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Iron in PDB 2ghd: Conformational Mobility in the Active Site of A Heme Peroxidase

Enzymatic activity of Conformational Mobility in the Active Site of A Heme Peroxidase

All present enzymatic activity of Conformational Mobility in the Active Site of A Heme Peroxidase:
1.11.1.11;

Protein crystallography data

The structure of Conformational Mobility in the Active Site of A Heme Peroxidase, PDB code: 2ghd was solved by S.K.Badyal, M.G.Joyce, K.H.Sharp, E.L.Raven, P.C.E.Moody, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.81 / 1.40
Space group P 42 21 2
Cell size a, b, c (Å), α, β, γ (°) 82.293, 82.293, 75.666, 90.00, 90.00, 90.00
R / Rfree (%) 20.6 / 22.9

Iron Binding Sites:

The binding sites of Iron atom in the Conformational Mobility in the Active Site of A Heme Peroxidase (pdb code 2ghd). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Conformational Mobility in the Active Site of A Heme Peroxidase, PDB code: 2ghd:

Iron binding site 1 out of 1 in 2ghd

Go back to Iron Binding Sites List in 2ghd
Iron binding site 1 out of 1 in the Conformational Mobility in the Active Site of A Heme Peroxidase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Conformational Mobility in the Active Site of A Heme Peroxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
X:Fe251

b:8.9
occ:1.00
FE X:HEM251 0.0 8.9 1.0
C X:CYN9252 2.0 15.5 1.0
NA X:HEM251 2.0 8.3 1.0
NC X:HEM251 2.0 9.1 1.0
ND X:HEM251 2.1 7.7 1.0
NE2 X:HIS163 2.1 13.8 0.5
NB X:HEM251 2.1 10.0 1.0
NE2 X:HIS163 2.1 5.0 0.5
CD2 X:HIS163 3.0 13.0 0.5
C1D X:HEM251 3.0 7.8 1.0
C1A X:HEM251 3.1 8.8 1.0
C1C X:HEM251 3.1 10.0 1.0
C4C X:HEM251 3.1 8.8 1.0
C4A X:HEM251 3.1 9.9 1.0
C4D X:HEM251 3.1 7.5 1.0
C1B X:HEM251 3.1 10.5 1.0
C4B X:HEM251 3.1 11.3 1.0
CE1 X:HIS163 3.1 15.1 0.5
CD2 X:HIS163 3.1 5.4 0.5
CE1 X:HIS163 3.1 5.1 0.5
N X:CYN9252 3.1 19.5 1.0
CHD X:HEM251 3.4 8.5 1.0
CHB X:HEM251 3.4 10.5 1.0
CHA X:HEM251 3.4 8.9 1.0
CHC X:HEM251 3.4 10.5 1.0
CG X:HIS163 4.1 11.8 0.5
ND1 X:HIS163 4.1 14.3 0.5
ND1 X:HIS163 4.2 5.2 0.5
C2D X:HEM251 4.2 7.8 1.0
C3C X:HEM251 4.3 9.0 1.0
C2B X:HEM251 4.3 11.7 1.0
C2C X:HEM251 4.3 9.4 1.0
CG X:HIS163 4.3 6.8 0.5
C2A X:HEM251 4.3 9.1 1.0
C3D X:HEM251 4.3 7.7 1.0
C3A X:HEM251 4.3 9.7 1.0
C3B X:HEM251 4.3 12.0 1.0
O X:HOH9341 4.4 22.9 1.0

Reference:

S.K.Badyal, M.G.Joyce, K.H.Sharp, H.E.Seward, M.Mewies, J.Basran, I.K.Macdonald, P.C.E.Moody, E.L.Raven. Conformational Mobility in the Active Site of A Heme Peroxidase. J.Biol.Chem. V. 281 24512 2006.
ISSN: ISSN 0021-9258
PubMed: 16762924
DOI: 10.1074/JBC.M602602200
Page generated: Sun Dec 13 14:45:18 2020

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