Iron in PDB 2ca0: Crystal Structure of Yc-17-Bound Cytochrome P450 Pikc ( CYP107L1)

The structure of Crystal Structure of Yc-17-Bound Cytochrome P450 Pikc ( CYP107L1), PDB code: 2ca0 was solved by L.I.Yermalitskaya, Y.Kim, D.H.Sherman, M.R.Waterman, L.M.Podust, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.41 / 2.85
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	61.088, 91.972, 68.901, 90.00, 89.92, 90.00
R / Rfree (%)	24 / 33.8

The binding sites of Iron atom in the Crystal Structure of Yc-17-Bound Cytochrome P450 Pikc ( CYP107L1) (pdb code 2ca0). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Yc-17-Bound Cytochrome P450 Pikc ( CYP107L1), PDB code: 2ca0:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Crystal Structure of Yc-17-Bound Cytochrome P450 Pikc ( CYP107L1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Yc-17-Bound Cytochrome P450 Pikc ( CYP107L1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1407 b:4.4 occ:1.00 FE A:HEM1407 0.0 4.4 1.0 NB A:HEM1407 1.9 4.1 1.0 NA A:HEM1407 2.0 5.0 1.0 ND A:HEM1407 2.0 6.2 1.0 NC A:HEM1407 2.0 5.7 1.0 SG A:CYS354 3.0 18.8 1.0 C4A A:HEM1407 3.0 4.8 1.0 C1B A:HEM1407 3.0 3.9 1.0 C4B A:HEM1407 3.0 4.8 1.0 C1D A:HEM1407 3.0 5.0 1.0 C1A A:HEM1407 3.1 4.1 1.0 C4D A:HEM1407 3.1 6.2 1.0 C1C A:HEM1407 3.1 4.8 1.0 C4C A:HEM1407 3.1 4.8 1.0 O A:ALA243 3.3 29.2 1.0 CHB A:HEM1407 3.4 3.8 1.0 CHD A:HEM1407 3.4 4.2 1.0 CHC A:HEM1407 3.4 4.8 1.0 CHA A:HEM1407 3.5 3.9 1.0 CB A:CYS354 3.6 15.4 1.0 C1 A:PXI1408 4.1 32.5 1.0 CA A:CYS354 4.1 12.9 1.0 C3A A:HEM1407 4.2 4.8 1.0 C3B A:HEM1407 4.2 4.4 1.0 C2B A:HEM1407 4.2 3.6 1.0 C2D A:HEM1407 4.3 6.9 1.0 C2A A:HEM1407 4.3 4.7 1.0 C3D A:HEM1407 4.3 7.3 1.0 C2C A:HEM1407 4.3 5.7 1.0 C3C A:HEM1407 4.4 4.2 1.0 C A:ALA243 4.5 28.1 1.0 N A:GLY356 4.8 12.5 1.0 N A:ILE355 4.8 10.5 1.0 C A:CYS354 4.8 11.3 1.0

Iron binding site 2 out of 2 in the Crystal Structure of Yc-17-Bound Cytochrome P450 Pikc ( CYP107L1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Yc-17-Bound Cytochrome P450 Pikc ( CYP107L1) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1407 b:9.4 occ:1.00 FE B:HEM1407 0.0 9.4 1.0 NC B:HEM1407 2.0 4.0 1.0 ND B:HEM1407 2.0 5.1 1.0 NB B:HEM1407 2.0 5.3 1.0 NA B:HEM1407 2.0 8.1 1.0 SG B:CYS354 2.8 9.0 1.0 C1C B:HEM1407 3.0 5.2 1.0 C4C B:HEM1407 3.0 3.4 1.0 C1D B:HEM1407 3.0 3.1 1.0 C4B B:HEM1407 3.1 6.4 1.0 C4D B:HEM1407 3.1 6.5 1.0 C1B B:HEM1407 3.1 5.8 1.0 C1A B:HEM1407 3.1 8.0 1.0 C4A B:HEM1407 3.1 8.6 1.0 CHC B:HEM1407 3.4 6.5 1.0 CHD B:HEM1407 3.4 3.1 1.0 CHA B:HEM1407 3.5 8.1 1.0 CHB B:HEM1407 3.5 8.3 1.0 CB B:CYS354 3.9 9.4 1.0 C3C B:HEM1407 4.3 5.0 1.0 C2C B:HEM1407 4.3 6.4 1.0 C2D B:HEM1407 4.3 3.9 1.0 CA B:CYS354 4.3 9.3 1.0 C1 B:PXI1408 4.3 32.6 1.0 C3D B:HEM1407 4.3 7.6 1.0 C3B B:HEM1407 4.3 5.0 1.0 C2B B:HEM1407 4.3 5.3 1.0 C2A B:HEM1407 4.4 8.9 1.0 C3A B:HEM1407 4.4 7.8 1.0 N B:GLY356 4.4 6.9 1.0 N B:ILE355 4.6 7.0 1.0 CA B:GLY356 4.7 10.2 1.0 CB B:ALA243 4.7 25.1 1.0 C B:CYS354 4.9 8.4 1.0 N B:GLY244 5.0 26.4 1.0

L.I.Yermalitskaya, Y.Kim, D.H.Sherman, M.R.Waterman, L.M.Podust. Crystal Structure of Yc-17-Bound Cytochrome P450 Pikc (CYP107L1) To Be Published.