|
1.0
|
CE1
|
B:HIS69
|
3.1
|
20.2
|
1.0
|
C4C
|
B:HEC401
|
3.1
|
26.2
|
1.0
|
C1A
|
B:HEC401
|
3.1
|
27.0
|
1.0
|
C4A
|
B:HEC401
|
3.1
|
26.7
|
1.0
|
CD2
|
B:HIS85
|
3.2
|
30.1
|
1.0
|
CHC
|
B:HEC401
|
3.3
|
23.3
|
1.0
|
CHD
|
B:HEC401
|
3.4
|
24.1
|
1.0
|
CHA
|
B:HEC401
|
3.4
|
25.5
|
1.0
|
CHB
|
B:HEC401
|
3.5
|
27.0
|
1.0
|
ND1
|
B:HIS85
|
4.0
|
30.2
|
1.0
|
CG
|
B:HIS69
|
4.1
|
23.4
|
1.0
|
ND1
|
B:HIS69
|
4.1
|
24.8
|
1.0
|
CG
|
B:HIS85
|
4.2
|
33.0
|
1.0
|
C3B
|
B:HEC401
|
4.2
|
25.3
|
1.0
|
C2B
|
B:HEC401
|
4.2
|
26.4
|
1.0
|
C2C
|
B:HEC401
|
4.2
|
24.0
|
1.0
|
C3D
|
B:HEC401
|
4.3
|
21.6
|
1.0
|
C2D
|
B:HEC401
|
4.3
|
22.8
|
1.0
|
C3C
|
B:HEC401
|
4.3
|
26.7
|
1.0
|
C3A
|
B:HEC401
|
4.4
|
26.4
|
1.0
|
C2A
|
B:HEC401
|
4.4
|
27.9
|
1.0
|
|
Iron binding site 4 out
of 8 in 2c1u
Go back to
Iron Binding Sites List in 2c1u
Iron binding site 4 out
of 8 in the Crystal Structure of the Di-Haem Cytochrome C Peroxidase From Paracoccus Pantotrophus - Oxidised Form
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of the Di-Haem Cytochrome C Peroxidase From Paracoccus Pantotrophus - Oxidised Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe402
b:28.1
occ:1.00
|
FE
|
B:HEC402
|
0.0
|
28.1
|
1.0
|
NE2
|
B:HIS215
|
2.0
|
25.0
|
1.0
|
NA
|
B:HEC402
|
2.1
|
28.1
|
1.0
|
ND
|
B:HEC402
|
2.1
|
29.0
|
1.0
|
NB
|
B:HEC402
|
2.1
|
28.8
|
1.0
|
NC
|
B:HEC402
|
2.1
|
27.5
|
1.0
|
SD
|
B:MET289
|
2.4
|
39.5
|
1.0
|
CE1
|
B:HIS215
|
3.0
|
28.9
|
1.0
|
CD2
|
B:HIS215
|
3.0
|
27.3
|
1.0
|
C1A
|
B:HEC402
|
3.0
|
28.6
|
1.0
|
C4D
|
B:HEC402
|
3.1
|
30.5
|
1.0
|
C4A
|
B:HEC402
|
3.1
|
27.7
|
1.0
|
C1D
|
B:HEC402
|
3.1
|
29.4
|
1.0
|
C1B
|
B:HEC402
|
3.1
|
29.9
|
1.0
|
C4B
|
B:HEC402
|
3.1
|
30.8
|
1.0
|
C1C
|
B:HEC402
|
3.1
|
28.9
|
1.0
|
C4C
|
B:HEC402
|
3.1
|
30.2
|
1.0
|
CHB
|
B:HEC402
|
3.4
|
30.0
|
1.0
|
CHA
|
B:HEC402
|
3.4
|
28.9
|
1.0
|
CG
|
B:MET289
|
3.4
|
35.4
|
1.0
|
CHD
|
B:HEC402
|
3.4
|
29.6
|
1.0
|
CHC
|
B:HEC402
|
3.5
|
28.4
|
1.0
|
CE
|
B:MET289
|
3.5
|
39.9
|
1.0
|
ND1
|
B:HIS215
|
4.1
|
25.8
|
1.0
|
CG
|
B:HIS215
|
4.2
|
31.0
|
1.0
|
CB
|
B:MET289
|
4.2
|
35.3
|
1.0
|
C3D
|
B:HEC402
|
4.3
|
30.8
|
1.0
|
C3A
|
B:HEC402
|
4.3
|
29.4
|
1.0
|
C2A
|
B:HEC402
|
4.3
|
29.0
|
1.0
|
C2D
|
B:HEC402
|
4.3
|
29.8
|
1.0
|
C2B
|
B:HEC402
|
4.3
|
29.7
|
1.0
|
C3B
|
B:HEC402
|
4.3
|
30.9
|
1.0
|
C2C
|
B:HEC402
|
4.3
|
27.2
|
1.0
|
C3C
|
B:HEC402
|
4.4
|
27.6
|
1.0
|
|
Iron binding site 5 out
of 8 in 2c1u
Go back to
Iron Binding Sites List in 2c1u
Iron binding site 5 out
of 8 in the Crystal Structure of the Di-Haem Cytochrome C Peroxidase From Paracoccus Pantotrophus - Oxidised Form
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of the Di-Haem Cytochrome C Peroxidase From Paracoccus Pantotrophus - Oxidised Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe401
b:24.1
occ:1.00
|
FE
|
C:HEC401
|
0.0
|
24.1
|
1.0
|
NE2
|
C:HIS85
|
2.0
|
24.5
|
1.0
|
NC
|
C:HEC401
|
2.0
|
21.5
|
1.0
|
NB
|
C:HEC401
|
2.0
|
25.9
|
1.0
|
NE2
|
C:HIS69
|
2.0
|
26.1
|
1.0
|
NA
|
C:HEC401
|
2.1
|
20.6
|
1.0
|
ND
|
C:HEC401
|
2.1
|
22.5
|
1.0
|
CD2
|
C:HIS85
|
3.0
|
27.5
|
1.0
|
CE1
|
C:HIS85
|
3.0
|
26.2
|
1.0
|
CE1
|
C:HIS69
|
3.0
|
23.7
|
1.0
|
C1B
|
C:HEC401
|
3.0
|
23.8
|
1.0
|
C1A
|
C:HEC401
|
3.0
|
25.1
|
1.0
|
C4B
|
C:HEC401
|
3.0
|
24.4
|
1.0
|
C4D
|
C:HEC401
|
3.0
|
23.9
|
1.0
|
C1C
|
C:HEC401
|
3.0
|
26.9
|
1.0
|
C4C
|
C:HEC401
|
3.0
|
23.0
|
1.0
|
C4A
|
C:HEC401
|
3.1
|
23.1
|
1.0
|
CD2
|
C:HIS69
|
3.1
|
26.8
|
1.0
|
C1D
|
C:HEC401
|
3.1
|
23.6
|
1.0
|
CHA
|
C:HEC401
|
3.4
|
23.4
|
1.0
|
CHC
|
C:HEC401
|
3.4
|
27.7
|
1.0
|
CHB
|
C:HEC401
|
3.4
|
24.8
|
1.0
|
CHD
|
C:HEC401
|
3.4
|
23.4
|
1.0
|
ND1
|
C:HIS85
|
4.1
|
28.0
|
1.0
|
CG
|
C:HIS85
|
4.1
|
31.3
|
1.0
|
ND1
|
C:HIS69
|
4.1
|
25.4
|
1.0
|
CG
|
C:HIS69
|
4.2
|
24.2
|
1.0
|
C2B
|
C:HEC401
|
4.2
|
24.0
|
1.0
|
C2A
|
C:HEC401
|
4.3
|
24.6
|
1.0
|
C3A
|
C:HEC401
|
4.3
|
25.0
|
1.0
|
C3B
|
C:HEC401
|
4.3
|
26.5
|
1.0
|
C2D
|
C:HEC401
|
4.3
|
23.8
|
1.0
|
C3D
|
C:HEC401
|
4.3
|
23.5
|
1.0
|
C3C
|
C:HEC401
|
4.3
|
20.7
|
1.0
|
C2C
|
C:HEC401
|
4.3
|
19.7
|
1.0
|
|
Iron binding site 6 out
of 8 in 2c1u
Go back to
Iron Binding Sites List in 2c1u
Iron binding site 6 out
of 8 in the Crystal Structure of the Di-Haem Cytochrome C Peroxidase From Paracoccus Pantotrophus - Oxidised Form
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of the Di-Haem Cytochrome C Peroxidase From Paracoccus Pantotrophus - Oxidised Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe402
b:30.3
occ:1.00
|
FE
|
C:HEC402
|
0.0
|
30.3
|
1.0
|
NB
|
C:HEC402
|
2.0
|
29.8
|
1.0
|
NE2
|
C:HIS215
|
2.0
|
28.6
|
1.0
|
NC
|
C:HEC402
|
2.1
|
28.6
|
1.0
|
NA
|
C:HEC402
|
2.1
|
27.6
|
1.0
|
ND
|
C:HEC402
|
2.1
|
29.4
|
1.0
|
SD
|
C:MET289
|
2.3
|
36.0
|
1.0
|
CE1
|
C:HIS215
|
3.0
|
29.3
|
1.0
|
C4B
|
C:HEC402
|
3.0
|
29.4
|
1.0
|
C1B
|
C:HEC402
|
3.0
|
30.7
|
1.0
|
C1C
|
C:HEC402
|
3.0
|
29.2
|
1.0
|
CD2
|
C:HIS215
|
3.1
|
27.6
|
1.0
|
C4A
|
C:HEC402
|
3.1
|
28.2
|
1.0
|
C4D
|
C:HEC402
|
3.1
|
30.6
|
1.0
|
C1D
|
C:HEC402
|
3.1
|
28.8
|
1.0
|
C1A
|
C:HEC402
|
3.1
|
31.4
|
1.0
|
C4C
|
C:HEC402
|
3.1
|
29.5
|
1.0
|
CE
|
C:MET289
|
3.3
|
33.5
|
1.0
|
CHC
|
C:HEC402
|
3.4
|
28.9
|
1.0
|
CG
|
C:MET289
|
3.4
|
33.9
|
1.0
|
CHB
|
C:HEC402
|
3.4
|
28.4
|
1.0
|
CHA
|
C:HEC402
|
3.5
|
29.7
|
1.0
|
CHD
|
C:HEC402
|
3.5
|
28.9
|
1.0
|
ND1
|
C:HIS215
|
4.1
|
30.5
|
1.0
|
CG
|
C:HIS215
|
4.2
|
29.8
|
1.0
|
C3B
|
C:HEC402
|
4.2
|
28.1
|
1.0
|
C2B
|
C:HEC402
|
4.2
|
29.4
|
1.0
|
CB
|
C:MET289
|
4.3
|
31.5
|
1.0
|
C2C
|
C:HEC402
|
4.3
|
28.5
|
1.0
|
C2D
|
C:HEC402
|
4.3
|
28.5
|
1.0
|
C3A
|
C:HEC402
|
4.3
|
30.1
|
1.0
|
C3D
|
C:HEC402
|
4.3
|
29.5
|
1.0
|
C2A
|
C:HEC402
|
4.3
|
28.8
|
1.0
|
C3C
|
C:HEC402
|
4.4
|
30.2
|
1.0
|
|
Iron binding site 7 out
of 8 in 2c1u
Go back to
Iron Binding Sites List in 2c1u
Iron binding site 7 out
of 8 in the Crystal Structure of the Di-Haem Cytochrome C Peroxidase From Paracoccus Pantotrophus - Oxidised Form
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of the Di-Haem Cytochrome C Peroxidase From Paracoccus Pantotrophus - Oxidised Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe401
b:25.2
occ:1.00
|
FE
|
D:HEC401
|
0.0
|
25.2
|
1.0
|
NE2
|
D:HIS85
|
2.0
|
23.5
|
1.0
|
NC
|
D:HEC401
|
2.0
|
25.8
|
1.0
|
NA
|
D:HEC401
|
2.0
|
24.7
|
1.0
|
NE2
|
D:HIS69
|
2.0
|
23.2
|
1.0
|
NB
|
D:HEC401
|
2.1
|
24.4
|
1.0
|
ND
|
D:HEC401
|
2.1
|
23.4
|
1.0
|
C1C
|
D:HEC401
|
3.0
|
23.9
|
1.0
|
CE1
|
D:HIS85
|
3.0
|
26.0
|
1.0
|
CD2
|
D:HIS85
|
3.0
|
26.6
|
1.0
|
CD2
|
D:HIS69
|
3.0
|
24.0
|
1.0
|
C4A
|
D:HEC401
|
3.0
|
25.8
|
1.0
|
C4B
|
D:HEC401
|
3.0
|
23.3
|
1.0
|
CE1
|
D:HIS69
|
3.0
|
23.0
|
1.0
|
C1D
|
D:HEC401
|
3.1
|
24.9
|
1.0
|
C1B
|
D:HEC401
|
3.1
|
24.8
|
1.0
|
C1A
|
D:HEC401
|
3.1
|
27.8
|
1.0
|
C4C
|
D:HEC401
|
3.1
|
27.3
|
1.0
|
C4D
|
D:HEC401
|
3.1
|
27.7
|
1.0
|
CHC
|
D:HEC401
|
3.3
|
24.3
|
1.0
|
CHB
|
D:HEC401
|
3.4
|
27.5
|
1.0
|
CHD
|
D:HEC401
|
3.4
|
25.5
|
1.0
|
CHA
|
D:HEC401
|
3.5
|
26.2
|
1.0
|
ND1
|
D:HIS85
|
4.1
|
25.7
|
1.0
|
CG
|
D:HIS85
|
4.1
|
32.1
|
1.0
|
ND1
|
D:HIS69
|
4.2
|
26.5
|
1.0
|
CG
|
D:HIS69
|
4.2
|
23.5
|
1.0
|
C2C
|
D:HEC401
|
4.2
|
25.9
|
1.0
|
C3A
|
D:HEC401
|
4.3
|
29.6
|
1.0
|
C2D
|
D:HEC401
|
4.3
|
26.4
|
1.0
|
C2B
|
D:HEC401
|
4.3
|
26.3
|
1.0
|
C2A
|
D:HEC401
|
4.3
|
29.5
|
1.0
|
C3C
|
D:HEC401
|
4.3
|
24.0
|
1.0
|
C3B
|
D:HEC401
|
4.3
|
23.9
|
1.0
|
C3D
|
D:HEC401
|
4.3
|
23.6
|
1.0
|
|
Iron binding site 8 out
of 8 in 2c1u
Go back to
Iron Binding Sites List in 2c1u
Iron binding site 8 out
of 8 in the Crystal Structure of the Di-Haem Cytochrome C Peroxidase From Paracoccus Pantotrophus - Oxidised Form
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of the Di-Haem Cytochrome C Peroxidase From Paracoccus Pantotrophus - Oxidised Form within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe402
b:29.7
occ:1.00
|
FE
|
D:HEC402
|
0.0
|
29.7
|
1.0
|
NB
|
D:HEC402
|
2.0
|
30.1
|
1.0
|
NE2
|
D:HIS215
|
2.0
|
30.0
|
1.0
|
ND
|
D:HEC402
|
2.1
|
29.8
|
1.0
|
NA
|
D:HEC402
|
2.1
|
29.6
|
1.0
|
NC
|
D:HEC402
|
2.1
|
29.5
|
1.0
|
SD
|
D:MET289
|
2.3
|
36.8
|
1.0
|
C4B
|
D:HEC402
|
3.0
|
29.9
|
1.0
|
CE1
|
D:HIS215
|
3.0
|
29.9
|
1.0
|
CD2
|
D:HIS215
|
3.0
|
30.3
|
1.0
|
C1B
|
D:HEC402
|
3.0
|
28.9
|
1.0
|
C1A
|
D:HEC402
|
3.0
|
29.8
|
1.0
|
C4D
|
D:HEC402
|
3.1
|
32.2
|
1.0
|
C1C
|
D:HEC402
|
3.1
|
30.7
|
1.0
|
C1D
|
D:HEC402
|
3.1
|
31.2
|
1.0
|
C4A
|
D:HEC402
|
3.1
|
28.6
|
1.0
|
C4C
|
D:HEC402
|
3.1
|
29.6
|
1.0
|
CHC
|
D:HEC402
|
3.4
|
30.8
|
1.0
|
CHA
|
D:HEC402
|
3.4
|
29.4
|
1.0
|
CHB
|
D:HEC402
|
3.5
|
30.1
|
1.0
|
CHD
|
D:HEC402
|
3.5
|
30.0
|
1.0
|
CG
|
D:MET289
|
3.5
|
34.8
|
1.0
|
CE
|
D:MET289
|
3.5
|
38.5
|
1.0
|
ND1
|
D:HIS215
|
4.1
|
30.1
|
1.0
|
CG
|
D:HIS215
|
4.2
|
29.5
|
1.0
|
C3B
|
D:HEC402
|
4.2
|
29.6
|
1.0
|
C2B
|
D:HEC402
|
4.2
|
30.3
|
1.0
|
CB
|
D:MET289
|
4.3
|
34.9
|
1.0
|
C2A
|
D:HEC402
|
4.3
|
27.5
|
1.0
|
C2C
|
D:HEC402
|
4.3
|
30.0
|
1.0
|
C3D
|
D:HEC402
|
4.3
|
31.3
|
1.0
|
C2D
|
D:HEC402
|
4.3
|
31.1
|
1.0
|
C3A
|
D:HEC402
|
4.3
|
29.9
|
1.0
|
C3C
|
D:HEC402
|
4.3
|
30.3
|
1.0
|
|
Reference:
A.Echalier,
C.F.Goodhew,
G.W.Pettigrew,
V.Fulop.
Activation and Catalysis of the Di-Heme Cytochrome C Peroxidase From Paracoccus Pantotrophus Structure V. 14 107 2006.
ISSN: ISSN 0969-2126
PubMed: 16407070
DOI: 10.1016/J.STR.2005.09.011
Page generated: Sat Aug 3 19:53:48 2024
|