Atomistry » Iron » PDB 2eut-2fkz » 2fct
Atomistry »
  Iron »
    PDB 2eut-2fkz »
      2fct »

Iron in PDB 2fct: SYRB2 with Fe(II), Chloride, and Alpha-Ketoglutarate

Protein crystallography data

The structure of SYRB2 with Fe(II), Chloride, and Alpha-Ketoglutarate, PDB code: 2fct was solved by L.C.Blasiak, C.L.Drennan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.80 / 1.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.150, 89.600, 124.890, 90.00, 90.00, 90.00
R / Rfree (%) 17.5 / 20.4

Other elements in 2fct:

The structure of SYRB2 with Fe(II), Chloride, and Alpha-Ketoglutarate also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the SYRB2 with Fe(II), Chloride, and Alpha-Ketoglutarate (pdb code 2fct). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the SYRB2 with Fe(II), Chloride, and Alpha-Ketoglutarate, PDB code: 2fct:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 2fct

Go back to Iron Binding Sites List in 2fct
Iron binding site 1 out of 2 in the SYRB2 with Fe(II), Chloride, and Alpha-Ketoglutarate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of SYRB2 with Fe(II), Chloride, and Alpha-Ketoglutarate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe900

b:10.1
occ:1.00
O2 A:AKG897 2.0 12.0 1.0
NE2 A:HIS116 2.2 6.5 1.0
O5 A:AKG897 2.2 11.3 1.0
NE2 A:HIS235 2.2 8.6 1.0
O A:HOH1072 2.2 14.6 1.0
CL A:CL901 2.5 13.6 1.0
C1 A:AKG897 2.8 12.7 1.0
C2 A:AKG897 2.9 14.2 1.0
CE1 A:HIS116 3.1 6.9 1.0
CD2 A:HIS116 3.1 7.5 1.0
CE1 A:HIS235 3.2 9.0 1.0
CD2 A:HIS235 3.2 7.5 1.0
O A:HOH915 3.7 15.8 1.0
O1 A:AKG897 4.0 14.7 1.0
NH1 A:ARG254 4.1 10.8 1.0
ND1 A:HIS116 4.2 6.3 1.0
CG A:HIS116 4.3 7.9 1.0
ND1 A:HIS235 4.3 7.3 1.0
CG A:HIS235 4.3 7.9 1.0
C3 A:AKG897 4.3 14.4 1.0
O A:HOH946 4.4 17.2 1.0
NH2 A:ARG254 4.4 12.3 1.0
CZ A:ARG254 4.7 12.5 1.0
C4 A:AKG897 4.9 14.0 1.0

Iron binding site 2 out of 2 in 2fct

Go back to Iron Binding Sites List in 2fct
Iron binding site 2 out of 2 in the SYRB2 with Fe(II), Chloride, and Alpha-Ketoglutarate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of SYRB2 with Fe(II), Chloride, and Alpha-Ketoglutarate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe899

b:11.9
occ:1.00
O2 B:AKG898 2.0 13.8 1.0
NE2 B:HIS116 2.1 12.1 1.0
NE2 B:HIS235 2.2 9.8 1.0
O B:HOH1019 2.3 16.1 1.0
O5 B:AKG898 2.3 11.9 1.0
CL B:CL902 2.4 19.4 1.0
C1 B:AKG898 2.9 11.4 1.0
C2 B:AKG898 2.9 13.5 1.0
CE1 B:HIS116 3.1 13.0 1.0
CD2 B:HIS116 3.1 11.1 1.0
CE1 B:HIS235 3.1 9.2 1.0
CD2 B:HIS235 3.2 11.4 1.0
O B:HOH927 3.7 14.5 1.0
O1 B:AKG898 4.1 13.2 1.0
ND1 B:HIS116 4.2 10.8 1.0
CG B:HIS116 4.3 11.3 1.0
ND1 B:HIS235 4.3 9.2 1.0
NH1 B:ARG254 4.3 14.7 1.0
CG B:HIS235 4.3 8.8 1.0
C3 B:AKG898 4.4 13.4 1.0
NH2 B:ARG254 4.5 17.5 1.0
CZ B:ARG254 4.9 15.4 1.0
C4 B:AKG898 5.0 13.7 1.0

Reference:

L.C.Blasiak, F.H.Vaillancourt, C.T.Walsh, C.L.Drennan. Crystal Structure of the Non-Haem Iron Halogenase SYRB2 in Syringomycin Biosynthesis. Nature V. 440 368 2006.
ISSN: ISSN 0028-0836
PubMed: 16541079
DOI: 10.1038/NATURE04544
Page generated: Sun Dec 13 14:43:57 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy