Iron in PDB 2gtl: Lumbricus Erythrocruorin at 3.5A Resolution
Protein crystallography data
The structure of Lumbricus Erythrocruorin at 3.5A Resolution, PDB code: 2gtl
was solved by
W.E.Royer Jr.,
H.Sharma,
K.Strand,
J.E.Knapp,
B.Bhyravbhatla,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
100.00 /
3.50
|
|
Space group
|
P 1
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
176.080,
257.960,
436.530,
89.69,
97.15,
90.98
|
|
R / Rfree (%)
|
28.8 /
29.7
|
Other elements in 2gtl:
The structure of Lumbricus Erythrocruorin at 3.5A Resolution also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Iron atom in the Lumbricus Erythrocruorin at 3.5A Resolution
(pdb code 2gtl). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the
Lumbricus Erythrocruorin at 3.5A Resolution, PDB code: 2gtl:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 12 in 2gtl
Go back to
Iron Binding Sites List in 2gtl
Iron binding site 1 out
of 12 in the Lumbricus Erythrocruorin at 3.5A Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Lumbricus Erythrocruorin at 3.5A Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe160
b:60.6
occ:1.00
|
FE
|
A:HEM160
|
0.0
|
60.6
|
1.0
|
|
C
|
A:CMO161
|
1.8
|
82.2
|
1.0
|
|
NA
|
A:HEM160
|
1.9
|
60.6
|
1.0
|
|
NE2
|
A:HIS101
|
1.9
|
55.7
|
1.0
|
|
NB
|
A:HEM160
|
1.9
|
60.6
|
1.0
|
|
ND
|
A:HEM160
|
2.0
|
60.6
|
1.0
|
|
NC
|
A:HEM160
|
2.0
|
60.6
|
1.0
|
|
CE1
|
A:HIS101
|
2.8
|
55.7
|
1.0
|
|
C4A
|
A:HEM160
|
3.0
|
60.6
|
1.0
|
|
C1A
|
A:HEM160
|
3.0
|
60.6
|
1.0
|
|
C1B
|
A:HEM160
|
3.0
|
60.6
|
1.0
|
|
C4D
|
A:HEM160
|
3.0
|
60.6
|
1.0
|
|
C4B
|
A:HEM160
|
3.0
|
60.6
|
1.0
|
|
O
|
A:CMO161
|
3.0
|
82.2
|
1.0
|
|
C1D
|
A:HEM160
|
3.0
|
60.6
|
1.0
|
|
C1C
|
A:HEM160
|
3.0
|
60.6
|
1.0
|
|
CD2
|
A:HIS101
|
3.1
|
55.7
|
1.0
|
|
C4C
|
A:HEM160
|
3.1
|
60.6
|
1.0
|
|
CHB
|
A:HEM160
|
3.3
|
60.6
|
1.0
|
|
CHA
|
A:HEM160
|
3.4
|
60.6
|
1.0
|
|
CHC
|
A:HEM160
|
3.4
|
60.6
|
1.0
|
|
CHD
|
A:HEM160
|
3.5
|
60.6
|
1.0
|
|
ND1
|
A:HIS101
|
4.0
|
55.7
|
1.0
|
|
CG
|
A:HIS101
|
4.1
|
55.7
|
1.0
|
|
C3A
|
A:HEM160
|
4.2
|
60.6
|
1.0
|
|
C2A
|
A:HEM160
|
4.2
|
60.6
|
1.0
|
|
C2B
|
A:HEM160
|
4.2
|
60.6
|
1.0
|
|
C2D
|
A:HEM160
|
4.2
|
60.6
|
1.0
|
|
C3D
|
A:HEM160
|
4.2
|
60.6
|
1.0
|
|
C3B
|
A:HEM160
|
4.2
|
60.6
|
1.0
|
|
C2C
|
A:HEM160
|
4.3
|
60.6
|
1.0
|
|
C3C
|
A:HEM160
|
4.3
|
60.6
|
1.0
|
|
Iron binding site 2 out
of 12 in 2gtl
Go back to
Iron Binding Sites List in 2gtl
Iron binding site 2 out
of 12 in the Lumbricus Erythrocruorin at 3.5A Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Lumbricus Erythrocruorin at 3.5A Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe160
b:26.1
occ:1.00
|
FE
|
B:HEM160
|
0.0
|
26.1
|
1.0
|
|
C
|
B:CMO161
|
1.7
|
46.6
|
1.0
|
|
ND
|
B:HEM160
|
1.9
|
26.1
|
1.0
|
|
NA
|
B:HEM160
|
1.9
|
26.1
|
1.0
|
|
NC
|
B:HEM160
|
2.0
|
26.1
|
1.0
|
|
NE2
|
B:HIS96
|
2.0
|
60.0
|
1.0
|
|
NB
|
B:HEM160
|
2.0
|
26.1
|
1.0
|
|
O
|
B:CMO161
|
2.9
|
46.6
|
1.0
|
|
CE1
|
B:HIS96
|
2.9
|
60.0
|
1.0
|
|
C4D
|
B:HEM160
|
2.9
|
26.1
|
1.0
|
|
C1D
|
B:HEM160
|
2.9
|
26.1
|
1.0
|
|
C1A
|
B:HEM160
|
3.0
|
26.1
|
1.0
|
|
C4C
|
B:HEM160
|
3.0
|
26.1
|
1.0
|
|
C4A
|
B:HEM160
|
3.0
|
26.1
|
1.0
|
|
C1C
|
B:HEM160
|
3.0
|
26.1
|
1.0
|
|
C4B
|
B:HEM160
|
3.0
|
26.1
|
1.0
|
|
C1B
|
B:HEM160
|
3.0
|
26.1
|
1.0
|
|
CD2
|
B:HIS96
|
3.1
|
60.0
|
1.0
|
|
CHA
|
B:HEM160
|
3.4
|
26.1
|
1.0
|
|
CHD
|
B:HEM160
|
3.4
|
26.1
|
1.0
|
|
CHC
|
B:HEM160
|
3.4
|
26.1
|
1.0
|
|
CHB
|
B:HEM160
|
3.4
|
26.1
|
1.0
|
|
ND1
|
B:HIS96
|
4.1
|
60.0
|
1.0
|
|
C3D
|
B:HEM160
|
4.2
|
26.1
|
1.0
|
|
C2D
|
B:HEM160
|
4.2
|
26.1
|
1.0
|
|
CG
|
B:HIS96
|
4.2
|
60.0
|
1.0
|
|
C2A
|
B:HEM160
|
4.2
|
26.1
|
1.0
|
|
C3A
|
B:HEM160
|
4.2
|
26.1
|
1.0
|
|
C3C
|
B:HEM160
|
4.2
|
26.1
|
1.0
|
|
C2C
|
B:HEM160
|
4.2
|
26.1
|
1.0
|
|
C2B
|
B:HEM160
|
4.3
|
26.1
|
1.0
|
|
C3B
|
B:HEM160
|
4.3
|
26.1
|
1.0
|
|
CG1
|
B:VAL68
|
4.9
|
43.4
|
1.0
|
|
Iron binding site 3 out
of 12 in 2gtl
Go back to
Iron Binding Sites List in 2gtl
Iron binding site 3 out
of 12 in the Lumbricus Erythrocruorin at 3.5A Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Lumbricus Erythrocruorin at 3.5A Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe160
b:39.2
occ:1.00
|
FE
|
C:HEM160
|
0.0
|
39.2
|
1.0
|
|
C
|
C:CMO161
|
1.8
|
46.5
|
1.0
|
|
ND
|
C:HEM160
|
1.9
|
39.2
|
1.0
|
|
NA
|
C:HEM160
|
2.0
|
39.2
|
1.0
|
|
NE2
|
C:HIS102
|
2.0
|
39.4
|
1.0
|
|
NB
|
C:HEM160
|
2.0
|
39.2
|
1.0
|
|
NC
|
C:HEM160
|
2.0
|
39.2
|
1.0
|
|
CE1
|
C:HIS102
|
2.7
|
39.4
|
1.0
|
|
C4D
|
C:HEM160
|
3.0
|
39.2
|
1.0
|
|
C1A
|
C:HEM160
|
3.0
|
39.2
|
1.0
|
|
C4A
|
C:HEM160
|
3.0
|
39.2
|
1.0
|
|
C1D
|
C:HEM160
|
3.0
|
39.2
|
1.0
|
|
C1B
|
C:HEM160
|
3.0
|
39.2
|
1.0
|
|
C4B
|
C:HEM160
|
3.0
|
39.2
|
1.0
|
|
C1C
|
C:HEM160
|
3.0
|
39.2
|
1.0
|
|
O
|
C:CMO161
|
3.0
|
46.5
|
1.0
|
|
C4C
|
C:HEM160
|
3.0
|
39.2
|
1.0
|
|
CD2
|
C:HIS102
|
3.2
|
39.4
|
1.0
|
|
CHA
|
C:HEM160
|
3.4
|
39.2
|
1.0
|
|
CHC
|
C:HEM160
|
3.4
|
39.2
|
1.0
|
|
CHB
|
C:HEM160
|
3.4
|
39.2
|
1.0
|
|
CHD
|
C:HEM160
|
3.4
|
39.2
|
1.0
|
|
ND1
|
C:HIS102
|
3.9
|
39.4
|
1.0
|
|
CG
|
C:HIS102
|
4.2
|
39.4
|
1.0
|
|
C3D
|
C:HEM160
|
4.2
|
39.2
|
1.0
|
|
C2D
|
C:HEM160
|
4.2
|
39.2
|
1.0
|
|
C2A
|
C:HEM160
|
4.2
|
39.2
|
1.0
|
|
C3A
|
C:HEM160
|
4.2
|
39.2
|
1.0
|
|
C2B
|
C:HEM160
|
4.3
|
39.2
|
1.0
|
|
C3C
|
C:HEM160
|
4.3
|
39.2
|
1.0
|
|
C2C
|
C:HEM160
|
4.3
|
39.2
|
1.0
|
|
C3B
|
C:HEM160
|
4.3
|
39.2
|
1.0
|
|
Iron binding site 4 out
of 12 in 2gtl
Go back to
Iron Binding Sites List in 2gtl
Iron binding site 4 out
of 12 in the Lumbricus Erythrocruorin at 3.5A Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Lumbricus Erythrocruorin at 3.5A Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe160
b:38.7
occ:1.00
|
FE
|
D:HEM160
|
0.0
|
38.7
|
1.0
|
|
C
|
D:CMO161
|
1.8
|
74.4
|
1.0
|
|
ND
|
D:HEM160
|
1.9
|
38.7
|
1.0
|
|
NC
|
D:HEM160
|
1.9
|
38.7
|
1.0
|
|
NA
|
D:HEM160
|
2.0
|
38.7
|
1.0
|
|
NB
|
D:HEM160
|
2.0
|
38.7
|
1.0
|
|
NE2
|
D:HIS101
|
2.0
|
81.9
|
1.0
|
|
CE1
|
D:HIS101
|
2.8
|
81.9
|
1.0
|
|
C4D
|
D:HEM160
|
3.0
|
38.7
|
1.0
|
|
C1D
|
D:HEM160
|
3.0
|
38.7
|
1.0
|
|
O
|
D:CMO161
|
3.0
|
74.4
|
1.0
|
|
C1C
|
D:HEM160
|
3.0
|
38.7
|
1.0
|
|
C4C
|
D:HEM160
|
3.0
|
38.7
|
1.0
|
|
C1A
|
D:HEM160
|
3.0
|
38.7
|
1.0
|
|
C4B
|
D:HEM160
|
3.0
|
38.7
|
1.0
|
|
C4A
|
D:HEM160
|
3.0
|
38.7
|
1.0
|
|
C1B
|
D:HEM160
|
3.1
|
38.7
|
1.0
|
|
CD2
|
D:HIS101
|
3.2
|
81.9
|
1.0
|
|
CHA
|
D:HEM160
|
3.4
|
38.7
|
1.0
|
|
CHD
|
D:HEM160
|
3.4
|
38.7
|
1.0
|
|
CHC
|
D:HEM160
|
3.4
|
38.7
|
1.0
|
|
CHB
|
D:HEM160
|
3.4
|
38.7
|
1.0
|
|
ND1
|
D:HIS101
|
4.0
|
81.9
|
1.0
|
|
C3D
|
D:HEM160
|
4.2
|
38.7
|
1.0
|
|
C2D
|
D:HEM160
|
4.2
|
38.7
|
1.0
|
|
C3C
|
D:HEM160
|
4.2
|
38.7
|
1.0
|
|
CG
|
D:HIS101
|
4.2
|
81.9
|
1.0
|
|
C2C
|
D:HEM160
|
4.2
|
38.7
|
1.0
|
|
C2A
|
D:HEM160
|
4.2
|
38.7
|
1.0
|
|
C3A
|
D:HEM160
|
4.3
|
38.7
|
1.0
|
|
C3B
|
D:HEM160
|
4.3
|
38.7
|
1.0
|
|
C2B
|
D:HEM160
|
4.3
|
38.7
|
1.0
|
|
CG1
|
D:VAL73
|
4.9
|
41.0
|
1.0
|
|
CG2
|
D:VAL73
|
5.0
|
41.0
|
1.0
|
|
Iron binding site 5 out
of 12 in 2gtl
Go back to
Iron Binding Sites List in 2gtl
Iron binding site 5 out
of 12 in the Lumbricus Erythrocruorin at 3.5A Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Lumbricus Erythrocruorin at 3.5A Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe160
b:71.4
occ:1.00
|
FE
|
E:HEM160
|
0.0
|
71.4
|
1.0
|
|
C
|
E:CMO161
|
1.8
|
54.5
|
1.0
|
|
NE2
|
E:HIS101
|
1.9
|
56.4
|
1.0
|
|
ND
|
E:HEM160
|
1.9
|
71.4
|
1.0
|
|
NA
|
E:HEM160
|
2.0
|
71.4
|
1.0
|
|
NC
|
E:HEM160
|
2.0
|
71.4
|
1.0
|
|
NB
|
E:HEM160
|
2.0
|
71.4
|
1.0
|
|
CE1
|
E:HIS101
|
2.8
|
56.4
|
1.0
|
|
C4D
|
E:HEM160
|
2.9
|
71.4
|
1.0
|
|
C1D
|
E:HEM160
|
3.0
|
71.4
|
1.0
|
|
C1A
|
E:HEM160
|
3.0
|
71.4
|
1.0
|
|
C1C
|
E:HEM160
|
3.0
|
71.4
|
1.0
|
|
CD2
|
E:HIS101
|
3.0
|
56.4
|
1.0
|
|
C4C
|
E:HEM160
|
3.0
|
71.4
|
1.0
|
|
C4A
|
E:HEM160
|
3.0
|
71.4
|
1.0
|
|
O
|
E:CMO161
|
3.1
|
54.5
|
1.0
|
|
C4B
|
E:HEM160
|
3.1
|
71.4
|
1.0
|
|
C1B
|
E:HEM160
|
3.1
|
71.4
|
1.0
|
|
CHA
|
E:HEM160
|
3.3
|
71.4
|
1.0
|
|
CHD
|
E:HEM160
|
3.4
|
71.4
|
1.0
|
|
CHC
|
E:HEM160
|
3.4
|
71.4
|
1.0
|
|
CHB
|
E:HEM160
|
3.4
|
71.4
|
1.0
|
|
ND1
|
E:HIS101
|
4.0
|
56.4
|
1.0
|
|
CG
|
E:HIS101
|
4.1
|
56.4
|
1.0
|
|
C2D
|
E:HEM160
|
4.1
|
71.4
|
1.0
|
|
C3D
|
E:HEM160
|
4.2
|
71.4
|
1.0
|
|
C3A
|
E:HEM160
|
4.2
|
71.4
|
1.0
|
|
C2A
|
E:HEM160
|
4.2
|
71.4
|
1.0
|
|
C2C
|
E:HEM160
|
4.2
|
71.4
|
1.0
|
|
C3C
|
E:HEM160
|
4.2
|
71.4
|
1.0
|
|
C2B
|
E:HEM160
|
4.3
|
71.4
|
1.0
|
|
C3B
|
E:HEM160
|
4.3
|
71.4
|
1.0
|
|
Iron binding site 6 out
of 12 in 2gtl
Go back to
Iron Binding Sites List in 2gtl
Iron binding site 6 out
of 12 in the Lumbricus Erythrocruorin at 3.5A Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Lumbricus Erythrocruorin at 3.5A Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe160
b:38.0
occ:1.00
|
FE
|
F:HEM160
|
0.0
|
38.0
|
1.0
|
|
C
|
F:CMO161
|
1.8
|
64.9
|
1.0
|
|
NA
|
F:HEM160
|
1.9
|
38.0
|
1.0
|
|
NE2
|
F:HIS96
|
1.9
|
54.4
|
1.0
|
|
ND
|
F:HEM160
|
1.9
|
38.0
|
1.0
|
|
NC
|
F:HEM160
|
2.0
|
38.0
|
1.0
|
|
NB
|
F:HEM160
|
2.0
|
38.0
|
1.0
|
|
CE1
|
F:HIS96
|
2.8
|
54.4
|
1.0
|
|
C1A
|
F:HEM160
|
2.9
|
38.0
|
1.0
|
|
C4D
|
F:HEM160
|
3.0
|
38.0
|
1.0
|
|
O
|
F:CMO161
|
3.0
|
64.9
|
1.0
|
|
C4A
|
F:HEM160
|
3.0
|
38.0
|
1.0
|
|
C1D
|
F:HEM160
|
3.0
|
38.0
|
1.0
|
|
CD2
|
F:HIS96
|
3.0
|
54.4
|
1.0
|
|
C4C
|
F:HEM160
|
3.0
|
38.0
|
1.0
|
|
C1B
|
F:HEM160
|
3.0
|
38.0
|
1.0
|
|
C1C
|
F:HEM160
|
3.0
|
38.0
|
1.0
|
|
C4B
|
F:HEM160
|
3.0
|
38.0
|
1.0
|
|
CHA
|
F:HEM160
|
3.4
|
38.0
|
1.0
|
|
CHB
|
F:HEM160
|
3.4
|
38.0
|
1.0
|
|
CHD
|
F:HEM160
|
3.4
|
38.0
|
1.0
|
|
CHC
|
F:HEM160
|
3.4
|
38.0
|
1.0
|
|
ND1
|
F:HIS96
|
4.0
|
54.4
|
1.0
|
|
CG
|
F:HIS96
|
4.1
|
54.4
|
1.0
|
|
C3D
|
F:HEM160
|
4.2
|
38.0
|
1.0
|
|
C2A
|
F:HEM160
|
4.2
|
38.0
|
1.0
|
|
C3A
|
F:HEM160
|
4.2
|
38.0
|
1.0
|
|
C2D
|
F:HEM160
|
4.2
|
38.0
|
1.0
|
|
C2C
|
F:HEM160
|
4.3
|
38.0
|
1.0
|
|
C3C
|
F:HEM160
|
4.3
|
38.0
|
1.0
|
|
C2B
|
F:HEM160
|
4.3
|
38.0
|
1.0
|
|
C3B
|
F:HEM160
|
4.3
|
38.0
|
1.0
|
|
CG1
|
F:VAL68
|
4.9
|
30.4
|
1.0
|
|
Iron binding site 7 out
of 12 in 2gtl
Go back to
Iron Binding Sites List in 2gtl
Iron binding site 7 out
of 12 in the Lumbricus Erythrocruorin at 3.5A Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Lumbricus Erythrocruorin at 3.5A Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe160
b:66.3
