Atomistry » Iron » PDB 2fl0-2g6n » 2fyu
Atomistry »
  Iron »
    PDB 2fl0-2g6n »
      2fyu »

Iron in PDB 2fyu: Crystal Structure of Bovine Heart Mitochondrial BC1 with JG144 Inhibitor

Enzymatic activity of Crystal Structure of Bovine Heart Mitochondrial BC1 with JG144 Inhibitor

All present enzymatic activity of Crystal Structure of Bovine Heart Mitochondrial BC1 with JG144 Inhibitor:
1.10.2.2;

Protein crystallography data

The structure of Crystal Structure of Bovine Heart Mitochondrial BC1 with JG144 Inhibitor, PDB code: 2fyu was solved by D.Xia, L.Esser, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 2.26
Space group I 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 154.263, 154.263, 590.191, 90.00, 90.00, 90.00
R / Rfree (%) 24.8 / 28.3

Other elements in 2fyu:

The structure of Crystal Structure of Bovine Heart Mitochondrial BC1 with JG144 Inhibitor also contains other interesting chemical elements:

Fluorine (F) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Bovine Heart Mitochondrial BC1 with JG144 Inhibitor (pdb code 2fyu). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 5 binding sites of Iron where determined in the Crystal Structure of Bovine Heart Mitochondrial BC1 with JG144 Inhibitor, PDB code: 2fyu:
Jump to Iron binding site number: 1; 2; 3; 4; 5;

Iron binding site 1 out of 5 in 2fyu

Go back to Iron Binding Sites List in 2fyu
Iron binding site 1 out of 5 in the Crystal Structure of Bovine Heart Mitochondrial BC1 with JG144 Inhibitor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Bovine Heart Mitochondrial BC1 with JG144 Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe381

b:14.0
occ:1.00
FE C:HEM381 0.0 14.0 1.0
ND C:HEM381 2.0 24.3 1.0
NB C:HEM381 2.0 31.0 1.0
NC C:HEM381 2.0 27.4 1.0
NA C:HEM381 2.0 25.9 1.0
NE2 C:HIS182 2.2 8.5 1.0
NE2 C:HIS83 2.3 7.7 1.0
C4D C:HEM381 3.0 16.5 1.0
C1A C:HEM381 3.0 21.4 1.0
C4C C:HEM381 3.0 24.8 1.0
C1D C:HEM381 3.0 20.0 1.0
C4A C:HEM381 3.0 27.5 1.0
C1C C:HEM381 3.0 25.2 1.0
C4B C:HEM381 3.0 28.1 1.0
C1B C:HEM381 3.1 28.8 1.0
CE1 C:HIS83 3.1 19.0 1.0
CE1 C:HIS182 3.1 10.2 1.0
CD2 C:HIS182 3.2 6.2 1.0
CD2 C:HIS83 3.3 17.7 1.0
CHA C:HEM381 3.4 13.8 1.0
CHC C:HEM381 3.4 22.1 1.0
CHD C:HEM381 3.5 27.1 1.0
CHB C:HEM381 3.5 30.9 1.0
C3D C:HEM381 4.2 20.5 1.0
ND1 C:HIS182 4.3 15.3 1.0
C2D C:HEM381 4.3 25.1 1.0
C2A C:HEM381 4.3 16.9 1.0
C3C C:HEM381 4.3 19.6 1.0
C3A C:HEM381 4.3 23.2 1.0
ND1 C:HIS83 4.3 18.3 1.0
C2C C:HEM381 4.3 28.1 1.0
C3B C:HEM381 4.3 28.3 1.0
CG C:HIS182 4.3 15.3 1.0
C2B C:HEM381 4.3 28.9 1.0
CG C:HIS83 4.4 18.8 1.0
CA C:GLY130 4.9 19.7 1.0

Iron binding site 2 out of 5 in 2fyu

Go back to Iron Binding Sites List in 2fyu
Iron binding site 2 out of 5 in the Crystal Structure of Bovine Heart Mitochondrial BC1 with JG144 Inhibitor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Bovine Heart Mitochondrial BC1 with JG144 Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe382

b:18.9
occ:1.00
FE C:HEM382 0.0 18.9 1.0
NB C:HEM382 2.0 28.0 1.0
NA C:HEM382 2.0 19.8 1.0
ND C:HEM382 2.0 23.9 1.0
NC C:HEM382 2.0 22.9 1.0
NE2 C:HIS196 2.2 13.3 1.0
NE2 C:HIS97 2.3 17.3 1.0
C4A C:HEM382 3.0 22.3 1.0
C1A C:HEM382 3.0 18.0 1.0
C4C C:HEM382 3.0 23.8 1.0
C1B C:HEM382 3.0 24.7 1.0
C1D C:HEM382 3.1 10.8 1.0
C4B C:HEM382 3.1 24.1 1.0
C1C C:HEM382 3.1 23.3 1.0
C4D C:HEM382 3.1 20.1 1.0
CD2 C:HIS196 3.1 9.6 1.0
CD2 C:HIS97 3.2 24.3 1.0
CE1 C:HIS196 3.2 16.5 1.0
CE1 C:HIS97 3.3 21.1 1.0
CHB C:HEM382 3.4 27.7 1.0
CHA C:HEM382 3.5 12.6 1.0
CHC C:HEM382 3.5 26.6 1.0
CHD C:HEM382 3.5 17.0 1.0
C3A C:HEM382 4.2 28.6 1.0
C2A C:HEM382 4.2 21.1 1.0
ND1 C:HIS196 4.3 9.3 1.0
C2D C:HEM382 4.3 10.0 1.0
C3D C:HEM382 4.3 19.1 1.0
C2B C:HEM382 4.3 27.1 1.0
CG C:HIS196 4.3 13.9 1.0
C3C C:HEM382 4.3 23.3 1.0
C3B C:HEM382 4.3 26.6 1.0
C2C C:HEM382 4.3 26.9 1.0
CG C:HIS97 4.3 16.3 1.0
ND1 C:HIS97 4.4 22.7 1.0
O C:HOH1046 4.9 48.5 1.0
NH2 C:ARG100 5.0 26.6 1.0

Iron binding site 3 out of 5 in 2fyu

Go back to Iron Binding Sites List in 2fyu
Iron binding site 3 out of 5 in the Crystal Structure of Bovine Heart Mitochondrial BC1 with JG144 Inhibitor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Bovine Heart Mitochondrial BC1 with JG144 Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Fe242

b:12.7
occ:1.00
FE D:HEM242 0.0 12.7 1.0
NC D:HEM242 2.0 12.0 1.0
ND D:HEM242 2.0 8.7 1.0
NB D:HEM242 2.0 11.2 1.0
NA D:HEM242 2.1 11.5 1.0
NE2 D:HIS41 2.3 19.5 1.0
SD D:MET160 2.4 18.0 1.0
C1A D:HEM242 3.0 11.1 1.0
C4A D:HEM242 3.0 10.3 1.0
C1C D:HEM242 3.0 12.7 1.0
C4B D:HEM242 3.0 13.8 1.0
C4D D:HEM242 3.0 7.4 1.0
C4C D:HEM242 3.1 15.5 1.0
C1B D:HEM242 3.1 16.5 1.0
C1D D:HEM242 3.1 9.9 1.0
CD2 D:HIS41 3.2 24.0 1.0
CE1 D:HIS41 3.3 23.3 1.0
CHA D:HEM242 3.4 8.4 1.0
CHC D:HEM242 3.4 18.1 1.0
CHB D:HEM242 3.5 12.5 1.0
CHD D:HEM242 3.5 15.0 1.0
CE D:MET160 3.7 12.6 1.0
CG D:MET160 3.7 21.1 1.0
C3A D:HEM242 4.3 7.3 1.0
C3D D:HEM242 4.3 14.4 1.0
C2A D:HEM242 4.3 8.7 1.0
C2D D:HEM242 4.3 12.5 1.0
C2C D:HEM242 4.3 15.4 1.0
C3C D:HEM242 4.3 17.3 1.0
C3B D:HEM242 4.3 16.3 1.0
C2B D:HEM242 4.3 20.7 1.0
ND1 D:HIS41 4.4 28.9 1.0
CG D:HIS41 4.4 26.0 1.0
CB D:MET160 4.4 20.9 1.0

Iron binding site 4 out of 5 in 2fyu

Go back to Iron Binding Sites List in 2fyu
Iron binding site 4 out of 5 in the Crystal Structure of Bovine Heart Mitochondrial BC1 with JG144 Inhibitor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Bovine Heart Mitochondrial BC1 with JG144 Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe200

b:71.1
occ:1.00
FE1 E:FES200 0.0 71.1 1.0
SG E:CYS158 2.2 20.0 1.0
S1 E:FES200 2.2 77.8 1.0
S2 E:FES200 2.2 73.0 1.0
SG E:CYS139 2.3 13.5 1.0
FE2 E:FES200 2.8 65.9 1.0
CB E:CYS158 3.2 22.6 1.0
CB E:CYS139 3.2 13.4 1.0
CB E:HIS141 4.0 10.5 1.0
OG E:SER163 4.1 26.3 1.0
ND1 E:HIS141 4.2 2.0 1.0
CB E:SER163 4.3 19.8 1.0
CB E:CYS160 4.3 21.0 1.0
CB E:CYS144 4.4 14.6 1.0
ND1 E:HIS161 4.5 3.2 1.0
CG E:HIS141 4.6 8.7 1.0
CA E:CYS158 4.6 23.1 1.0
N E:LEU142 4.7 10.4 1.0
CA E:CYS139 4.7 13.7 1.0
N E:HIS161 4.8 20.0 1.0
O E:CYS158 4.9 23.1 1.0
N E:CYS144 4.9 13.2 1.0
C E:CYS158 5.0 23.2 1.0
O E:CYS144 5.0 15.1 1.0
CA E:HIS141 5.0 10.6 1.0

Iron binding site 5 out of 5 in 2fyu

Go back to Iron Binding Sites List in 2fyu
Iron binding site 5 out of 5 in the Crystal Structure of Bovine Heart Mitochondrial BC1 with JG144 Inhibitor


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystal Structure of Bovine Heart Mitochondrial BC1 with JG144 Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe200

b:65.9
occ:1.00
FE2 E:FES200 0.0 65.9 1.0
ND1 E:HIS141 2.1 2.0 1.0
ND1 E:HIS161 2.1 3.2 1.0
S2 E:FES200 2.2 73.0 1.0
S1 E:FES200 2.2 77.8 1.0
FE1 E:FES200 2.8 71.1 1.0
CE1 E:HIS141 2.9 8.5 1.0
CG E:HIS161 3.0 15.5 1.0
CE1 E:HIS161 3.1 9.1 1.0
CG E:HIS141 3.1 8.7 1.0
CB E:HIS161 3.3 19.6 1.0
CB E:HIS141 3.5 10.5 1.0
N E:HIS161 3.8 20.0 1.0
CB E:CYS160 4.0 21.0 1.0
NE2 E:HIS141 4.1 3.6 1.0
CA E:HIS161 4.1 19.9 1.0
CD2 E:HIS161 4.2 14.4 1.0
NE2 E:HIS161 4.2 3.9 1.0
CD2 E:HIS141 4.2 2.0 1.0
N E:LEU142 4.2 10.4 1.0
CB E:LEU142 4.3 11.0 1.0
SG E:CYS158 4.4 20.0 1.0
SG E:CYS139 4.5 13.5 1.0
C E:CYS160 4.5 20.5 1.0
CG E:LEU142 4.7 13.6 1.0
CD1 E:LEU142 4.7 8.9 1.0
CA E:HIS141 4.8 10.6 1.0
CA E:LEU142 4.8 10.7 1.0
CG E:PRO175 4.8 17.2 1.0
CA E:CYS160 4.9 21.1 1.0
C E:HIS141 4.9 10.2 1.0
C E:HIS161 4.9 20.1 1.0

Reference:

L.Esser, X.Gong, S.Yang, L.Yu, C.A.Yu, D.Xia. Surface-Modulated Motion Switch: Capture and Release of Iron-Sulfur Protein in the Cytochrome BC1 Complex. Proc.Natl.Acad.Sci.Usa V. 103 13045 2006.
ISSN: ISSN 0027-8424
PubMed: 16924113
DOI: 10.1073/PNAS.0601149103
Page generated: Thu Jul 17 01:20:40 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy