Atomistry » Iron » PDB 2grz-2hk6 » 2h0v
Atomistry »
  Iron »
    PDB 2grz-2hk6 »
      2h0v »

Iron in PDB 2h0v: Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution

Enzymatic activity of Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution

All present enzymatic activity of Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution:
1.13.11.24;

Protein crystallography data

The structure of Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution, PDB code: 2h0v was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.78 / 2.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 97.416, 128.659, 133.889, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 20.4

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution (pdb code 2h0v). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution, PDB code: 2h0v:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 2h0v

Go back to Iron Binding Sites List in 2h0v
Iron binding site 1 out of 4 in the Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe500

b:43.3
occ:1.00
 OE1 A:GLU69 2.1 44.1 1.0
NE2 A:HIS103 2.2 45.8 1.0
NE2 A:HIS64 2.2 43.0 1.0
O2 A:EDO502 2.2 42.1 1.0
NE2 A:HIS62 2.3 44.8 1.0
O1 A:EDO502 2.8 47.4 1.0
C1 A:EDO502 2.8 46.1 1.0
C2 A:EDO502 3.0 45.7 1.0
CD A:GLU69 3.0 44.4 1.0
CE1 A:HIS103 3.1 40.0 1.0
CE1 A:HIS64 3.1 47.2 1.0
CD2 A:HIS64 3.1 45.4 1.0
CD2 A:HIS103 3.2 44.8 1.0
CD2 A:HIS62 3.2 29.5 1.0
OE2 A:GLU69 3.3 40.6 1.0
CE1 A:HIS62 3.3 40.6 1.0
ND1 A:HIS103 4.2 32.7 1.0
ND1 A:HIS64 4.2 42.0 1.0
CG A:HIS103 4.3 38.9 1.0
CG A:HIS64 4.3 41.3 1.0
ND1 A:HIS62 4.4 40.5 1.0
CG A:HIS62 4.4 41.8 1.0
CG A:GLU69 4.5 46.1 1.0
CB A:GLU69 4.9 43.6 1.0

Iron binding site 2 out of 4 in 2h0v

Go back to Iron Binding Sites List in 2h0v
Iron binding site 2 out of 4 in the Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:40.6
occ:1.00
 O1 A:TLA503 1.8 48.7 1.0
OE1 A:GLU241 2.0 51.2 1.0
NE2 A:HIS275 2.1 41.0 1.0
NE2 A:HIS236 2.1 38.7 1.0
O2 A:TLA503 2.1 43.0 1.0
NE2 A:HIS234 2.3 31.2 1.0
C1 A:TLA503 2.6 47.0 1.0
C2 A:TLA503 2.9 47.5 1.0
CD A:GLU241 2.9 38.8 1.0
CE1 A:HIS275 3.0 41.0 1.0
CE1 A:HIS236 3.1 41.7 1.0
CD2 A:HIS236 3.1 38.1 1.0
CD2 A:HIS275 3.1 38.0 1.0
CD2 A:HIS234 3.2 37.3 1.0
OE2 A:GLU241 3.2 42.9 1.0
CE1 A:HIS234 3.3 41.6 1.0
O11 A:TLA503 3.8 47.3 1.0
C3 A:TLA503 4.1 44.1 1.0
O3 A:TLA503 4.1 53.5 1.0
ND1 A:HIS275 4.2 37.6 1.0
ND1 A:HIS236 4.2 32.3 1.0
CG A:HIS275 4.2 38.0 1.0
CG A:HIS236 4.2 40.1 1.0
CG A:GLU241 4.2 37.4 1.0
CG A:HIS234 4.4 38.1 1.0
ND1 A:HIS234 4.4 36.3 1.0
CZ A:PHE243 4.5 50.4 1.0
CB A:GLU241 4.7 35.5 1.0

Iron binding site 3 out of 4 in 2h0v

Go back to Iron Binding Sites List in 2h0v
Iron binding site 3 out of 4 in the Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe500

b:44.7
occ:1.00
 OE1 B:GLU69 2.0 44.9 1.0
NE2 B:HIS103 2.1 43.3 1.0
O2 B:EDO502 2.1 42.6 1.0
NE2 B:HIS64 2.2 42.0 1.0
O1 B:EDO502 2.2 44.7 1.0
NE2 B:HIS62 2.2 44.5 1.0
C2 B:EDO502 3.0 47.8 1.0
C1 B:EDO502 3.0 46.4 1.0
CD B:GLU69 3.0 45.1 1.0
CE1 B:HIS103 3.0 39.5 1.0
CE1 B:HIS64 3.1 47.8 1.0
CD2 B:HIS103 3.1 37.3 1.0
CD2 B:HIS64 3.2 42.9 1.0
CD2 B:HIS62 3.2 38.4 1.0
CE1 B:HIS62 3.2 46.7 1.0
OE2 B:GLU69 3.4 46.9 1.0
ND1 B:HIS103 4.2 33.8 1.0
ND1 B:HIS64 4.2 39.7 1.0
CG B:HIS103 4.2 42.6 1.0
ND1 B:HIS62 4.3 41.4 1.0
CG B:HIS64 4.3 39.7 1.0
CG B:HIS62 4.3 42.2 1.0
CG B:GLU69 4.4 46.1 1.0
CB B:GLU69 4.8 44.4 1.0

Iron binding site 4 out of 4 in 2h0v

Go back to Iron Binding Sites List in 2h0v
Iron binding site 4 out of 4 in the Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe501

b:42.7
occ:1.00
 O1 B:TLA503 2.0 51.3 1.0
OE1 B:GLU241 2.0 41.4 1.0
O2 B:TLA503 2.0 41.1 1.0
NE2 B:HIS236 2.1 44.6 1.0
NE2 B:HIS275 2.1 36.7 1.0
NE2 B:HIS234 2.3 49.6 1.0
C1 B:TLA503 2.7 49.2 1.0
C2 B:TLA503 2.9 46.2 1.0
CD B:GLU241 2.9 41.5 1.0
CE1 B:HIS275 3.0 34.6 1.0
CE1 B:HIS236 3.1 49.6 1.0
CD2 B:HIS236 3.1 44.3 1.0
CD2 B:HIS275 3.2 30.4 1.0
CE1 B:HIS234 3.2 49.5 1.0
OE2 B:GLU241 3.3 43.8 1.0
CD2 B:HIS234 3.3 41.1 1.0
O3 B:TLA503 3.8 49.5 1.0
O11 B:TLA503 4.0 46.0 1.0
C3 B:TLA503 4.0 39.2 1.0
ND1 B:HIS275 4.1 35.5 1.0
ND1 B:HIS236 4.2 44.4 1.0
CG B:HIS236 4.2 44.4 1.0
CG B:GLU241 4.2 41.3 1.0
CG B:HIS275 4.2 40.0 1.0
ND1 B:HIS234 4.3 39.5 1.0
CG B:HIS234 4.4 41.2 1.0
CZ B:PHE243 4.5 50.4 1.0
CB B:GLU241 4.7 42.5 1.0
CE1 B:PHE298 4.8 69.3 1.0
C4 B:TLA503 4.9 47.5 1.0
O4 B:TLA503 4.9 45.2 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Aug 3 22:48:56 2024

Last articles

Al in 6WWK
Al in 6WWG
Al in 6S3M
Al in 6S9E
Al in 6S3H
Al in 6NJP
Al in 6NJO
Al in 6QP0
Al in 6L3G
Al in 6K7M
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy