Atomistry » Iron » PDB 2g6o-2grx » 2gok
Atomistry »
  Iron »
    PDB 2g6o-2grx »
      2gok »

Iron in PDB 2gok: Crystal Structure of the Imidazolonepropionase From Agrobacterium Tumefaciens at 1.87 A Resolution

Enzymatic activity of Crystal Structure of the Imidazolonepropionase From Agrobacterium Tumefaciens at 1.87 A Resolution

All present enzymatic activity of Crystal Structure of the Imidazolonepropionase From Agrobacterium Tumefaciens at 1.87 A Resolution:
3.5.2.7;

Protein crystallography data

The structure of Crystal Structure of the Imidazolonepropionase From Agrobacterium Tumefaciens at 1.87 A Resolution, PDB code: 2gok was solved by R.Tyagi, D.Kumaran, S.Swaminathan, S.K.Burley, New York Sgx Researchcenter For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.64 / 1.87
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 140.754, 63.630, 103.716, 90.00, 111.93, 90.00
R / Rfree (%) 20.7 / 23.1

Other elements in 2gok:

The structure of Crystal Structure of the Imidazolonepropionase From Agrobacterium Tumefaciens at 1.87 A Resolution also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms
Chlorine (Cl) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of the Imidazolonepropionase From Agrobacterium Tumefaciens at 1.87 A Resolution (pdb code 2gok). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of the Imidazolonepropionase From Agrobacterium Tumefaciens at 1.87 A Resolution, PDB code: 2gok:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 2gok

Go back to Iron Binding Sites List in 2gok
Iron binding site 1 out of 2 in the Crystal Structure of the Imidazolonepropionase From Agrobacterium Tumefaciens at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of the Imidazolonepropionase From Agrobacterium Tumefaciens at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe500

b:30.4
occ:1.00
NE2 A:HIS86 2.0 20.0 1.0
O A:HOH610 2.1 29.7 1.0
NE2 A:HIS88 2.2 24.7 1.0
OD1 A:ASP331 2.4 21.7 1.0
NE2 A:HIS256 2.4 25.2 1.0
CE1 A:HIS86 3.0 20.1 1.0
CD2 A:HIS86 3.1 22.1 1.0
CD2 A:HIS256 3.1 26.4 1.0
CE1 A:HIS88 3.2 24.9 1.0
CD2 A:HIS88 3.2 24.9 1.0
CG A:ASP331 3.4 21.5 1.0
CE1 A:HIS256 3.5 26.0 1.0
OD2 A:ASP331 3.8 22.6 1.0
NE2 A:HIS279 4.0 27.5 1.0
O A:HOH702 4.1 41.6 1.0
ND1 A:HIS86 4.1 21.2 1.0
CG A:HIS86 4.2 19.0 1.0
CE A:LYS155 4.2 25.0 1.0
ND1 A:HIS88 4.3 25.7 1.0
CG A:HIS88 4.3 23.3 1.0
CG A:HIS256 4.4 26.6 1.0
ND1 A:HIS256 4.5 27.2 1.0
CD A:LYS155 4.5 23.3 1.0
CD1 A:LEU301 4.6 22.4 1.0
CB A:ASP331 4.6 19.8 1.0
O A:HOH742 4.6 45.5 1.0
CE1 A:HIS279 4.7 27.3 1.0
CD2 A:HIS279 4.9 23.4 1.0
CA A:ASP331 4.9 18.2 1.0

Iron binding site 2 out of 2 in 2gok

Go back to Iron Binding Sites List in 2gok
Iron binding site 2 out of 2 in the Crystal Structure of the Imidazolonepropionase From Agrobacterium Tumefaciens at 1.87 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of the Imidazolonepropionase From Agrobacterium Tumefaciens at 1.87 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe501

b:29.6
occ:1.00
O B:HOH581 2.1 31.4 1.0
NE2 B:HIS86 2.1 24.1 1.0
NE2 B:HIS88 2.1 23.8 1.0
OD1 B:ASP331 2.3 22.6 1.0
NE2 B:HIS256 2.4 26.1 1.0
CE1 B:HIS88 3.0 25.3 1.0
CE1 B:HIS86 3.1 25.0 1.0
CD2 B:HIS86 3.1 23.4 1.0
CD2 B:HIS88 3.1 25.1 1.0
CD2 B:HIS256 3.2 27.3 1.0
CG B:ASP331 3.3 25.1 1.0
CE1 B:HIS256 3.4 26.1 1.0
OD2 B:ASP331 3.7 23.7 1.0
NE2 B:HIS279 4.0 26.1 1.0
ND1 B:HIS88 4.2 25.2 1.0
ND1 B:HIS86 4.2 24.0 1.0
CG B:HIS86 4.2 24.3 1.0
CG B:HIS88 4.3 23.5 1.0
CG B:HIS256 4.4 26.6 1.0
CE B:LYS155 4.5 27.0 1.0
ND1 B:HIS256 4.5 28.0 1.0
CD B:LYS155 4.5 28.6 1.0
CB B:ASP331 4.6 22.0 1.0
CD1 B:LEU301 4.6 23.5 1.0
CE1 B:HIS279 4.8 27.4 1.0
CD2 B:HIS279 4.9 24.5 1.0
CA B:ASP331 4.9 20.9 1.0
ND2 B:ASN333 4.9 22.7 1.0

Reference:

R.Tyagi, D.Kumaran, S.K.Burley, S.Swaminathan. X-Ray Structure of Imidazolonepropionase From Agrobacterium Tumefaciens at 1.87 A Resolution. Proteins V. 69 652 2007.
ISSN: ISSN 0887-3585
PubMed: 17640072
DOI: 10.1002/PROT.21559
Page generated: Sun Dec 13 14:45:32 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy