Atomistry » Iron » PDB 2fl0-2g6n » 2fnq
Atomistry »
  Iron »
    PDB 2fl0-2g6n »
      2fnq »

Iron in PDB 2fnq: Insights From the X-Ray Crystal Structure of Coral 8R- Lipoxygenase: Calcium Activation Via A C2-Like Domain and A Structural Basis of Product Chirality

Enzymatic activity of Insights From the X-Ray Crystal Structure of Coral 8R- Lipoxygenase: Calcium Activation Via A C2-Like Domain and A Structural Basis of Product Chirality

All present enzymatic activity of Insights From the X-Ray Crystal Structure of Coral 8R- Lipoxygenase: Calcium Activation Via A C2-Like Domain and A Structural Basis of Product Chirality:
1.13.11.40;

Protein crystallography data

The structure of Insights From the X-Ray Crystal Structure of Coral 8R- Lipoxygenase: Calcium Activation Via A C2-Like Domain and A Structural Basis of Product Chirality, PDB code: 2fnq was solved by M.L.Oldham, A.R.Brash, M.E.Newcomer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.00 / 3.20
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 69.554, 78.023, 176.490, 90.00, 96.66, 90.00
R / Rfree (%) 25.4 / 29.6

Other elements in 2fnq:

The structure of Insights From the X-Ray Crystal Structure of Coral 8R- Lipoxygenase: Calcium Activation Via A C2-Like Domain and A Structural Basis of Product Chirality also contains other interesting chemical elements:

Calcium (Ca) 6 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Insights From the X-Ray Crystal Structure of Coral 8R- Lipoxygenase: Calcium Activation Via A C2-Like Domain and A Structural Basis of Product Chirality (pdb code 2fnq). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Insights From the X-Ray Crystal Structure of Coral 8R- Lipoxygenase: Calcium Activation Via A C2-Like Domain and A Structural Basis of Product Chirality, PDB code: 2fnq:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 2fnq

Go back to Iron Binding Sites List in 2fnq
Iron binding site 1 out of 2 in the Insights From the X-Ray Crystal Structure of Coral 8R- Lipoxygenase: Calcium Activation Via A C2-Like Domain and A Structural Basis of Product Chirality


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Insights From the X-Ray Crystal Structure of Coral 8R- Lipoxygenase: Calcium Activation Via A C2-Like Domain and A Structural Basis of Product Chirality within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe2100

b:41.1
occ:1.00
 O A:ILE1066 1.7 39.2 1.0
C A:ILE1066 2.0 39.2 1.0
CE1 A:HIS943 2.2 38.3 1.0
NE2 A:HIS757 2.3 29.9 1.0
NE2 A:HIS762 2.3 27.4 1.0
ND2 A:ASN947 2.6 35.4 1.0
NE2 A:HIS943 2.7 38.3 1.0
CE1 A:HIS757 3.1 29.9 1.0
CE1 A:HIS762 3.2 27.4 1.0
CD2 A:HIS762 3.4 27.4 1.0
ND1 A:HIS943 3.4 38.3 1.0
CA A:ILE1066 3.5 39.2 1.0
CD2 A:HIS757 3.5 29.9 1.0
CG A:ASN947 3.5 35.4 1.0
CB A:ILE1066 4.0 33.1 1.0
CD2 A:HIS943 4.0 38.3 1.0
CB A:ASN947 4.2 35.4 1.0
N A:ILE1066 4.2 39.2 1.0
ND1 A:HIS757 4.3 29.9 1.0
OD1 A:ASN947 4.3 35.4 1.0
CG A:HIS943 4.4 38.3 1.0
ND1 A:HIS762 4.4 27.4 1.0
CG2 A:ILE1066 4.5 33.1 1.0
CG A:HIS762 4.5 27.4 1.0
CG A:HIS757 4.5 29.9 1.0
CD1 A:LEU1000 4.5 42.8 1.0
CG2 A:THR1064 4.7 43.1 1.0
O A:LEU1000 5.0 37.4 1.0

Iron binding site 2 out of 2 in 2fnq

Go back to Iron Binding Sites List in 2fnq
Iron binding site 2 out of 2 in the Insights From the X-Ray Crystal Structure of Coral 8R- Lipoxygenase: Calcium Activation Via A C2-Like Domain and A Structural Basis of Product Chirality


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Insights From the X-Ray Crystal Structure of Coral 8R- Lipoxygenase: Calcium Activation Via A C2-Like Domain and A Structural Basis of Product Chirality within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe2100

b:41.1
occ:1.00
 O B:ILE1066 1.7 39.2 1.0
C B:ILE1066 2.0 39.2 1.0
CE1 B:HIS943 2.2 38.3 1.0
NE2 B:HIS757 2.3 29.9 1.0
NE2 B:HIS762 2.3 27.4 1.0
ND2 B:ASN947 2.6 35.4 1.0
NE2 B:HIS943 2.7 38.3 1.0
CE1 B:HIS757 3.1 29.9 1.0
CE1 B:HIS762 3.2 27.4 1.0
CD2 B:HIS762 3.4 27.4 1.0
ND1 B:HIS943 3.4 38.3 1.0
CA B:ILE1066 3.5 39.2 1.0
CD2 B:HIS757 3.5 29.9 1.0
CG B:ASN947 3.5 35.4 1.0
CB B:ILE1066 4.0 33.1 1.0
CD2 B:HIS943 4.0 38.3 1.0
CB B:ASN947 4.2 35.4 1.0
N B:ILE1066 4.2 39.2 1.0
ND1 B:HIS757 4.3 29.9 1.0
OD1 B:ASN947 4.3 35.4 1.0
CG B:HIS943 4.4 38.3 1.0
ND1 B:HIS762 4.4 27.4 1.0
CG2 B:ILE1066 4.5 33.1 1.0
CG B:HIS762 4.5 27.4 1.0
CG B:HIS757 4.5 29.9 1.0
CD1 B:LEU1000 4.5 42.8 1.0
CG2 B:THR1064 4.7 43.1 1.0
O B:LEU1000 5.0 37.4 1.0

Reference:

M.L.Oldham, A.R.Brash, M.E.Newcomer. Insights From the X-Ray Crystal Structure of Coral 8R-Lipoxygenase: Calcium Activation Via A C2-Like Domain and A Structural Basis of Product Chirality. J.Biol.Chem. V. 280 39545 2005.
ISSN: ISSN 0021-9258
PubMed: 16162493
DOI: 10.1074/JBC.M506675200
Page generated: Sun Dec 13 14:44:24 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy