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Iron in PDB 2dvc: Structure of the Bovine Lactoferrin C-Lobe Complex with Sucrose at 3.0 A Resolution

Protein crystallography data

The structure of Structure of the Bovine Lactoferrin C-Lobe Complex with Sucrose at 3.0 A Resolution, PDB code: 2dvc was solved by R.Mir, R.Prem Kumar, R.Bhardwaj, A.S.Ethayathulla, M.Sinha, N.Singh, A.Bhushan, S.Sharma, P.Kaur, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.84 / 3.00
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 63.457, 50.398, 65.915, 90.00, 107.79, 90.00
R / Rfree (%) 18 / 21.8

Other elements in 2dvc:

The structure of Structure of the Bovine Lactoferrin C-Lobe Complex with Sucrose at 3.0 A Resolution also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Structure of the Bovine Lactoferrin C-Lobe Complex with Sucrose at 3.0 A Resolution (pdb code 2dvc). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Structure of the Bovine Lactoferrin C-Lobe Complex with Sucrose at 3.0 A Resolution, PDB code: 2dvc:

Iron binding site 1 out of 1 in 2dvc

Go back to Iron Binding Sites List in 2dvc
Iron binding site 1 out of 1 in the Structure of the Bovine Lactoferrin C-Lobe Complex with Sucrose at 3.0 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of the Bovine Lactoferrin C-Lobe Complex with Sucrose at 3.0 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1002

b:17.1
occ:1.00
OH A:TYR526 2.0 13.7 1.0
OH A:TYR433 2.1 23.5 1.0
OD1 A:ASP395 2.1 15.9 1.0
NE2 A:HIS595 2.2 13.6 1.0
O2 A:CO31003 2.2 16.5 1.0
O1 A:CO31003 2.3 13.0 1.0
C A:CO31003 2.6 15.9 1.0
CZ A:TYR433 3.0 24.2 1.0
CZ A:TYR526 3.1 12.2 1.0
CE1 A:HIS595 3.2 14.3 1.0
CD2 A:HIS595 3.2 13.3 1.0
CG A:ASP395 3.2 14.3 1.0
CE1 A:TYR433 3.7 24.3 1.0
CB A:ASP395 3.8 13.5 1.0
CE1 A:TYR526 3.8 10.8 1.0
CE2 A:TYR433 3.8 24.3 1.0
O A:HOH1012 3.9 42.8 1.0
O3 A:CO31003 3.9 18.8 1.0
CE2 A:TYR526 3.9 12.3 1.0
OD2 A:ASP395 4.2 15.7 1.0
ND1 A:HIS595 4.3 13.7 1.0
CG A:HIS595 4.3 11.9 1.0
NH2 A:ARG463 4.3 25.9 1.0
CB A:THR464 4.3 15.0 1.0
CA A:ASP395 4.5 13.8 1.0
OG1 A:THR464 4.6 17.3 1.0
N A:THR464 4.7 13.3 1.0
NE A:ARG463 4.7 23.9 1.0
N A:ALA465 4.7 16.6 1.0
CD1 A:TYR433 4.9 22.9 1.0
N A:GLY396 4.9 13.1 1.0
CZ A:ARG463 5.0 25.3 1.0

Reference:

R.Mir, R.Prem Kumar, R.Bhardwaj, A.S.Ethayathulla, M.Sinha, N.Singh, A.Bhushan, S.Sharma, P.Kaur, T.P.Singh. Structure of the Bovine Lactoferrin C-Lobe Complex with Sucrose at 3.0 A Resolution To Be Published.
Page generated: Sun Dec 13 14:42:50 2020

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