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Iron in PDB 2g6i: Structure of Rat Nnos Heme Domain (BH2-Bound) in the Reduced Form

Enzymatic activity of Structure of Rat Nnos Heme Domain (BH2-Bound) in the Reduced Form

All present enzymatic activity of Structure of Rat Nnos Heme Domain (BH2-Bound) in the Reduced Form:
1.14.13.39;

Protein crystallography data

The structure of Structure of Rat Nnos Heme Domain (BH2-Bound) in the Reduced Form, PDB code: 2g6i was solved by H.Li, J.Igarashi, J.Jamal, W.Yang, T.L.Poulos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.24 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.600, 110.580, 164.530, 90.00, 90.00, 90.00
R / Rfree (%) 22.6 / 26.3

Other elements in 2g6i:

The structure of Structure of Rat Nnos Heme Domain (BH2-Bound) in the Reduced Form also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Rat Nnos Heme Domain (BH2-Bound) in the Reduced Form (pdb code 2g6i). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Structure of Rat Nnos Heme Domain (BH2-Bound) in the Reduced Form, PDB code: 2g6i:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 2g6i

Go back to Iron Binding Sites List in 2g6i
Iron binding site 1 out of 2 in the Structure of Rat Nnos Heme Domain (BH2-Bound) in the Reduced Form


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Rat Nnos Heme Domain (BH2-Bound) in the Reduced Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe750

b:23.5
occ:1.00
FE A:HEM750 0.0 23.5 1.0
NC A:HEM750 2.0 22.2 1.0
NA A:HEM750 2.0 25.6 1.0
ND A:HEM750 2.1 26.4 1.0
NB A:HEM750 2.1 25.5 1.0
SG A:CYS415 2.3 25.9 1.0
C4C A:HEM750 3.0 24.6 1.0
C1C A:HEM750 3.0 25.5 1.0
C4A A:HEM750 3.1 25.9 1.0
C1A A:HEM750 3.1 25.0 1.0
C1B A:HEM750 3.1 24.6 1.0
C1D A:HEM750 3.1 25.0 1.0
C4B A:HEM750 3.1 25.2 1.0
C4D A:HEM750 3.1 25.6 1.0
CB A:CYS415 3.3 21.9 1.0
CHD A:HEM750 3.4 25.2 1.0
CHB A:HEM750 3.5 23.9 1.0
CHC A:HEM750 3.5 24.7 1.0
CHA A:HEM750 3.5 24.5 1.0
CA A:CYS415 4.1 22.2 1.0
NH1 A:ARG770 4.2 29.2 1.0
C3C A:HEM750 4.2 26.1 1.0
C2C A:HEM750 4.3 25.0 1.0
C2A A:HEM750 4.3 25.5 1.0
C3A A:HEM750 4.3 24.8 1.0
C2B A:HEM750 4.3 26.7 1.0
C2D A:HEM750 4.3 23.7 1.0
C3B A:HEM750 4.4 27.0 1.0
C3D A:HEM750 4.4 24.8 1.0
NE1 A:TRP409 4.4 24.7 1.0
CZ A:ARG770 4.6 30.1 1.0
N A:GLY417 4.8 24.1 1.0
C A:CYS415 4.9 22.7 1.0
NH2 A:ARG770 4.9 24.9 1.0
N A:VAL416 5.0 22.3 1.0

Iron binding site 2 out of 2 in 2g6i

Go back to Iron Binding Sites List in 2g6i
Iron binding site 2 out of 2 in the Structure of Rat Nnos Heme Domain (BH2-Bound) in the Reduced Form


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Rat Nnos Heme Domain (BH2-Bound) in the Reduced Form within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe750

b:22.7
occ:1.00
FE B:HEM750 0.0 22.7 1.0
NC B:HEM750 2.0 21.2 1.0
NB B:HEM750 2.0 22.8 1.0
ND B:HEM750 2.0 23.5 1.0
NA B:HEM750 2.0 24.5 1.0
SG B:CYS415 2.3 24.9 1.0
C4C B:HEM750 3.0 23.0 1.0
C1D B:HEM750 3.0 23.2 1.0
C1C B:HEM750 3.0 21.7 1.0
C4B B:HEM750 3.1 24.2 1.0
C1B B:HEM750 3.1 25.0 1.0
C1A B:HEM750 3.1 23.4 1.0
C4D B:HEM750 3.1 22.2 1.0
C4A B:HEM750 3.1 25.1 1.0
CB B:CYS415 3.3 20.2 1.0
CHD B:HEM750 3.4 23.4 1.0
CHC B:HEM750 3.4 20.8 1.0
CHA B:HEM750 3.5 21.6 1.0
CHB B:HEM750 3.5 25.9 1.0
NH1 B:ARG771 4.1 27.8 1.0
CA B:CYS415 4.1 20.4 1.0
C2C B:HEM750 4.3 23.3 1.0
C3C B:HEM750 4.3 25.1 1.0
C3B B:HEM750 4.3 26.9 1.0
C2B B:HEM750 4.3 24.8 1.0
C2D B:HEM750 4.3 23.1 1.0
C2A B:HEM750 4.3 23.4 1.0
C3A B:HEM750 4.4 22.9 1.0
C3D B:HEM750 4.4 25.7 1.0
NE1 B:TRP409 4.4 22.2 1.0
CZ B:ARG771 4.5 29.6 1.0
NH2 B:ARG771 4.8 26.6 1.0
N B:GLY417 4.8 22.6 1.0
C B:CYS415 4.9 23.2 1.0
N B:VAL416 5.0 20.6 1.0

Reference:

H.Li, J.Igarashi, J.Jamal, W.Yang, T.L.Poulos. Structural Studies of Constitutive Nitric Oxide Synthases with Diatomic Ligands Bound. J.Biol.Inorg.Chem. V. 11 753 2006.
ISSN: ISSN 0949-8257
PubMed: 16804678
DOI: 10.1007/S00775-006-0123-8
Page generated: Sat Aug 3 21:47:57 2024

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