Iron in PDB 2cvc: Crystal Structure of High-Molecular Weight Cytochrome C From Desulfovibrio Vulgaris (Hildenborough)
Protein crystallography data
The structure of Crystal Structure of High-Molecular Weight Cytochrome C From Desulfovibrio Vulgaris (Hildenborough), PDB code: 2cvc
was solved by
K.Suto,
M.Sato,
N.Shibata,
M.Kitamura,
Y.Morimoto,
Y.Takayama,
K.Ozawa,
H.Akutsu,
Y.Higuchi,
N.Yasuoka,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.35 /
2.00
|
Space group
|
P 62
|
Cell size a, b, c (Å), α, β, γ (°)
|
108.670,
108.670,
103.890,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
20 /
24.3
|
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Iron atom in the Crystal Structure of High-Molecular Weight Cytochrome C From Desulfovibrio Vulgaris (Hildenborough)
(pdb code 2cvc). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 16 binding sites of Iron where determined in the
Crystal Structure of High-Molecular Weight Cytochrome C From Desulfovibrio Vulgaris (Hildenborough), PDB code: 2cvc:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 16 in 2cvc
Go back to
Iron Binding Sites List in 2cvc
Iron binding site 1 out
of 16 in the Crystal Structure of High-Molecular Weight Cytochrome C From Desulfovibrio Vulgaris (Hildenborough)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of High-Molecular Weight Cytochrome C From Desulfovibrio Vulgaris (Hildenborough) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1001
b:28.1
occ:1.00
|
FE
|
A:HEC1001
|
0.0
|
28.1
|
1.0
|
NE2
|
A:HIS84
|
2.0
|
31.4
|
1.0
|
NE2
|
A:HIS66
|
2.0
|
33.5
|
1.0
|
NC
|
A:HEC1001
|
2.1
|
26.9
|
1.0
|
NA
|
A:HEC1001
|
2.1
|
28.1
|
1.0
|
NB
|
A:HEC1001
|
2.1
|
35.6
|
1.0
|
ND
|
A:HEC1001
|
2.1
|
30.0
|
1.0
|
CE1
|
A:HIS84
|
2.9
|
28.5
|
1.0
|
CD2
|
A:HIS84
|
3.0
|
34.5
|
1.0
|
CD2
|
A:HIS66
|
3.0
|
26.1
|
1.0
|
CE1
|
A:HIS66
|
3.0
|
28.7
|
1.0
|
C1A
|
A:HEC1001
|
3.0
|
23.4
|
1.0
|
C4C
|
A:HEC1001
|
3.1
|
31.0
|
1.0
|
C4A
|
A:HEC1001
|
3.1
|
29.5
|
1.0
|
C1C
|
A:HEC1001
|
3.1
|
33.2
|
1.0
|
C4B
|
A:HEC1001
|
3.1
|
31.0
|
1.0
|
C1B
|
A:HEC1001
|
3.1
|
38.1
|
1.0
|
C1D
|
A:HEC1001
|
3.1
|
32.4
|
1.0
|
C4D
|
A:HEC1001
|
3.1
|
25.1
|
1.0
|
CHD
|
A:HEC1001
|
3.4
|
30.1
|
1.0
|
CHA
|
A:HEC1001
|
3.4
|
20.9
|
1.0
|
CHB
|
A:HEC1001
|
3.4
|
26.2
|
1.0
|
CHC
|
A:HEC1001
|
3.4
|
28.8
|
1.0
|
ND1
|
A:HIS84
|
4.1
|
26.5
|
1.0
|
CG
|
A:HIS84
|
4.1
|
35.0
|
1.0
|
ND1
|
A:HIS66
|
4.1
|
25.8
|
1.0
|
CG
|
A:HIS66
|
4.2
|
19.2
|
1.0
|
C2A
|
A:HEC1001
|
4.2
|
29.3
|
1.0
|
C3A
|
A:HEC1001
|
4.3
|
31.7
|
1.0
|
C3C
|
A:HEC1001
|
4.3
|
26.6
|
1.0
|
C2C
|
A:HEC1001
|
4.3
|
27.6
|
1.0
|
C3B
|
A:HEC1001
|
4.3
|
29.6
|
1.0
|
C2B
|
A:HEC1001
|
4.3
|
28.2
|
1.0
|
C2D
|
A:HEC1001
|
4.3
|
28.0
|
1.0
|
C3D
|
A:HEC1001
|
4.3
|
27.7
|
1.0
|
CBB
|
A:HEC1007
|
5.0
|
41.5
|
1.0
|
|
Iron binding site 2 out
of 16 in 2cvc
Go back to
Iron Binding Sites List in 2cvc
Iron binding site 2 out
of 16 in the Crystal Structure of High-Molecular Weight Cytochrome C From Desulfovibrio Vulgaris (Hildenborough)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of High-Molecular Weight Cytochrome C From Desulfovibrio Vulgaris (Hildenborough) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1002
b:27.7
occ:1.00
|
FE
|
A:HEC1002
|
0.0
|
27.7
|
1.0
|
NE2
|
A:HIS118
|
2.0
|
29.1
|
1.0
|
NE2
|
A:HIS69
|
2.0
|
26.7
|
1.0
|
NC
|
A:HEC1002
|
2.1
|
23.5
|
1.0
|
ND
|
A:HEC1002
|
2.1
|
29.9
|
1.0
|
NA
|
A:HEC1002
|
2.1
|
28.4
|
1.0
|
NB
|
A:HEC1002
|
2.1
|
28.2
|
1.0
|
CE1
|
A:HIS118
|
2.9
|
28.8
|
1.0
|
CD2
|
A:HIS69
|
3.0
|
29.0
|
1.0
|
CE1
|
A:HIS69
|
3.0
|
24.9
|
1.0
|
C1C
|
A:HEC1002
|
3.0
|
30.1
|
1.0
|
C4C
|
A:HEC1002
|
3.0
|
25.0
|
1.0
|
C1D
|
A:HEC1002
|
3.1
|
34.9
|
1.0
|
C4D
|
A:HEC1002
|
3.1
|
31.0
|
1.0
|
C1A
|
A:HEC1002
|
3.1
|
29.0
|
1.0
|
CD2
|
A:HIS118
|
3.1
|
27.2
|
1.0
|
C4A
|
A:HEC1002
|
3.1
|
29.9
|
1.0
|
C4B
|
A:HEC1002
|
3.1
|
33.0
|
1.0
|
C1B
|
A:HEC1002
|
3.1
|
27.2
|
1.0
|
CHD
|
A:HEC1002
|
3.4
|
24.9
|
1.0
|
CHA
|
A:HEC1002
|
3.4
|
27.7
|
1.0
|
CHC
|
A:HEC1002
|
3.4
|
32.5
|
1.0
|
CHB
|
A:HEC1002
|
3.4
|
25.8
|
1.0
|
ND1
|
A:HIS118
|
4.0
|
31.7
|
1.0
|
ND1
|
A:HIS69
|
4.1
|
27.6
|
1.0
|
CG
|
A:HIS69
|
4.1
|
24.5
|
1.0
|
CG
|
A:HIS118
|
4.2
|
32.6
|
1.0
|
C2C
|
A:HEC1002
|
4.2
|
25.3
|
1.0
|
C2D
|
A:HEC1002
|
4.3
|
29.8
|
1.0
|
C3C
|
A:HEC1002
|
4.3
|
24.9
|
1.0
|
C3D
|
A:HEC1002
|
4.3
|
31.7
|
1.0
|
C2A
|
A:HEC1002
|
4.3
|
34.1
|
1.0
|
C3A
|
A:HEC1002
|
4.3
|
22.6
|
1.0
|
C3B
|
A:HEC1002
|
4.3
|
22.9
|
1.0
|
C2B
|
A:HEC1002
|
4.3
|
34.2
|
1.0
|
CE1
|
A:PHE64
|
4.8
|
30.2
|
1.0
|
CA
|
A:GLY129
|
4.9
|
30.4
|
1.0
|
|
Iron binding site 3 out
of 16 in 2cvc
Go back to
Iron Binding Sites List in 2cvc
Iron binding site 3 out
of 16 in the Crystal Structure of High-Molecular Weight Cytochrome C From Desulfovibrio Vulgaris (Hildenborough)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of High-Molecular Weight Cytochrome C From Desulfovibrio Vulgaris (Hildenborough) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1003
b:28.6
occ:1.00
|
FE
|
A:HEC1003
|
0.0
|
28.6
|
1.0
|
NE2
|
A:HIS111
|
1.9
|
27.2
|
1.0
|
NE2
|
A:HIS139
|
2.0
|
23.6
|
1.0
|
NA
|
A:HEC1003
|
2.1
|
30.5
|
1.0
|
ND
|
A:HEC1003
|
2.1
|
31.4
|
1.0
|
NC
|
A:HEC1003
|
2.1
|
29.6
|
1.0
|
NB
|
A:HEC1003
|
2.1
|
36.5
|
1.0
|
CE1
|
A:HIS111
|
2.9
|
39.2
|
1.0
|
CE1
|
A:HIS139
|
2.9
|
28.4
|
1.0
|
CD2
|
A:HIS111
|
3.0
|
30.9
|
1.0
|
CD2
|
A:HIS139
|
3.0
|
26.6
|
1.0
|
C1A
|
A:HEC1003
|
3.0
|
37.6
|
1.0
|
C4A
|
A:HEC1003
|
3.1
|
34.1
|
1.0
|
C4D
|
A:HEC1003
|
3.1
|
30.3
|
1.0
|
C1D
|
A:HEC1003
|
3.1
|
28.3
|
1.0
|
C1B
|
A:HEC1003
|
3.1
|
38.8
|
1.0
|
C1C
|
A:HEC1003
|
3.1
|
31.7
|
1.0
|
C4C
|
A:HEC1003
|
3.1
|
34.0
|
1.0
|
C4B
|
A:HEC1003
|
3.1
|
30.0
|
1.0
|
CHA
|
A:HEC1003
|
3.4
|
29.3
|
1.0
|
CHB
|
A:HEC1003
|
3.4
|
26.5
|
1.0
|
CHD
|
A:HEC1003
|
3.4
|
25.6
|
1.0
|
CHC
|
A:HEC1003
|
3.4
|
27.2
|
1.0
|
ND1
|
A:HIS111
|
4.0
|
33.6
|
1.0
|
ND1
|
A:HIS139
|
4.0
|
27.0
|
1.0
|
CG
|
A:HIS111
|
4.1
|
28.5
|
1.0
|
CG
|
A:HIS139
|
4.1
|
22.6
|
1.0
|
C2A
|
A:HEC1003
|
4.2
|
42.0
|
1.0
|
C3A
|
A:HEC1003
|
4.2
|
35.8
|
1.0
|
C3D
|
A:HEC1003
|
4.2
|
37.8
|
1.0
|
C2D
|
A:HEC1003
|
4.3
|
38.8
|
1.0
|
C2B
|
A:HEC1003
|
4.3
|
26.9
|
1.0
|
C2C
|
A:HEC1003
|
4.3
|
33.1
|
1.0
|
C3C
|
A:HEC1003
|
4.3
|
37.0
|
1.0
|
C3B
|
A:HEC1003
|
4.3
|
32.4
|
1.0
|
|
Iron binding site 4 out
of 16 in 2cvc
Go back to
Iron Binding Sites List in 2cvc
Iron binding site 4 out
of 16 in the Crystal Structure of High-Molecular Weight Cytochrome C From Desulfovibrio Vulgaris (Hildenborough)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of High-Molecular Weight Cytochrome C From Desulfovibrio Vulgaris (Hildenborough) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1004
b:29.5
occ:1.00
|
FE
|
A:HEC1004
|
0.0
|
29.5
|
1.0
|
NE2
|
A:HIS182
|
2.0
|
28.5
|
1.0
|
NE2
|
A:HIS159
|
2.0
|
28.9
|
1.0
|
NA
|
A:HEC1004
|
2.1
|
32.0
|
1.0
|
NC
|
A:HEC1004
|
2.1
|
28.7
|
1.0
|
NB
|
A:HEC1004
|
2.1
|
26.6
|
1.0
|
ND
|
A:HEC1004
|
2.1
|
32.4
|
1.0
|
CE1
|
A:HIS182
|
2.9
|
35.7
|
1.0
|
CE1
|
A:HIS159
|
2.9
|
26.0
|
1.0
|
CD2
|
A:HIS159
|
3.0
|
28.6
|
1.0
|
CD2
|
A:HIS182
|
3.0
|
39.0
|
1.0
|
C1A
|
A:HEC1004
|
3.0
|
29.4
|
1.0
|
C1C
|
A:HEC1004
|
3.1
|
35.5
|
1.0
|
C4D
|
A:HEC1004
|
3.1
|
29.7
|
1.0
|
C4A
|
A:HEC1004
|
3.1
|
33.5
|
1.0
|
C4B
|
A:HEC1004
|
3.1
|
25.8
|
1.0
|
C4C
|
A:HEC1004
|
3.1
|
34.0
|
1.0
|
C1D
|
A:HEC1004
|
3.1
|
31.0
|
1.0
|
C1B
|
A:HEC1004
|
3.1
|
35.0
|
1.0
|
CHA
|
A:HEC1004
|
3.3
|
31.0
|
1.0
|
CHC
|
A:HEC1004
|
3.4
|
28.4
|
1.0
|
CHD
|
A:HEC1004
|
3.4
|
25.6
|
1.0
|
CHB
|
A:HEC1004
|
3.4
|
30.0
|
1.0
|
ND1
|
A:HIS159
|
4.0
|
29.3
|
1.0
|
ND1
|
A:HIS182
|
4.0
|
28.2
|
1.0
|
CG
|
A:HIS159
|
4.1
|
35.5
|
1.0
|
CG
|
A:HIS182
|
4.1
|
29.3
|
1.0
|
C2A
|
A:HEC1004
|
4.2
|
39.8
|
1.0
|
C2C
|
A:HEC1004
|
4.3
|
39.9
|
1.0
|
C3A
|
A:HEC1004
|
4.3
|
33.3
|
1.0
|
C3C
|
A:HEC1004
|
4.3
|
34.8
|
1.0
|
C3D
|
A:HEC1004
|
4.3
|
34.4
|
1.0
|
C2B
|
A:HEC1004
|
4.3
|
26.9
|
1.0
|
C2D
|
A:HEC1004
|
4.3
|
32.0
|
1.0
|
C3B
|
A:HEC1004
|
4.3
|
25.4
|
1.0
|
|
Iron binding site 5 out
of 16 in 2cvc
Go back to
Iron Binding Sites List in 2cvc
Iron binding site 5 out
of 16 in the Crystal Structure of High-Molecular Weight Cytochrome C From Desulfovibrio Vulgaris (Hildenborough)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of High-Molecular Weight Cytochrome C From Desulfovibrio Vulgaris (Hildenborough) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1005
b:29.3
occ:1.00
|
FE
|
A:HEC1005
|
0.0
|
29.3
|
1.0
|
NE2
|
A:HIS183
|
2.0
|
34.0
|
1.0
|
NE2
|
A:HIS206
|
2.0
|
32.0
|
1.0
|
NA
|
A:HEC1005
|
2.1
|
23.9
|
1.0
|
NB
|
A:HEC1005
|
2.1
|
27.0
|
1.0
|
NC
|
A:HEC1005
|
2.1
|
32.9
|
1.0
|
ND
|
A:HEC1005
|
2.1
|
31.6
|
1.0
|
CE1
|
A:HIS183
|
2.9
|
45.5
|
1.0
|
CE1
|
A:HIS206
|
2.9
|
32.9
|
1.0
|
C1A
|
A:HEC1005
|
3.0
|
30.8
|
1.0
|
CD2
|
A:HIS183
|
3.1
|
33.5
|
1.0
|
C4B
|
A:HEC1005
|
3.1
|
22.3
|
1.0
|
C4D
|
A:HEC1005
|
3.1
|
36.1
|
1.0
|
C1C
|
A:HEC1005
|
3.1
|
28.9
|
1.0
|
C1B
|
A:HEC1005
|
3.1
|
31.6
|
1.0
|
C4A
|
A:HEC1005
|
3.1
|
29.8
|
1.0
|
C4C
|
A:HEC1005
|
3.1
|
32.4
|
1.0
|
CD2
|
A:HIS206
|
3.1
|
32.1
|
1.0
|
C1D
|
A:HEC1005
|
3.1
|
28.9
|
1.0
|
CHA
|
A:HEC1005
|
3.4
|
34.1
|
1.0
|
CHC
|
A:HEC1005
|
3.4
|
22.8
|
1.0
|
CHD
|
A:HEC1005
|
3.4
|
25.7
|
1.0
|
CHB
|
A:HEC1005
|
3.4
|
30.0
|
1.0
|
ND1
|
A:HIS183
|
4.0
|
46.2
|
1.0
|
ND1
|
A:HIS206
|
4.1
|
30.2
|
1.0
|
CG
|
A:HIS183
|
4.2
|
36.3
|
1.0
|
CG
|
A:HIS206
|
4.2
|
34.5
|
1.0
|
C2A
|
A:HEC1005
|
4.2
|
30.1
|
1.0
|
C3B
|
A:HEC1005
|
4.3
|
24.8
|
1.0
|
C2C
|
A:HEC1005
|
4.3
|
30.6
|
1.0
|
C3A
|
A:HEC1005
|
4.3
|
30.8
|
1.0
|
C2B
|
A:HEC1005
|
4.3
|
26.7
|
1.0
|
C3C
|
A:HEC1005
|
4.3
|
33.2
|
1.0
|
C3D
|
A:HEC1005
|
4.3
|
35.8
|
1.0
|
C2D
|
A:HEC1005
|
4.3
|
30.3
|
1.0
|
|
Iron binding site 6 out
of 16 in 2cvc
Go back to
Iron Binding Sites List in 2cvc
Iron binding site 6 out
of 16 in the Crystal Structure of High-Molecular Weight Cytochrome C From Desulfovibrio Vulgaris (Hildenborough)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of High-Molecular Weight Cytochrome C From Desulfovibrio Vulgaris (Hildenborough) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1006
b:29.3
occ:1.00
|
FE
|
A:HEC1006
|
0.0
|
29.3
|
1.0
|
NE2
|
A:HIS229
|
2.0
|
30.8
|
1.0
|
NE2
|
A:HIS162
|
2.0
|
28.1
|
1.0
|
NC
|
A:HEC1006
|
2.1
|
24.4
|
1.0
|
NA
|
A:HEC1006
|
2.1
|
28.6
|
1.0
|
ND
|
A:HEC1006
|
2.1
|
30.4
|
1.0
|
NB
|
A:HEC1006
|
2.1
|
26.2
|
1.0
|
CE1
|
A:HIS229
|
2.9
|
28.0
|
1.0
|
CD2
|
A:HIS162
|
2.9
|
24.1
|
1.0
|
CD2
|
A:HIS229
|
3.0
|
24.0
|
1.0
|
C4A
|
A:HEC1006
|
3.0
|
35.4
|
1.0
|
CE1
|
A:HIS162
|
3.0
|
28.1
|
1.0
|
C1D
|
A:HEC1006
|
3.0
|
31.9
|
1.0
|
C4C
|
A:HEC1006
|
3.1
|
26.2
|
1.0
|
C1C
|
A:HEC1006
|
3.1
|
33.2
|
1.0
|
C1B
|
A:HEC1006
|
3.1
|
31.2
|
1.0
|
C4D
|
A:HEC1006
|
3.1
|
35.4
|
1.0
|
C1A
|
A:HEC1006
|
3.1
|
30.4
|
1.0
|
C4B
|
A:HEC1006
|
3.1
|
25.4
|
1.0
|
CHD
|
A:HEC1006
|
3.3
|
25.6
|
1.0
|
CHB
|
A:HEC1006
|
3.3
|
30.3
|
1.0
|
CHC
|
A:HEC1006
|
3.4
|
28.4
|
1.0
|
CHA
|
A:HEC1006
|
3.4
|
30.0
|
1.0
|
ND1
|
A:HIS229
|
4.0
|
28.5
|
1.0
|
CG
|
A:HIS162
|
4.1
|
33.5
|
1.0
|
ND1
|
A:HIS162
|
4.1
|
25.6
|
1.0
|
CG
|
A:HIS229
|
4.1
|
37.0
|
1.0
|
C3A
|
A:HEC1006
|
4.2
|
34.2
|
1.0
|
C2D
|
A:HEC1006
|
4.3
|
29.3
|
1.0
|
C2C
|
A:HEC1006
|
4.3
|
30.7
|
1.0
|
C3D
|
A:HEC1006
|
4.3
|
30.3
|
1.0
|
C3C
|
A:HEC1006
|
4.3
|
29.1
|
1.0
|
C2A
|
A:HEC1006
|
4.3
|
29.4
|
1.0
|
C2B
|
A:HEC1006
|
4.3
|
28.6
|
1.0
|
C3B
|
A:HEC1006
|
4.3
|
23.1
|
1.0
|
CA
|
A:GLY240
|
4.5
|
31.0
|
1.0
|
CZ
|
A:PHE154
|
4.6
|
27.0
|
1.0
|
N
|
A:GLY240
|
4.9
|
35.5
|
1.0
|
|
Iron binding site 7 out
of 16 in 2cvc
Go back to
Iron Binding Sites List in 2cvc
Iron binding site 7 out
of 16 in the Crystal Structure of High-Molecular Weight Cytochrome C From Desulfovibrio Vulgaris (Hildenborough)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of High-Molecular Weight Cytochrome C From Desulfovibrio Vulgaris (Hildenborough) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1007
b:29.3
occ:1.00
|
FE
|
A:HEC1007
|
0.0
|
29.3
|
1.0
|
NE2
|
A:HIS248
|
2.0
|
27.9
|
1.0
|
NE2
|
A:HIS222
|
2.0
|
35.9
|
1.0
|
NB
|
A:HEC1007
|
2.1
|
25.5
|
1.0
|
NA
|
A:HEC1007
|
2.1
|
27.3
|
1.0
|
NC
|
A:HEC1007
|
2.1
|
30.2
|
1.0
|
ND
|
A:HEC1007
|
2.1
|
29.9
|
1.0
|
CE1
|
A:HIS248
|
2.9
|
29.2
|
1.0
|
CD2
|
A:HIS222
|
3.0
|
29.0
|
1.0
|
CE1
|
A:HIS222
|
3.0
|
28.1
|
1.0
|
C1B
|
A:HEC1007
|
3.0
|
31.5
|
1.0
|
CD2
|
A:HIS248
|
3.0
|
33.7
|
1.0
|
C4B
|
A:HEC1007
|
3.0
|
25.8
|
1.0
|
C4A
|
A:HEC1007
|
3.0
|
32.6
|
1.0
|
C1C
|
A:HEC1007
|
3.1
|
31.4
|
1.0
|
C1D
|
A:HEC1007
|
3.1
|
30.6
|
1.0
|
C1A
|
A:HEC1007
|
3.1
|
28.2
|
1.0
|
C4C
|
A:HEC1007
|
3.1
|
29.9
|
1.0
|
C4D
|
A:HEC1007
|
3.1
|
29.1
|
1.0
|
CHB
|
A:HEC1007
|
3.3
|
30.9
|
1.0
|
CHC
|
A:HEC1007
|
3.4
|
25.3
|
1.0
|
CHD
|
A:HEC1007
|
3.4
|
24.1
|
1.0
|
CHA
|
A:HEC1007
|
3.4
|
24.8
|
1.0
|
ND1
|
A:HIS248
|
4.0
|
28.4
|
1.0
|
ND1
|
A:HIS222
|
4.1
|
25.0
|
1.0
|
CG
|
A:HIS222
|
4.1
|
33.4
|
1.0
|
CG
|
A:HIS248
|
4.1
|
27.6
|
1.0
|
C2B
|
A:HEC1007
|
4.2
|
20.2
|
1.0
|
C3B
|
A:HEC1007
|
4.2
|
29.8
|
1.0
|
C3A
|
A:HEC1007
|
4.2
|
31.4
|
1.0
|
C2A
|
A:HEC1007
|
4.3
|
37.5
|
1.0
|
C2D
|
A:HEC1007
|
4.3
|
32.0
|
1.0
|
C2C
|
A:HEC1007
|
4.3
|
24.0
|
1.0
|
C3D
|
A:HEC1007
|
4.3
|
30.0
|
1.0
|
C3C
|
A:HEC1007
|
4.3
|
32.1
|
1.0
|
NE1
|
A:TRP149
|
4.7
|
35.5
|
1.0
|
|
Iron binding site 8 out
of 16 in 2cvc
Go back to
Iron Binding Sites List in 2cvc
Iron binding site 8 out
of 16 in the Crystal Structure of High-Molecular Weight Cytochrome C From Desulfovibrio Vulgaris (Hildenborough)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of High-Molecular Weight Cytochrome C From Desulfovibrio Vulgaris (Hildenborough) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1008
b:30.9
occ:1.00
|
FE
|
A:HEC1008
|
0.0
|
30.9
|
1.0
|
NE2
|
A:HIS312
|
2.0
|
36.0
|
1.0
|
NE2
|
A:HIS298
|
2.0
|
33.7
|
1.0
|
NA
|
A:HEC1008
|
2.1
|
29.4
|
1.0
|
NC
|
A:HEC1008
|
2.1
|
26.6
|
1.0
|
NB
|
A:HEC1008
|
2.1
|
26.1
|
1.0
|
ND
|
A:HEC1008
|
2.1
|
31.6
|
1.0
|
CE1
|
A:HIS312
|
2.9
|
32.8
|
1.0
|
CE1
|
A:HIS298
|
3.0
|
28.7
|
1.0
|
CD2
|
A:HIS298
|
3.0
|
30.9
|
1.0
|
C4A
|
A:HEC1008
|
3.0
|
37.9
|
1.0
|
CD2
|
A:HIS312
|
3.0
|
