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Iron in PDB 2g6j: Structure of Rat Nnos (L337N) Heme Domain (4-Aminobiopterin Bound) Complexed with No

Enzymatic activity of Structure of Rat Nnos (L337N) Heme Domain (4-Aminobiopterin Bound) Complexed with No

All present enzymatic activity of Structure of Rat Nnos (L337N) Heme Domain (4-Aminobiopterin Bound) Complexed with No:
1.14.13.39;

Protein crystallography data

The structure of Structure of Rat Nnos (L337N) Heme Domain (4-Aminobiopterin Bound) Complexed with No, PDB code: 2g6j was solved by H.Li, J.Igarashi, J.Jamal, W.Yang, T.L.Poulos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.22 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.520, 110.490, 164.910, 90.00, 90.00, 90.00
R / Rfree (%) 21.3 / 26.9

Other elements in 2g6j:

The structure of Structure of Rat Nnos (L337N) Heme Domain (4-Aminobiopterin Bound) Complexed with No also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Rat Nnos (L337N) Heme Domain (4-Aminobiopterin Bound) Complexed with No (pdb code 2g6j). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Structure of Rat Nnos (L337N) Heme Domain (4-Aminobiopterin Bound) Complexed with No, PDB code: 2g6j:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 2g6j

Go back to Iron Binding Sites List in 2g6j
Iron binding site 1 out of 2 in the Structure of Rat Nnos (L337N) Heme Domain (4-Aminobiopterin Bound) Complexed with No


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Rat Nnos (L337N) Heme Domain (4-Aminobiopterin Bound) Complexed with No within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe750

b:36.9
occ:1.00
FE A:HEM750 0.0 36.9 1.0
N A:NO910 1.8 38.6 1.0
NC A:HEM750 2.0 30.6 1.0
NA A:HEM750 2.0 34.1 1.0
ND A:HEM750 2.0 34.5 1.0
NB A:HEM750 2.0 32.4 1.0
SG A:CYS415 2.4 36.3 1.0
O A:NO910 2.8 39.0 1.0
C4C A:HEM750 3.0 32.1 1.0
C1C A:HEM750 3.0 31.5 1.0
C4D A:HEM750 3.0 35.2 1.0
C1A A:HEM750 3.1 35.0 1.0
C4A A:HEM750 3.1 34.2 1.0
C1B A:HEM750 3.1 32.2 1.0
C1D A:HEM750 3.1 34.1 1.0
C4B A:HEM750 3.1 31.5 1.0
CHD A:HEM750 3.4 34.7 1.0
CB A:CYS415 3.4 36.6 1.0
CHB A:HEM750 3.4 31.6 1.0
CHA A:HEM750 3.4 34.9 1.0
CHC A:HEM750 3.4 32.4 1.0
CA A:CYS415 4.1 36.0 1.0
C3C A:HEM750 4.2 31.9 1.0
C2C A:HEM750 4.2 32.3 1.0
C2A A:HEM750 4.3 35.0 1.0
C3D A:HEM750 4.3 35.9 1.0
NH1 A:ARG770 4.3 43.2 1.0
C3A A:HEM750 4.3 34.1 1.0
C2D A:HEM750 4.3 34.0 1.0
C2B A:HEM750 4.3 34.2 1.0
C3B A:HEM750 4.3 33.4 1.0
NE1 A:TRP409 4.6 27.5 1.0
CZ A:ARG770 4.7 45.1 1.0
C A:CYS415 5.0 35.3 1.0

Iron binding site 2 out of 2 in 2g6j

Go back to Iron Binding Sites List in 2g6j
Iron binding site 2 out of 2 in the Structure of Rat Nnos (L337N) Heme Domain (4-Aminobiopterin Bound) Complexed with No


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Rat Nnos (L337N) Heme Domain (4-Aminobiopterin Bound) Complexed with No within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe750

b:33.7
occ:1.00
FE B:HEM750 0.0 33.7 1.0
N B:NO910 1.8 37.0 1.0
NC B:HEM750 1.9 26.8 1.0
NA B:HEM750 2.0 32.9 1.0
ND B:HEM750 2.0 30.7 1.0
NB B:HEM750 2.0 31.2 1.0
SG B:CYS415 2.4 36.7 1.0
O B:NO910 2.8 35.3 1.0
C4C B:HEM750 3.0 26.8 1.0
C1C B:HEM750 3.0 28.9 1.0
C1D B:HEM750 3.0 30.6 1.0
C1A B:HEM750 3.0 35.4 1.0
C4A B:HEM750 3.0 36.9 1.0
C4B B:HEM750 3.1 31.8 1.0
C1B B:HEM750 3.1 32.9 1.0
C4D B:HEM750 3.1 32.7 1.0
CHD B:HEM750 3.3 30.8 1.0
CHC B:HEM750 3.4 29.7 1.0
CB B:CYS415 3.4 33.3 1.0
CHA B:HEM750 3.4 33.4 1.0
CHB B:HEM750 3.5 34.0 1.0
NH1 B:ARG771 4.1 38.9 1.0
C3C B:HEM750 4.2 25.7 1.0
C2C B:HEM750 4.2 27.7 1.0
CA B:CYS415 4.2 34.0 1.0
C2A B:HEM750 4.2 37.3 1.0
C3A B:HEM750 4.3 36.3 1.0
C2D B:HEM750 4.3 31.9 1.0
C3D B:HEM750 4.3 34.1 1.0
C2B B:HEM750 4.3 31.0 1.0
C3B B:HEM750 4.3 31.9 1.0
NE1 B:TRP409 4.5 22.5 1.0
CZ B:ARG771 4.5 39.4 1.0
NH2 B:ARG771 4.9 37.7 1.0
N B:GLY417 4.9 35.9 1.0
C B:CYS415 5.0 34.5 1.0

Reference:

H.Li, J.Igarashi, J.Jamal, W.Yang, T.L.Poulos. Structural Studies of Constitutive Nitric Oxide Synthases with Diatomic Ligands Bound. J.Biol.Inorg.Chem. V. 11 753 2006.
ISSN: ISSN 0949-8257
PubMed: 16804678
DOI: 10.1007/S00775-006-0123-8
Page generated: Sat Aug 3 21:48:20 2024

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