Iron in PDB 2cd8: Crystal Structure of Yc-17-Bound Cytochrome P450 Pikc (CYP107L1)

The structure of Crystal Structure of Yc-17-Bound Cytochrome P450 Pikc (CYP107L1), PDB code: 2cd8 was solved by L.I.Yermalitskaya, Y.Kim, D.H.Sherman, M.R.Waterman, L.M.Podust, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.84 / 1.7
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	58.401, 92.102, 67.574, 90.00, 89.99, 90.00
R / Rfree (%)	29 / 33.3

The binding sites of Iron atom in the Crystal Structure of Yc-17-Bound Cytochrome P450 Pikc (CYP107L1) (pdb code 2cd8). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Yc-17-Bound Cytochrome P450 Pikc (CYP107L1), PDB code: 2cd8:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Crystal Structure of Yc-17-Bound Cytochrome P450 Pikc (CYP107L1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Yc-17-Bound Cytochrome P450 Pikc (CYP107L1) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe419 b:15.9 occ:1.00 FE A:HEM419 0.0 15.9 1.0 NA A:HEM419 2.0 13.9 1.0 NC A:HEM419 2.0 14.8 1.0 NB A:HEM419 2.0 13.3 1.0 ND A:HEM419 2.0 14.0 1.0 SG A:CYS354 2.7 18.9 1.0 C4B A:HEM419 3.0 15.3 1.0 C1B A:HEM419 3.0 11.9 1.0 C1C A:HEM419 3.1 15.0 1.0 C4A A:HEM419 3.1 10.4 1.0 C4C A:HEM419 3.1 14.6 1.0 C1D A:HEM419 3.1 15.5 1.0 C4D A:HEM419 3.1 15.7 1.0 C1A A:HEM419 3.1 12.0 1.0 CB A:CYS354 3.4 16.3 1.0 CHC A:HEM419 3.4 16.9 1.0 CHB A:HEM419 3.4 13.7 1.0 CHD A:HEM419 3.5 14.2 1.0 CHA A:HEM419 3.5 14.8 1.0 CA A:CYS354 4.1 17.6 1.0 O A:ALA243 4.2 15.7 1.0 C3B A:HEM419 4.3 14.3 1.0 C2C A:HEM419 4.3 15.9 1.0 C3C A:HEM419 4.3 16.3 1.0 C3D A:HEM419 4.3 11.9 1.0 C2D A:HEM419 4.3 13.3 1.0 C2B A:HEM419 4.3 11.8 1.0 C3A A:HEM419 4.3 12.3 1.0 C2A A:HEM419 4.4 12.4 1.0 C1 A:PXI420 4.6 20.4 1.0 N A:GLY356 4.7 16.9 1.0 C A:CYS354 4.8 16.4 1.0 C A:ALA243 4.8 14.9 1.0 N A:ILE355 4.8 15.9 1.0 CB A:ALA243 4.9 17.3 1.0

Iron binding site 2 out of 2 in the Crystal Structure of Yc-17-Bound Cytochrome P450 Pikc (CYP107L1)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Yc-17-Bound Cytochrome P450 Pikc (CYP107L1) within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe419 b:16.7 occ:1.00 FE B:HEM419 0.0 16.7 1.0 ND B:HEM419 2.0 14.6 1.0 NC B:HEM419 2.0 16.5 1.0 NB B:HEM419 2.0 14.2 1.0 NA B:HEM419 2.0 14.8 1.0 SG B:CYS354 2.9 19.6 1.0 C1D B:HEM419 3.0 16.4 1.0 C1C B:HEM419 3.0 16.3 1.0 C4D B:HEM419 3.0 16.2 1.0 C4C B:HEM419 3.1 15.1 1.0 C4A B:HEM419 3.1 15.0 1.0 C1B B:HEM419 3.1 17.8 1.0 C4B B:HEM419 3.1 18.2 1.0 C1A B:HEM419 3.1 14.4 1.0 CHC B:HEM419 3.4 18.7 1.0 CHD B:HEM419 3.4 15.6 1.0 CHA B:HEM419 3.4 13.1 1.0 CHB B:HEM419 3.5 14.3 1.0 CB B:CYS354 3.6 18.7 1.0 CA B:CYS354 4.1 17.3 1.0 O B:ALA243 4.2 22.9 1.0 C2D B:HEM419 4.2 14.6 1.0 C3D B:HEM419 4.3 14.2 1.0 C2C B:HEM419 4.3 17.2 1.0 C3A B:HEM419 4.3 14.2 1.0 C3C B:HEM419 4.3 16.7 1.0 C2B B:HEM419 4.3 15.1 1.0 C3B B:HEM419 4.3 15.1 1.0 C2A B:HEM419 4.3 13.0 1.0 C1 B:PXI420 4.5 21.4 1.0 C B:ALA243 4.7 22.5 1.0 CB B:ALA243 4.7 21.6 1.0 N B:GLY356 4.7 19.5 1.0 N B:ILE355 4.8 17.5 1.0 C B:CYS354 4.8 17.5 1.0

D.H.Sherman, S.Li, L.V.Yermalitskaya, Y.Kim, J.A.Smith, M.R.Waterman, L.M.Podust. The Structural Basis For Substrate Anchoring, Active Site Selectivity, and Product Formation By P450 Pikc From Streptomyces Venezuelae. J.Biol.Chem. V. 281 26289 2006.
ISSN: ISSN 0021-9258
PubMed: 16825192
DOI: 10.1074/JBC.M605478200