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Iron in PDB 2c6h: Crystal Structure of Yc-17-Bound Cytochrome P450 Pikc (CYP107L1)

Protein crystallography data

The structure of Crystal Structure of Yc-17-Bound Cytochrome P450 Pikc (CYP107L1), PDB code: 2c6h was solved by D.H.Sherman, S.Li, L.V.Yermalitskaya, Y.Kim, J.A.Smith, M.R.Waterman, L.M.Podust, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.56 / 2.35
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 60.457, 104.700, 153.619, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 23.1

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Yc-17-Bound Cytochrome P450 Pikc (CYP107L1) (pdb code 2c6h). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Yc-17-Bound Cytochrome P450 Pikc (CYP107L1), PDB code: 2c6h:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 2c6h

Go back to Iron Binding Sites List in 2c6h
Iron binding site 1 out of 2 in the Crystal Structure of Yc-17-Bound Cytochrome P450 Pikc (CYP107L1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Yc-17-Bound Cytochrome P450 Pikc (CYP107L1) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1407

b:20.2
occ:1.00
FE A:HEM1407 0.0 20.2 1.0
NA A:HEM1407 2.0 14.5 1.0
NC A:HEM1407 2.0 15.6 1.0
ND A:HEM1407 2.0 15.3 1.0
NB A:HEM1407 2.0 15.4 1.0
SG A:CYS354 2.4 18.7 1.0
C1A A:HEM1407 3.0 14.3 1.0
C4A A:HEM1407 3.0 13.4 1.0
C4C A:HEM1407 3.0 17.4 1.0
C4D A:HEM1407 3.1 15.3 1.0
C1D A:HEM1407 3.1 14.4 1.0
C1C A:HEM1407 3.1 17.3 1.0
C1B A:HEM1407 3.1 13.5 1.0
C4B A:HEM1407 3.1 15.6 1.0
CB A:CYS354 3.4 17.9 1.0
CHA A:HEM1407 3.4 14.1 1.0
CHB A:HEM1407 3.4 14.1 1.0
CHD A:HEM1407 3.4 16.0 1.0
CHC A:HEM1407 3.4 14.7 1.0
O A:ALA243 4.0 33.3 1.0
CA A:CYS354 4.1 16.6 1.0
C3A A:HEM1407 4.3 13.8 1.0
C2A A:HEM1407 4.3 14.6 1.0
C3C A:HEM1407 4.3 18.7 1.0
C2D A:HEM1407 4.3 13.9 1.0
C2B A:HEM1407 4.3 13.3 1.0
C2C A:HEM1407 4.3 18.3 1.0
C3D A:HEM1407 4.3 15.3 1.0
C3B A:HEM1407 4.3 16.3 1.0
C1 A:PXI1408 4.5 30.1 1.0
C A:ALA243 4.7 32.0 1.0
N A:GLY356 4.8 18.0 1.0
C A:CYS354 4.8 16.1 1.0
N A:ILE355 4.8 16.4 1.0
CB A:ALA243 4.9 30.9 1.0

Iron binding site 2 out of 2 in 2c6h

Go back to Iron Binding Sites List in 2c6h
Iron binding site 2 out of 2 in the Crystal Structure of Yc-17-Bound Cytochrome P450 Pikc (CYP107L1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Yc-17-Bound Cytochrome P450 Pikc (CYP107L1) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1408

b:21.8
occ:1.00
FE B:HEM1408 0.0 21.8 1.0
NC B:HEM1408 2.0 21.7 1.0
ND B:HEM1408 2.0 19.5 1.0
NB B:HEM1408 2.0 19.9 1.0
NA B:HEM1408 2.0 19.0 1.0
SG B:CYS354 2.5 18.8 1.0
C1D B:HEM1408 3.0 19.1 1.0
C4C B:HEM1408 3.0 21.6 1.0
C1C B:HEM1408 3.0 20.8 1.0
C4B B:HEM1408 3.0 19.5 1.0
C1B B:HEM1408 3.0 17.5 1.0
C4D B:HEM1408 3.1 18.0 1.0
C4A B:HEM1408 3.1 16.1 1.0
C1A B:HEM1408 3.1 17.1 1.0
CHD B:HEM1408 3.4 21.4 1.0
CHC B:HEM1408 3.4 19.2 1.0
CHB B:HEM1408 3.4 16.1 1.0
CB B:CYS354 3.4 18.8 1.0
CHA B:HEM1408 3.4 17.8 1.0
CA B:CYS354 4.1 18.1 1.0
C3C B:HEM1408 4.3 22.4 1.0
C2D B:HEM1408 4.3 19.4 1.0
O B:ALA243 4.3 29.6 1.0
C2C B:HEM1408 4.3 20.7 1.0
C3B B:HEM1408 4.3 21.3 1.0
C2B B:HEM1408 4.3 19.6 1.0
C3D B:HEM1408 4.3 19.4 1.0
C3A B:HEM1408 4.3 17.1 1.0
C2A B:HEM1408 4.3 17.0 1.0
C1 B:PXI1409 4.5 32.1 1.0
N B:GLY356 4.7 17.8 1.0
C B:ALA243 4.8 30.9 1.0
CB B:ALA243 4.8 29.3 1.0
C B:CYS354 4.8 19.8 1.0
N B:ILE355 4.9 19.1 1.0

Reference:

D.H.Sherman, S.Li, L.V.Yermalitskaya, Y.Kim, J.A.Smith, M.R.Waterman, L.M.Podust. The Structural Basis For Substrate Anchoring, Active Site Selectivity, and Product Formation By P450 Pikc From Streptomyces Venezuelae. J.Biol.Chem. V. 281 26289 2006.
ISSN: ISSN 0021-9258
PubMed: 16825192
DOI: 10.1074/JBC.M605478200
Page generated: Sat Aug 3 20:05:08 2024

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