occ:1.00
|
FE
|
G:HEM160
|
0.0
|
66.3
|
1.0
|
|
C
|
G:CMO161
|
1.8
|
38.4
|
1.0
|
|
NB
|
G:HEM160
|
2.0
|
66.3
|
1.0
|
|
ND
|
G:HEM160
|
2.0
|
66.3
|
1.0
|
|
NA
|
G:HEM160
|
2.0
|
66.3
|
1.0
|
|
NC
|
G:HEM160
|
2.0
|
66.3
|
1.0
|
|
NE2
|
G:HIS102
|
2.0
|
42.1
|
1.0
|
|
CE1
|
G:HIS102
|
2.7
|
42.1
|
1.0
|
|
C1B
|
G:HEM160
|
3.0
|
66.3
|
1.0
|
|
C4D
|
G:HEM160
|
3.0
|
66.3
|
1.0
|
|
C4B
|
G:HEM160
|
3.0
|
66.3
|
1.0
|
|
C4A
|
G:HEM160
|
3.0
|
66.3
|
1.0
|
|
C1A
|
G:HEM160
|
3.0
|
66.3
|
1.0
|
|
C1C
|
G:HEM160
|
3.0
|
66.3
|
1.0
|
|
O
|
G:CMO161
|
3.0
|
38.4
|
1.0
|
|
C1D
|
G:HEM160
|
3.0
|
66.3
|
1.0
|
|
C4C
|
G:HEM160
|
3.0
|
66.3
|
1.0
|
|
CD2
|
G:HIS102
|
3.2
|
42.1
|
1.0
|
|
CHB
|
G:HEM160
|
3.4
|
66.3
|
1.0
|
|
CHA
|
G:HEM160
|
3.4
|
66.3
|
1.0
|
|
CHC
|
G:HEM160
|
3.4
|
66.3
|
1.0
|
|
CHD
|
G:HEM160
|
3.4
|
66.3
|
1.0
|
|
ND1
|
G:HIS102
|
4.0
|
42.1
|
1.0
|
|
CG
|
G:HIS102
|
4.2
|
42.1
|
1.0
|
|
C2B
|
G:HEM160
|
4.2
|
66.3
|
1.0
|
|
C3B
|
G:HEM160
|
4.2
|
66.3
|
1.0
|
|
C3A
|
G:HEM160
|
4.2
|
66.3
|
1.0
|
|
C2C
|
G:HEM160
|
4.2
|
66.3
|
1.0
|
|
C2A
|
G:HEM160
|
4.2
|
66.3
|
1.0
|
|
C2D
|
G:HEM160
|
4.3
|
66.3
|
1.0
|
|
C3D
|
G:HEM160
|
4.3
|
66.3
|
1.0
|
|
C3C
|
G:HEM160
|
4.3
|
66.3
|
1.0
|
|
Iron binding site 8 out
of 12 in 2gtl
Go back to
Iron Binding Sites List in 2gtl
Iron binding site 8 out
of 12 in the Lumbricus Erythrocruorin at 3.5A Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Lumbricus Erythrocruorin at 3.5A Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe160
b:52.5
occ:1.00
|
FE
|
H:HEM160
|
0.0
|
52.5
|
1.0
|
|
C
|
H:CMO161
|
1.8
|
68.9
|
1.0
|
|
ND
|
H:HEM160
|
1.9
|
52.5
|
1.0
|
|
NA
|
H:HEM160
|
2.0
|
52.5
|
1.0
|
|
NC
|
H:HEM160
|
2.0
|
52.5
|
1.0
|
|
NB
|
H:HEM160
|
2.0
|
52.5
|
1.0
|
|
NE2
|
H:HIS101
|
2.0
|
80.9
|
1.0
|
|
CE1
|
H:HIS101
|
2.7
|
80.9
|
1.0
|
|
C4D
|
H:HEM160
|
3.0
|
52.5
|
1.0
|
|
C1D
|
H:HEM160
|
3.0
|
52.5
|
1.0
|
|
C1A
|
H:HEM160
|
3.0
|
52.5
|
1.0
|
|
C1C
|
H:HEM160
|
3.0
|
52.5
|
1.0
|
|
C4A
|
H:HEM160
|
3.0
|
52.5
|
1.0
|
|
C4C
|
H:HEM160
|
3.0
|
52.5
|
1.0
|
|
C4B
|
H:HEM160
|
3.0
|
52.5
|
1.0
|
|
O
|
H:CMO161
|
3.0
|
68.9
|
1.0
|
|
C1B
|
H:HEM160
|
3.0
|
52.5
|
1.0
|
|
CD2
|
H:HIS101
|
3.2
|
80.9
|
1.0
|
|
CHA
|
H:HEM160
|
3.4
|
52.5
|
1.0
|
|
CHD
|
H:HEM160
|
3.4
|
52.5
|
1.0
|
|
CHC
|
H:HEM160
|
3.4
|
52.5
|
1.0
|
|
CHB
|
H:HEM160
|
3.4
|
52.5
|
1.0
|
|
ND1
|
H:HIS101
|
3.9
|
80.9
|
1.0
|
|
CG
|
H:HIS101
|
4.2
|
80.9
|
1.0
|
|
C3D
|
H:HEM160
|
4.2
|
52.5
|
1.0
|
|
C2D
|
H:HEM160
|
4.2
|
52.5
|
1.0
|
|
C3C
|
H:HEM160
|
4.2
|
52.5
|
1.0
|
|
C2A
|
H:HEM160
|
4.2
|
52.5
|
1.0
|
|
C2C
|
H:HEM160
|
4.2
|
52.5
|
1.0
|
|
C3A
|
H:HEM160
|
4.2
|
52.5
|
1.0
|
|
C3B
|
H:HEM160
|
4.3
|
52.5
|
1.0
|
|
C2B
|
H:HEM160
|
4.3
|
52.5
|
1.0
|
|
CG1
|
H:VAL73
|
5.0
|
57.3
|
1.0
|
|
Iron binding site 9 out
of 12 in 2gtl
Go back to
Iron Binding Sites List in 2gtl
Iron binding site 9 out
of 12 in the Lumbricus Erythrocruorin at 3.5A Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Lumbricus Erythrocruorin at 3.5A Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe160
b:64.3
occ:1.00
|
FE
|
I:HEM160
|
0.0
|
64.3
|
1.0
|
|
C
|
I:CMO161
|
1.8
|
80.6
|
1.0
|
|
ND
|
I:HEM160
|
1.9
|
64.3
|
1.0
|
|
NA
|
I:HEM160
|
1.9
|
64.3
|
1.0
|
|
NE2
|
I:HIS101
|
2.0
|
52.9
|
1.0
|
|
NC
|
I:HEM160
|
2.0
|
64.3
|
1.0
|
|
NB
|
I:HEM160
|
2.0
|
64.3
|
1.0
|
|
CE1
|
I:HIS101
|
2.8
|
52.9
|
1.0
|
|
C1D
|
I:HEM160
|
3.0
|
64.3
|
1.0
|
|
C4D
|
I:HEM160
|
3.0
|
64.3
|
1.0
|
|
C1A
|
I:HEM160
|
3.0
|
64.3
|
1.0
|
|
C4A
|
I:HEM160
|
3.0
|
64.3
|
1.0
|
|
O
|
I:CMO161
|
3.0
|
80.6
|
1.0
|
|
C4C
|
I:HEM160
|
3.0
|
64.3
|
1.0
|
|
C1C
|
I:HEM160
|
3.0
|
64.3
|
1.0
|
|
C1B
|
I:HEM160
|
3.0
|
64.3
|
1.0
|
|
C4B
|
I:HEM160
|
3.1
|
64.3
|
1.0
|
|
CD2
|
I:HIS101
|
3.1
|
52.9
|
1.0
|
|
CHA
|
I:HEM160
|
3.4
|
64.3
|
1.0
|
|
CHD
|
I:HEM160
|
3.4
|
64.3
|
1.0
|
|
CHB
|
I:HEM160
|
3.4
|
64.3
|
1.0
|
|
CHC
|
I:HEM160
|
3.4
|
64.3
|
1.0
|
|
ND1
|
I:HIS101
|
4.0
|
52.9
|
1.0
|
|
CG
|
I:HIS101
|
4.2
|
52.9
|
1.0
|
|
C2D
|
I:HEM160
|
4.2
|
64.3
|
1.0
|
|
C3D
|
I:HEM160
|
4.2
|
64.3
|
1.0
|
|
C3A
|
I:HEM160
|
4.2
|
64.3
|
1.0
|
|
C2A
|
I:HEM160
|
4.2
|
64.3
|
1.0
|
|
C2C
|
I:HEM160
|
4.2
|
64.3
|
1.0
|
|
C3C
|
I:HEM160
|
4.2
|
64.3
|
1.0
|
|
C2B
|
I:HEM160
|
4.3
|
64.3
|
1.0
|
|
C3B
|
I:HEM160
|
4.3
|
64.3
|
1.0
|
|
Iron binding site 10 out
of 12 in 2gtl
Go back to
Iron Binding Sites List in 2gtl
Iron binding site 10 out
of 12 in the Lumbricus Erythrocruorin at 3.5A Resolution
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Lumbricus Erythrocruorin at 3.5A Resolution within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Fe160
b:54.3
occ:1.00
|
FE
|
J:HEM160
|
0.0
|
54.3
|
1.0
|
|
C
|
J:CMO161
|
1.8
|
70.0
|
1.0
|
|
NE2
|
J:HIS96
|
1.9
|
71.2
|
1.0
|
|
NB
|
J:HEM160
|
1.9
|
54.3
|
1.0
|
|
NA
|
J:HEM160
|
1.9
|
54.3
|
1.0
|
|
NC
|
J:HEM160
|
2.0
|
54.3
|
1.0
|
|
ND
|
J:HEM160
|
2.0
|
54.3
|
1.0
|
|
CE1
|
J:HIS96
|
2.9
|
71.2
|
1.0
|
|
O
|
J:CMO161
|
3.0
|
70.0
|
1.0
|
|
C1B
|
J:HEM160
|
3.0
|
54.3
|
1.0
|
|
C1A
|
J:HEM160
|
3.0
|
54.3
|
1.0
|
|
C4B
|
J:HEM160
|
3.0
|
54.3
|
1.0
|
|
C1C
|
J:HEM160
|
3.0
|
54.3
|
1.0
|
|
C4D
|
J:HEM160
|
3.0
|
54.3
|
1.0
|
|
C4A
|
J:HEM160
|
3.0
|
54.3
|
1.0
|
|
C1D
|
J:HEM160
|
3.0
|
54.3
|
1.0
|
|
C4C
|
J:HEM160
|
3.0
|
54.3
|
1.0
|
|
CD2
|
J:HIS96
|
3.0
|
71.2
|
1.0
|
|
CHB
|
J:HEM160
|
3.4
|
54.3
|
1.0
|
|
CHC
|
J:HEM160
|
3.4
|
54.3
|
1.0
|
|
CHA
|
J:HEM160
|
3.4
|
54.3
|
1.0
|
|
CHD
|
J:HEM160
|
3.4
|
54.3
|
1.0
|
|
ND1
|
J:HIS96
|
4.0
|
71.2
|
1.0
|
|
CG
|
J:HIS96
|
4.1
|
71.2
|
1.0
|
|
C3A
|
J:HEM160
|
4.2
|
54.3
|
1.0
|
|
C2A
|
J:HEM160
|
4.2
|
54.3
|
1.0
|
|
C2B
|
J:HEM160
|
4.2
|
54.3
|
1.0
|
|
C3B
|
J:HEM160
|
4.2
|
54.3
|
1.0
|
|
C3D
|
J:HEM160
|
4.2
|
54.3
|
1.0
|
|
C2C
|
J:HEM160
|
4.2
|
54.3
|
1.0
|
|
C3C
|
J:HEM160
|
4.2
|
54.3
|
1.0
|
|
C2D
|
J:HEM160
|
4.3
|
54.3
|
1.0
|
|
CG1
|
J:VAL68
|
4.9
|
31.0
|
1.0
|
|
Reference:
W.E.Royer Jr.,
H.Sharma,
K.Strand,
J.E.Knapp,
B.Bhyravbhatla.
Lumbricus Erythrocruorin at 3.5 A Resolution: Architecture of A Megadalton Respiratory Complex. Structure V. 14 1167 2006.
ISSN: ISSN 0969-2126
PubMed: 16843898
DOI: 10.1016/J.STR.2006.05.011
Page generated: Sat Aug 3 22:48:57 2024
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