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Iron in PDB 2cz1: Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition

Enzymatic activity of Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition

All present enzymatic activity of Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition:
4.2.1.84;

Protein crystallography data

The structure of Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition, PDB code: 2cz1 was solved by Y.Kawano, K.Hashimoto, M.Odaka, H.Nakayama, K.Takio, I.Endo, N.Kamiya, Riken Structural Genomics/Proteomics Initiative(Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.39
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 115.329, 60.792, 82.024, 90.00, 124.96, 90.00
R / Rfree (%) 16.3 / 19

Other elements in 2cz1:

The structure of Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition (pdb code 2cz1). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition, PDB code: 2cz1:

Iron binding site 1 out of 1 in 2cz1

Go back to Iron Binding Sites List in 2cz1
Iron binding site 1 out of 1 in the Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe300

b:6.6
occ:1.00
 N A:CSO114 2.0 7.5 1.0
N A:SER113 2.0 7.2 1.0
O1 A:BUA1301 2.0 10.0 1.0
SG A:CSD112 2.1 7.4 1.0
SG A:CSO114 2.2 14.2 1.0
SG A:CYS109 2.3 8.2 1.0
C A:SER113 2.8 8.2 1.0
CA A:SER113 2.9 7.3 1.0
CA A:CSO114 3.0 7.5 1.0
CB A:CSO114 3.0 11.2 1.0
C A:CSD112 3.1 8.4 1.0
OD1 A:CSD112 3.1 8.4 1.0
OD2 A:CSD112 3.1 7.0 1.0
C4 A:BUA1301 3.1 13.4 1.0
CB A:CSD112 3.2 6.9 1.0
CB A:CYS109 3.3 6.6 1.0
OD A:CSO114 3.3 15.9 1.0
CA A:CSD112 3.5 5.9 1.0
O2 A:BUA1301 3.5 17.0 1.0
OG A:SER113 3.8 11.3 1.0
N A:CSD112 3.8 6.4 1.0
CB A:SER113 3.9 8.2 1.0
O A:SER113 4.0 8.3 1.0
O A:CSD112 4.2 8.0 1.0
C A:CSO114 4.3 7.5 1.0
C3 A:BUA1301 4.3 15.8 1.0
CA A:CYS109 4.7 7.5 1.0
NH2 B:ARG141 4.7 8.3 1.0
O A:CSO114 4.7 8.1 1.0
C A:LEU111 4.8 6.9 1.0
O A:THR162 4.9 10.8 1.0
O A:CYS109 4.9 7.6 1.0

Reference:

Y.Kawano, K.Hashimoto, M.Odaka, H.Nakayama, K.Takio, I.Endo, N.Kamiya. Photo-Activation State of Fe-Type Nhase with N-Ba in Anaerobic Condition To Be Published.
Page generated: Sun Dec 13 14:42:21 2020

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