Atomistry » Iron » PDB 2d3y-2e1q » 2d5x
Atomistry »
  Iron »
    PDB 2d3y-2e1q »
      2d5x »

Iron in PDB 2d5x: Crystal Structure of Carbonmonoxy Horse Hemoglobin Complexed with L35

Protein crystallography data

The structure of Crystal Structure of Carbonmonoxy Horse Hemoglobin Complexed with L35, PDB code: 2d5x was solved by T.Yokoyama, S.Neya, A.Tsuneshige, T.Yonetani, S.Y.Park, J.R.Tame, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.88 / 1.45
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 62.337, 107.442, 87.016, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 21.6

Other elements in 2d5x:

The structure of Crystal Structure of Carbonmonoxy Horse Hemoglobin Complexed with L35 also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Carbonmonoxy Horse Hemoglobin Complexed with L35 (pdb code 2d5x). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Carbonmonoxy Horse Hemoglobin Complexed with L35, PDB code: 2d5x:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 2d5x

Go back to Iron Binding Sites List in 2d5x
Iron binding site 1 out of 2 in the Crystal Structure of Carbonmonoxy Horse Hemoglobin Complexed with L35


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Carbonmonoxy Horse Hemoglobin Complexed with L35 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe142

b:12.5
occ:1.00
FE A:HEM142 0.0 12.5 1.0
C A:CMO1143 1.7 12.5 1.0
NC A:HEM142 2.0 12.1 1.0
NB A:HEM142 2.1 11.3 1.0
NA A:HEM142 2.1 13.4 1.0
ND A:HEM142 2.1 14.9 1.0
NE2 A:HIS87 2.1 13.2 1.0
O A:CMO1143 2.9 14.2 1.0
CE1 A:HIS87 3.0 12.5 1.0
C1C A:HEM142 3.1 13.1 1.0
C4B A:HEM142 3.1 12.0 1.0
C4A A:HEM142 3.1 13.2 1.0
C4C A:HEM142 3.1 13.6 1.0
C1B A:HEM142 3.1 11.4 1.0
C1A A:HEM142 3.1 14.2 1.0
C4D A:HEM142 3.1 15.2 1.0
C1D A:HEM142 3.1 13.9 1.0
CD2 A:HIS87 3.2 13.8 1.0
CHC A:HEM142 3.4 12.2 1.0
CHB A:HEM142 3.4 12.2 1.0
CHA A:HEM142 3.5 14.3 1.0
CHD A:HEM142 3.5 14.0 1.0
ND1 A:HIS87 4.2 12.5 1.0
CG A:HIS87 4.3 15.6 1.0
C2C A:HEM142 4.3 13.0 1.0
C3B A:HEM142 4.3 11.3 1.0
C3C A:HEM142 4.3 14.4 1.0
C2B A:HEM142 4.3 11.6 1.0
C2A A:HEM142 4.3 14.9 1.0
C3A A:HEM142 4.3 13.3 1.0
C3D A:HEM142 4.3 16.6 1.0
C2D A:HEM142 4.3 16.5 1.0
NE2 A:HIS58 4.4 16.0 1.0
CG2 A:VAL62 4.9 14.4 1.0

Iron binding site 2 out of 2 in 2d5x

Go back to Iron Binding Sites List in 2d5x
Iron binding site 2 out of 2 in the Crystal Structure of Carbonmonoxy Horse Hemoglobin Complexed with L35


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Carbonmonoxy Horse Hemoglobin Complexed with L35 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe147

b:11.8
occ:1.00
FE B:HEM147 0.0 11.8 1.0
C B:CMO1148 1.7 10.8 1.0
NC B:HEM147 2.0 10.8 1.0
NB B:HEM147 2.0 11.7 1.0
ND B:HEM147 2.0 12.4 1.0
NE2 B:HIS92 2.1 12.0 1.0
NA B:HEM147 2.1 12.7 1.0
O B:CMO1148 2.9 11.9 1.0
CE1 B:HIS92 3.0 11.9 1.0
C4C B:HEM147 3.0 13.1 1.0
C1C B:HEM147 3.0 12.0 1.0
C1D B:HEM147 3.1 12.4 1.0
C1B B:HEM147 3.1 12.0 1.0
C4D B:HEM147 3.1 14.2 1.0
C4A B:HEM147 3.1 13.2 1.0
C4B B:HEM147 3.1 11.7 1.0
C1A B:HEM147 3.1 14.5 1.0
CD2 B:HIS92 3.1 11.2 1.0
CHD B:HEM147 3.4 13.2 1.0
CHB B:HEM147 3.4 14.1 1.0
CHC B:HEM147 3.4 12.3 1.0
CHA B:HEM147 3.5 14.3 1.0
ND1 B:HIS92 4.2 12.3 1.0
C3C B:HEM147 4.2 12.3 1.0
CG B:HIS92 4.2 11.2 1.0
C2C B:HEM147 4.2 12.2 1.0
C2D B:HEM147 4.3 13.9 1.0
C2B B:HEM147 4.3 12.8 1.0
C3D B:HEM147 4.3 14.0 1.0
C3B B:HEM147 4.3 12.5 1.0
C3A B:HEM147 4.3 13.5 1.0
C2A B:HEM147 4.3 13.7 1.0
NE2 B:HIS63 4.5 15.8 1.0
CG2 B:VAL67 4.6 13.2 1.0

Reference:

T.Yokoyama, S.Neya, A.Tsuneshige, T.Yonetani, S.Y.Park, J.R.Tame. R-State Haemoglobin with Low Oxygen Affinity: Crystal Structures of Deoxy Human and Carbonmonoxy Horse Haemoglobin Bound to the Effector Molecule L35 J.Mol.Biol. V. 356 790 2006.
ISSN: ISSN 0022-2836
PubMed: 16403522
DOI: 10.1016/J.JMB.2005.12.018
Page generated: Sat Aug 3 20:43:20 2024

Last articles

Cl in 5TLL
Cl in 5TLS
Cl in 5TKS
Cl in 5TKU
Cl in 5TKT
Cl in 5TJZ
Cl in 5TJF
Cl in 5TIS
Cl in 5TK0
Cl in 5TJH
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy