Atomistry » Iron » PDB 2fl0-2g6n » 2g36
Atomistry »
  Iron »
    PDB 2fl0-2g6n »
      2g36 »

Iron in PDB 2g36: Crystal Structure of Tryptophanyl-Trna Synthetase (Ec 6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (TM0492) From Thermotoga Maritima at 2.50 A Resolution

Enzymatic activity of Crystal Structure of Tryptophanyl-Trna Synthetase (Ec 6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (TM0492) From Thermotoga Maritima at 2.50 A Resolution

All present enzymatic activity of Crystal Structure of Tryptophanyl-Trna Synthetase (Ec 6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (TM0492) From Thermotoga Maritima at 2.50 A Resolution:
6.1.1.2;

Protein crystallography data

The structure of Crystal Structure of Tryptophanyl-Trna Synthetase (Ec 6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (TM0492) From Thermotoga Maritima at 2.50 A Resolution, PDB code: 2g36 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.64 / 2.50
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 122.890, 152.730, 53.070, 90.00, 90.00, 90.00
R / Rfree (%) 19.4 / 25.6

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Tryptophanyl-Trna Synthetase (Ec 6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (TM0492) From Thermotoga Maritima at 2.50 A Resolution (pdb code 2g36). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of Tryptophanyl-Trna Synthetase (Ec 6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (TM0492) From Thermotoga Maritima at 2.50 A Resolution, PDB code: 2g36:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 2g36

Go back to Iron Binding Sites List in 2g36
Iron binding site 1 out of 4 in the Crystal Structure of Tryptophanyl-Trna Synthetase (Ec 6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (TM0492) From Thermotoga Maritima at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Tryptophanyl-Trna Synthetase (Ec 6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (TM0492) From Thermotoga Maritima at 2.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe400

b:28.6
occ:1.00
FE1 A:SF4400 0.0 28.6 1.0
S4 A:SF4400 2.3 28.7 1.0
S2 A:SF4400 2.3 36.1 1.0
S3 A:SF4400 2.3 30.9 1.0
SG A:CYS259 2.3 32.6 1.0
FE4 A:SF4400 2.6 26.8 1.0
FE2 A:SF4400 2.7 27.4 1.0
FE3 A:SF4400 2.7 24.4 1.0
CB A:CYS259 3.2 29.9 1.0
S1 A:SF4400 3.9 26.7 1.0
CA A:CYS259 4.3 29.6 1.0
NH1 A:ARG224 4.3 16.5 1.0
CD A:ARG224 4.3 25.4 1.0
CG A:PRO233 4.6 27.7 1.0
SG A:CYS236 4.7 30.9 1.0
SG A:CYS266 4.7 25.6 1.0
SG A:CYS269 4.8 30.6 1.0
CA A:PRO233 4.9 28.1 1.0
N A:PRO233 5.0 27.6 1.0
CB A:PRO233 5.0 28.5 1.0

Iron binding site 2 out of 4 in 2g36

Go back to Iron Binding Sites List in 2g36
Iron binding site 2 out of 4 in the Crystal Structure of Tryptophanyl-Trna Synthetase (Ec 6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (TM0492) From Thermotoga Maritima at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Tryptophanyl-Trna Synthetase (Ec 6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (TM0492) From Thermotoga Maritima at 2.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe400

b:27.4
occ:1.00
FE2 A:SF4400 0.0 27.4 1.0
SG A:CYS236 2.3 30.9 1.0
S1 A:SF4400 2.3 26.7 1.0
S3 A:SF4400 2.3 30.9 1.0
S4 A:SF4400 2.3 28.7 1.0
FE4 A:SF4400 2.6 26.8 1.0
FE3 A:SF4400 2.7 24.4 1.0
FE1 A:SF4400 2.7 28.6 1.0
CB A:CYS236 3.4 29.1 1.0
S2 A:SF4400 3.9 36.1 1.0
CB A:VAL238 4.1 24.8 1.0
CB A:THR220 4.1 29.4 1.0
CG2 A:THR220 4.3 29.5 1.0
N A:ASP221 4.4 32.8 1.0
CA A:THR220 4.5 31.1 1.0
CG2 A:VAL238 4.5 19.9 1.0
SG A:CYS266 4.7 25.6 1.0
CA A:CYS236 4.7 28.2 1.0
N A:TRP239 4.8 27.2 1.0
SG A:CYS269 4.8 30.6 1.0
CG1 A:VAL238 4.8 18.9 1.0
SG A:CYS259 4.9 32.6 1.0
C A:THR220 5.0 32.9 1.0

Iron binding site 3 out of 4 in 2g36

Go back to Iron Binding Sites List in 2g36
Iron binding site 3 out of 4 in the Crystal Structure of Tryptophanyl-Trna Synthetase (Ec 6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (TM0492) From Thermotoga Maritima at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Tryptophanyl-Trna Synthetase (Ec 6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (TM0492) From Thermotoga Maritima at 2.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe400

b:24.4
occ:1.00
FE3 A:SF4400 0.0 24.4 1.0
SG A:CYS269 2.3 30.6 1.0
S2 A:SF4400 2.3 36.1 1.0
S1 A:SF4400 2.3 26.7 1.0
S4 A:SF4400 2.3 28.7 1.0
FE2 A:SF4400 2.7 27.4 1.0
FE1 A:SF4400 2.7 28.6 1.0
FE4 A:SF4400 2.7 26.8 1.0
CB A:CYS269 3.2 28.1 1.0
S3 A:SF4400 4.0 30.9 1.0
CG1 A:VAL255 4.4 25.1 1.0
CG1 A:VAL238 4.5 18.9 1.0
CA A:CYS269 4.6 27.3 1.0
CB A:VAL238 4.7 24.8 1.0
SG A:CYS266 4.7 25.6 1.0
CA A:CYS266 4.7 23.6 1.0
SG A:CYS236 4.8 30.9 1.0
SG A:CYS259 4.8 32.6 1.0
CB A:CYS259 4.9 29.9 1.0

Iron binding site 4 out of 4 in 2g36

Go back to Iron Binding Sites List in 2g36
Iron binding site 4 out of 4 in the Crystal Structure of Tryptophanyl-Trna Synthetase (Ec 6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (TM0492) From Thermotoga Maritima at 2.50 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Tryptophanyl-Trna Synthetase (Ec 6.1.1.2) (Tryptophan-Trna Ligase)(Trprs) (TM0492) From Thermotoga Maritima at 2.50 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe400

b:26.8
occ:1.00
FE4 A:SF4400 0.0 26.8 1.0
SG A:CYS266 2.3 25.6 1.0
S3 A:SF4400 2.3 30.9 1.0
S1 A:SF4400 2.3 26.7 1.0
S2 A:SF4400 2.3 36.1 1.0
FE2 A:SF4400 2.6 27.4 1.0
FE1 A:SF4400 2.6 28.6 1.0
FE3 A:SF4400 2.7 24.4 1.0
CB A:CYS266 3.3 22.2 1.0
CA A:CYS266 3.7 23.6 1.0
S4 A:SF4400 3.9 28.7 1.0
NH1 A:ARG224 4.0 16.5 1.0
CD A:ARG224 4.1 25.4 1.0
CG2 A:THR220 4.2 29.5 1.0
CB A:THR220 4.2 29.4 1.0
N A:CYS266 4.3 23.9 1.0
SG A:CYS259 4.7 32.6 1.0
SG A:CYS269 4.7 30.6 1.0
SG A:CYS236 4.7 30.9 1.0
CB A:CYS269 4.7 28.1 1.0
CZ A:ARG224 4.9 23.0 1.0
NE A:ARG224 4.9 19.9 1.0
C A:CYS266 5.0 25.3 1.0
OG1 A:THR220 5.0 26.7 1.0

Reference:

G.W.Han, X.L.Yang, D.Mcmullan, Y.E.Chong, S.S.Krishna, C.L.Rife, D.Weekes, S.M.Brittain, P.Abdubek, E.Ambing, T.Astakhova, H.L.Axelrod, D.Carlton, J.Caruthers, H.J.Chiu, T.Clayton, L.Duan, J.Feuerhelm, J.C.Grant, S.K.Grzechnik, L.Jaroszewski, K.K.Jin, H.E.Klock, M.W.Knuth, A.Kumar, D.Marciano, M.D.Miller, A.T.Morse, E.Nigoghossian, L.Okach, J.Paulsen, R.Reyes, H.Van Den Bedem, A.White, G.Wolf, Q.Xu, K.O.Hodgson, J.Wooley, A.M.Deacon, A.Godzik, S.A.Lesley, M.A.Elsliger, P.Schimmel, I.A.Wilson. Structure of A Tryptophanyl-Trna Synthetase Containing An Iron-Sulfur Cluster. Acta Crystallogr.,Sect.F V. 66 1326 2010.
ISSN: ESSN 1744-3091
PubMed: 20944229
DOI: 10.1107/S1744309110037619
Page generated: Sat Aug 3 21:47:07 2024

Last articles

Cl in 2XYN
Cl in 2XX2
Cl in 2XYD
Cl in 2XY9
Cl in 2XXV
Cl in 2XXW
Cl in 2XXU
Cl in 2XXT
Cl in 2XXR
Cl in 2XVL
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy