Iron in PDB 2dp8: Carbohydrate Recognition By Lactoferrin: Crystal Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Trisaccharide at 2.5 A Resolution

The structure of Carbohydrate Recognition By Lactoferrin: Crystal Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Trisaccharide at 2.5 A Resolution, PDB code: 2dp8 was solved by N.Singh, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	63.082, 50.437, 65.790, 90.00, 107.53, 90.00
R / Rfree (%)	18.4 / 20

The structure of Carbohydrate Recognition By Lactoferrin: Crystal Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Trisaccharide at 2.5 A Resolution also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Iron atom in the Carbohydrate Recognition By Lactoferrin: Crystal Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Trisaccharide at 2.5 A Resolution (pdb code 2dp8). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Carbohydrate Recognition By Lactoferrin: Crystal Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Trisaccharide at 2.5 A Resolution, PDB code: 2dp8:

Iron binding site 1 out of 1 in the Carbohydrate Recognition By Lactoferrin: Crystal Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Trisaccharide at 2.5 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Carbohydrate Recognition By Lactoferrin: Crystal Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Trisaccharide at 2.5 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe690 b:2.9 occ:1.00 OH A:TYR526 1.8 10.9 1.0 OH A:TYR433 1.9 10.9 1.0 O2 A:CO3691 2.0 12.2 1.0 OD1 A:ASP395 2.0 10.4 1.0 O1 A:CO3691 2.1 11.4 1.0 NE2 A:HIS595 2.2 15.6 1.0 C A:CO3691 2.3 12.1 1.0 CZ A:TYR526 2.9 14.5 1.0 CZ A:TYR433 3.0 17.8 1.0 CE1 A:HIS595 3.1 15.3 1.0 CD2 A:HIS595 3.2 15.4 1.0 CG A:ASP395 3.2 16.1 1.0 O3 A:CO3691 3.6 13.0 1.0 CE1 A:TYR433 3.6 19.4 1.0 CE1 A:TYR526 3.7 17.1 1.0 CB A:ASP395 3.7 14.9 1.0 CE2 A:TYR526 3.8 15.2 1.0 CE2 A:TYR433 3.9 20.1 1.0 O A:HOH699 4.1 25.9 1.0 NH2 A:ARG463 4.2 29.1 1.0 OD2 A:ASP395 4.2 14.8 1.0 ND1 A:HIS595 4.3 13.2 1.0 CG A:HIS595 4.3 15.9 1.0 O A:HOH702 4.3 21.1 1.0 CA A:ASP395 4.5 15.5 1.0 CB A:THR464 4.6 18.9 1.0 N A:ALA465 4.7 18.7 1.0 NE A:ARG463 4.7 24.8 1.0 N A:THR464 4.8 19.4 1.0 CD1 A:TYR433 4.9 19.9 1.0 CZ A:ARG463 4.9 27.7 1.0 CD1 A:TYR526 5.0 16.7 1.0

N.Singh, S.Sharma, T.P.Singh. Carbohydrate Recognition By Lactoferrin: Crystal Structure of the Complex of C-Terminal Lobe of Bovine Lactoferrin with Trisaccharide at 2.5 A Resolution To Be Published.