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Iron in PDB 2exv: Crystal Structure of the F7A Mutant of the Cytochrome C551 From Pseudomonas Aeruginosa

Protein crystallography data

The structure of Crystal Structure of the F7A Mutant of the Cytochrome C551 From Pseudomonas Aeruginosa, PDB code: 2exv was solved by D.Bonivento, A.Di Matteo, A.Borgia, C.Travaglini-Allocatelli, M.Brunori, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.86
Space group P 65
Cell size a, b, c (Å), α, β, γ (°) 66.766, 66.766, 62.462, 90.00, 90.00, 120.00
R / Rfree (%) 17.5 / 23.3

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of the F7A Mutant of the Cytochrome C551 From Pseudomonas Aeruginosa (pdb code 2exv). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of the F7A Mutant of the Cytochrome C551 From Pseudomonas Aeruginosa, PDB code: 2exv:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 2exv

Go back to Iron Binding Sites List in 2exv
Iron binding site 1 out of 2 in the Crystal Structure of the F7A Mutant of the Cytochrome C551 From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of the F7A Mutant of the Cytochrome C551 From Pseudomonas Aeruginosa within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe83

b:35.0
occ:1.00
FE A:HEC83 0.0 35.0 1.0
NE2 A:HIS16 2.0 38.0 1.0
NC A:HEC83 2.0 33.8 1.0
ND A:HEC83 2.0 33.3 1.0
NB A:HEC83 2.0 33.5 1.0
NA A:HEC83 2.1 31.8 1.0
SD A:MET61 2.3 38.8 1.0
CD2 A:HIS16 2.9 39.5 1.0
C1C A:HEC83 3.0 35.2 1.0
C4D A:HEC83 3.0 33.3 1.0
CE1 A:HIS16 3.0 40.5 1.0
C4B A:HEC83 3.0 36.1 1.0
C1D A:HEC83 3.0 32.4 1.0
C1A A:HEC83 3.1 31.6 1.0
C4C A:HEC83 3.1 33.5 1.0
C4A A:HEC83 3.1 31.4 1.0
C1B A:HEC83 3.1 34.2 1.0
CHC A:HEC83 3.3 35.2 1.0
CHA A:HEC83 3.4 31.2 1.0
CHB A:HEC83 3.4 33.0 1.0
CG A:MET61 3.4 34.9 1.0
CHD A:HEC83 3.4 32.6 1.0
CE A:MET61 3.5 38.3 1.0
ND1 A:HIS16 4.1 40.1 1.0
CG A:HIS16 4.1 39.5 1.0
CB A:MET61 4.1 37.4 1.0
C3D A:HEC83 4.2 31.3 1.0
C2C A:HEC83 4.2 33.9 1.0
C2D A:HEC83 4.2 32.5 1.0
C3B A:HEC83 4.3 31.6 1.0
C2A A:HEC83 4.3 31.8 0.5
C3C A:HEC83 4.3 33.3 1.0
C3A A:HEC83 4.3 30.8 1.0
C2A A:HEC83 4.3 30.6 0.5
C2B A:HEC83 4.3 33.2 1.0

Iron binding site 2 out of 2 in 2exv

Go back to Iron Binding Sites List in 2exv
Iron binding site 2 out of 2 in the Crystal Structure of the F7A Mutant of the Cytochrome C551 From Pseudomonas Aeruginosa


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of the F7A Mutant of the Cytochrome C551 From Pseudomonas Aeruginosa within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe83

b:37.1
occ:1.00
FE C:HEC83 0.0 37.1 1.0
NE2 C:HIS16 2.0 38.8 1.0
NA C:HEC83 2.0 37.3 1.0
ND C:HEC83 2.0 36.6 1.0
NB C:HEC83 2.0 35.6 1.0
NC C:HEC83 2.1 37.1 1.0
SD C:MET61 2.3 39.3 1.0
CD2 C:HIS16 2.9 40.7 1.0
CE1 C:HIS16 3.0 39.7 1.0
C4D C:HEC83 3.0 36.2 1.0
C4A C:HEC83 3.0 36.3 1.0
C1D C:HEC83 3.0 38.2 1.0
C1A C:HEC83 3.0 36.0 1.0
C4B C:HEC83 3.0 37.4 1.0
C1C C:HEC83 3.1 37.5 1.0
C1B C:HEC83 3.1 36.6 1.0
C4C C:HEC83 3.1 38.2 1.0
CHC C:HEC83 3.4 36.0 1.0
CHA C:HEC83 3.4 36.3 1.0
CHB C:HEC83 3.4 36.2 1.0
CHD C:HEC83 3.4 36.9 1.0
CE C:MET61 3.5 38.6 1.0
CG C:MET61 3.5 37.5 1.0
CG C:HIS16 4.1 39.6 1.0
CB C:MET61 4.1 35.9 1.0
ND1 C:HIS16 4.1 38.5 1.0
C3A C:HEC83 4.2 35.7 1.0
C2D C:HEC83 4.2 38.0 1.0
C3D C:HEC83 4.2 36.4 1.0
C2A C:HEC83 4.3 36.8 1.0
C2B C:HEC83 4.3 35.8 1.0
C3B C:HEC83 4.3 34.2 1.0
C2C C:HEC83 4.3 35.3 1.0
C3C C:HEC83 4.3 36.4 1.0

Reference:

A.Borgia, D.Bonivento, C.Travaglini-Allocatelli, A.Di Matteo, M.Brunori. Unveiling A Hidden Folding Intermediate in C-Type Cytochromes By Protein Engineering J.Biol.Chem. V. 281 9331 2006.
ISSN: ISSN 0021-9258
PubMed: 16452476
DOI: 10.1074/JBC.M512127200
Page generated: Sun Dec 13 14:43:49 2020

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