26.6
|
1.0
|
C1B
|
A:HEC1008
|
3.0
|
25.5
|
1.0
|
C4C
|
A:HEC1008
|
3.1
|
29.7
|
1.0
|
C1D
|
A:HEC1008
|
3.1
|
29.7
|
1.0
|
C1C
|
A:HEC1008
|
3.1
|
33.6
|
1.0
|
C1A
|
A:HEC1008
|
3.1
|
34.8
|
1.0
|
C4D
|
A:HEC1008
|
3.1
|
26.3
|
1.0
|
C4B
|
A:HEC1008
|
3.1
|
27.1
|
1.0
|
CHB
|
A:HEC1008
|
3.3
|
21.8
|
1.0
|
CHD
|
A:HEC1008
|
3.4
|
25.4
|
1.0
|
CHC
|
A:HEC1008
|
3.4
|
26.6
|
1.0
|
CHA
|
A:HEC1008
|
3.4
|
26.9
|
1.0
|
ND1
|
A:HIS312
|
4.0
|
25.9
|
1.0
|
ND1
|
A:HIS298
|
4.1
|
34.1
|
1.0
|
CG
|
A:HIS312
|
4.1
|
27.1
|
1.0
|
CG
|
A:HIS298
|
4.1
|
41.4
|
1.0
|
C3A
|
A:HEC1008
|
4.2
|
39.7
|
1.0
|
C2B
|
A:HEC1008
|
4.2
|
26.1
|
1.0
|
C2A
|
A:HEC1008
|
4.3
|
33.8
|
1.0
|
C2D
|
A:HEC1008
|
4.3
|
35.2
|
1.0
|
C3C
|
A:HEC1008
|
4.3
|
28.4
|
1.0
|
C3B
|
A:HEC1008
|
4.3
|
25.6
|
1.0
|
C3D
|
A:HEC1008
|
4.3
|
27.2
|
1.0
|
C2C
|
A:HEC1008
|
4.3
|
23.6
|
1.0
|
|
Iron binding site 9 out
of 16 in 2cvc
Go back to
Iron Binding Sites List in 2cvc
Iron binding site 9 out
of 16 in the Crystal Structure of High-Molecular Weight Cytochrome C From Desulfovibrio Vulgaris (Hildenborough)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Crystal Structure of High-Molecular Weight Cytochrome C From Desulfovibrio Vulgaris (Hildenborough) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1009
b:29.5
occ:1.00
|
FE
|
A:HEC1009
|
0.0
|
29.5
|
1.0
|
NE2
|
A:HIS313
|
2.0
|
31.3
|
1.0
|
NE2
|
A:HIS323
|
2.0
|
28.7
|
1.0
|
NC
|
A:HEC1009
|
2.1
|
28.5
|
1.0
|
ND
|
A:HEC1009
|
2.1
|
32.0
|
1.0
|
NA
|
A:HEC1009
|
2.1
|
35.8
|
1.0
|
NB
|
A:HEC1009
|
2.1
|
36.2
|
1.0
|
CE1
|
A:HIS313
|
2.9
|
31.3
|
1.0
|
CD2
|
A:HIS323
|
3.0
|
34.5
|
1.0
|
CE1
|
A:HIS323
|
3.0
|
43.1
|
1.0
|
C1C
|
A:HEC1009
|
3.1
|
35.2
|
1.0
|
CD2
|
A:HIS313
|
3.1
|
29.6
|
1.0
|
C4D
|
A:HEC1009
|
3.1
|
44.1
|
1.0
|
C1D
|
A:HEC1009
|
3.1
|
37.2
|
1.0
|
C4C
|
A:HEC1009
|
3.1
|
35.0
|
1.0
|
C1A
|
A:HEC1009
|
3.1
|
36.6
|
1.0
|
C4A
|
A:HEC1009
|
3.1
|
39.4
|
1.0
|
C4B
|
A:HEC1009
|
3.1
|
40.5
|
1.0
|
C1B
|
A:HEC1009
|
3.1
|
29.5
|
1.0
|
CHC
|
A:HEC1009
|
3.4
|
31.0
|
1.0
|
CHA
|
A:HEC1009
|
3.4
|
30.7
|
1.0
|
CHD
|
A:HEC1009
|
3.4
|
30.1
|
1.0
|
CHB
|
A:HEC1009
|
3.4
|
26.4
|
1.0
|
ND1
|
A:HIS313
|
4.0
|
29.1
|
1.0
|
ND1
|
A:HIS323
|
4.1
|
29.1
|
1.0
|
CG
|
A:HIS323
|
4.1
|
32.0
|
1.0
|
CG
|
A:HIS313
|
4.1
|
33.1
|
1.0
|
C2D
|
A:HEC1009
|
4.3
|
30.2
|
1.0
|
C3D
|
A:HEC1009
|
4.3
|
34.0
|
1.0
|
C3C
|
A:HEC1009
|
4.3
|
23.8
|
1.0
|
C2C
|
A:HEC1009
|
4.3
|
33.2
|
1.0
|
C3A
|
A:HEC1009
|
4.3
|
31.1
|
1.0
|
C2A
|
A:HEC1009
|
4.3
|
39.4
|
1.0
|
C2B
|
A:HEC1009
|
4.3
|
27.0
|
1.0
|
C3B
|
A:HEC1009
|
4.3
|
36.1
|
1.0
|
NH2
|
A:ARG347
|
4.8
|
38.3
|
1.0
|
|
Iron binding site 10 out
of 16 in 2cvc
Go back to
Iron Binding Sites List in 2cvc
Iron binding site 10 out
of 16 in the Crystal Structure of High-Molecular Weight Cytochrome C From Desulfovibrio Vulgaris (Hildenborough)
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Crystal Structure of High-Molecular Weight Cytochrome C From Desulfovibrio Vulgaris (Hildenborough) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1010
b:28.9
occ:1.00
|
FE
|
A:HEC1010
|
0.0
|
28.9
|
1.0
|
NE2
|
A:HIS301
|
2.0
|
35.8
|
1.0
|
NE2
|
A:HIS353
|
2.0
|
39.3
|
1.0
|
ND
|
A:HEC1010
|
2.1
|
31.4
|
1.0
|
NB
|
A:HEC1010
|
2.1
|
27.1
|
1.0
|
NA
|
A:HEC1010
|
2.1
|
24.6
|
1.0
|
NC
|
A:HEC1010
|
2.2
|
23.8
|
1.0
|
CE1
|
A:HIS301
|
2.9
|
32.6
|
1.0
|
CE1
|
A:HIS353
|
3.0
|
32.5
|
1.0
|
C4D
|
A:HEC1010
|
3.0
|
45.0
|
1.0
|
C1D
|
A:HEC1010
|
3.0
|
37.1
|
1.0
|
CD2
|
A:HIS301
|
3.0
|
34.1
|
1.0
|
C1B
|
A:HEC1010
|
3.0
|
35.5
|
1.0
|
C1A
|
A:HEC1010
|
3.1
|
27.6
|
1.0
|
CD2
|
A:HIS353
|
3.1
|
25.6
|
1.0
|
C4B
|
A:HEC1010
|
3.1
|
34.8
|
1.0
|
C4A
|
A:HEC1010
|
3.1
|
32.4
|
1.0
|
C1C
|
A:HEC1010
|
3.1
|
18.8
|
1.0
|
C4C
|
A:HEC1010
|
3.1
|
20.6
|
1.0
|
CHA
|
A:HEC1010
|
3.4
|
25.2
|
1.0
|
CHD
|
A:HEC1010
|
3.4
|
28.3
|
1.0
|
CHB
|
A:HEC1010
|
3.4
|
22.4
|
1.0
|
CHC
|
A:HEC1010
|
3.4
|
27.9
|
1.0
|
ND1
|
A:HIS301
|
4.1
|
36.9
|
1.0
|
ND1
|
A:HIS353
|
4.1
|
30.5
|
1.0
|
C3D
|
A:HEC1010
|
4.1
|
47.3
|
1.0
|
CG
|
A:HIS301
|
4.1
|
33.5
|
1.0
|
CG
|
A:HIS353
|
4.2
|
29.2
|
1.0
|
C2D
|
A:HEC1010
|
4.2
|
42.3
|
1.0
|
C2B
|
A:HEC1010
|
4.2
|
27.2
|
1.0
|
C3B
|
A:HEC1010
|
4.2
|
25.9
|
1.0
|
C2A
|
A:HEC1010
|
4.3
|
27.5
|
1.0
|
C3A
|
A:HEC1010
|
4.3
|
29.5
|
1.0
|
C2C
|
A:HEC1010
|
4.3
|
24.9
|
1.0
|
C3C
|
A:HEC1010
|
4.4
|
24.4
|
1.0
|
CD1
|
A:LEU465
|
4.7
|
23.4
|
1.0
|
CE1
|
A:PHE296
|
4.9
|
37.4
|
1.0
|
|
Reference:
K.Suto,
M.Sato,
N.Shibata,
M.Kitamura,
Y.Morimoto,
Y.Takayama,
K.Ozawa,
H.Akutsu,
Y.Higuchi,
N.Yasuoka.
Structure of High-Molecular Weight Cytochrome C To Be Published.
Page generated: Sat Aug 3 20:30:50 2024
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