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Iron in PDB 2ccy: Structure of Ferricytochrome C(Prime) From Rhodospirillum Molischianum at 1.67 Angstroms Resolution

Protein crystallography data

The structure of Structure of Ferricytochrome C(Prime) From Rhodospirillum Molischianum at 1.67 Angstroms Resolution, PDB code: 2ccy was solved by B.C.Finzel, P.C.Weber, K.D.Hardman, F.R.Salemme, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 1.67
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.580, 72.330, 75.440, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Ferricytochrome C(Prime) From Rhodospirillum Molischianum at 1.67 Angstroms Resolution (pdb code 2ccy). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Structure of Ferricytochrome C(Prime) From Rhodospirillum Molischianum at 1.67 Angstroms Resolution, PDB code: 2ccy:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 2ccy

Go back to Iron Binding Sites List in 2ccy
Iron binding site 1 out of 2 in the Structure of Ferricytochrome C(Prime) From Rhodospirillum Molischianum at 1.67 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Ferricytochrome C(Prime) From Rhodospirillum Molischianum at 1.67 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe129

b:22.6
occ:1.00
FE A:HEM129 0.0 22.6 1.0
NA A:HEM129 2.0 19.0 1.0
NC A:HEM129 2.0 19.6 1.0
NE2 A:HIS122 2.0 25.5 1.0
NB A:HEM129 2.0 17.9 1.0
ND A:HEM129 2.0 19.4 1.0
CD2 A:HIS122 3.0 28.9 1.0
C4D A:HEM129 3.0 19.1 1.0
C4B A:HEM129 3.0 16.9 1.0
C1B A:HEM129 3.0 18.3 1.0
C1C A:HEM129 3.0 18.2 1.0
C4C A:HEM129 3.0 17.7 1.0
C1D A:HEM129 3.0 19.8 1.0
C4A A:HEM129 3.1 19.6 1.0
CE1 A:HIS122 3.1 28.7 1.0
C1A A:HEM129 3.1 21.7 1.0
CHA A:HEM129 3.4 22.5 1.0
CHC A:HEM129 3.5 17.2 1.0
CHD A:HEM129 3.5 22.5 1.0
CHB A:HEM129 3.5 20.2 1.0
SD A:MET16 3.7 22.1 1.0
CG A:HIS122 4.1 26.9 1.0
ND1 A:HIS122 4.2 25.7 1.0
C3D A:HEM129 4.2 18.4 1.0
C3B A:HEM129 4.3 20.8 1.0
C2D A:HEM129 4.3 18.1 1.0
C2A A:HEM129 4.3 20.9 1.0
C2C A:HEM129 4.3 20.5 1.0
C3A A:HEM129 4.3 19.8 1.0
C2B A:HEM129 4.3 18.9 1.0
C3C A:HEM129 4.3 20.6 1.0
CG A:MET16 4.6 17.6 1.0
CH2 A:TRP86 4.7 19.4 1.0

Iron binding site 2 out of 2 in 2ccy

Go back to Iron Binding Sites List in 2ccy
Iron binding site 2 out of 2 in the Structure of Ferricytochrome C(Prime) From Rhodospirillum Molischianum at 1.67 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Ferricytochrome C(Prime) From Rhodospirillum Molischianum at 1.67 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe129

b:16.6
occ:1.00
FE B:HEM129 0.0 16.6 1.0
ND B:HEM129 2.0 16.1 1.0
NB B:HEM129 2.0 14.7 1.0
NE2 B:HIS122 2.0 22.2 1.0
NA B:HEM129 2.1 14.9 1.0
NC B:HEM129 2.1 12.0 1.0
CE1 B:HIS122 2.9 23.2 1.0
C4A B:HEM129 3.0 17.9 1.0
C1C B:HEM129 3.0 14.4 1.0
C4C B:HEM129 3.0 12.6 1.0
C1B B:HEM129 3.0 14.9 1.0
C1D B:HEM129 3.1 15.8 1.0
C1A B:HEM129 3.1 15.2 1.0
CD2 B:HIS122 3.1 23.5 1.0
C4B B:HEM129 3.1 15.8 1.0
C4D B:HEM129 3.1 15.3 1.0
CHB B:HEM129 3.4 18.2 1.0
CHD B:HEM129 3.5 13.7 1.0
CHA B:HEM129 3.5 12.4 1.0
CHC B:HEM129 3.5 14.8 1.0
SD B:MET16 3.7 19.1 1.0
ND1 B:HIS122 4.1 22.6 1.0
CG B:HIS122 4.2 21.5 1.0
C2B B:HEM129 4.2 14.4 1.0
C2C B:HEM129 4.2 12.6 1.0
C3C B:HEM129 4.2 12.6 1.0
C3D B:HEM129 4.2 15.8 1.0
C3B B:HEM129 4.2 14.7 1.0
C3A B:HEM129 4.2 15.2 1.0
C2D B:HEM129 4.2 15.2 1.0
C2A B:HEM129 4.3 17.6 1.0
CG B:MET16 4.5 11.7 1.0

Reference:

B.C.Finzel, P.C.Weber, K.D.Hardman, F.R.Salemme. Structure of Ferricytochrome C' From Rhodospirillum Molischianum at 1.67 A Resolution. J.Mol.Biol. V. 186 627 1985.
ISSN: ISSN 0022-2836
PubMed: 3005592
DOI: 10.1016/0022-2836(85)90135-4
Page generated: Sat Aug 3 20:11:30 2024

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