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Iron in PDB 2h0v: Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution

Enzymatic activity of Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution

All present enzymatic activity of Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution:
1.13.11.24;

Protein crystallography data

The structure of Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution, PDB code: 2h0v was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.78 / 2.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 97.416, 128.659, 133.889, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 20.4

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution (pdb code 2h0v). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution, PDB code: 2h0v:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 2h0v

Go back to Iron Binding Sites List in 2h0v
Iron binding site 1 out of 4 in the Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe500

b:43.3
occ:1.00
 OE1 A:GLU69 2.1 44.1 1.0
NE2 A:HIS103 2.2 45.8 1.0
NE2 A:HIS64 2.2 43.0 1.0
O2 A:EDO502 2.2 42.1 1.0
NE2 A:HIS62 2.3 44.8 1.0
O1 A:EDO502 2.8 47.4 1.0
C1 A:EDO502 2.8 46.1 1.0
C2 A:EDO502 3.0 45.7 1.0
CD A:GLU69 3.0 44.4 1.0
CE1 A:HIS103 3.1 40.0 1.0
CE1 A:HIS64 3.1 47.2 1.0
CD2 A:HIS64 3.1 45.4 1.0
CD2 A:HIS103 3.2 44.8 1.0
CD2 A:HIS62 3.2 29.5 1.0
OE2 A:GLU69 3.3 40.6 1.0
CE1 A:HIS62 3.3 40.6 1.0
ND1 A:HIS103 4.2 32.7 1.0
ND1 A:HIS64 4.2 42.0 1.0
CG A:HIS103 4.3 38.9 1.0
CG A:HIS64 4.3 41.3 1.0
ND1 A:HIS62 4.4 40.5 1.0
CG A:HIS62 4.4 41.8 1.0
CG A:GLU69 4.5 46.1 1.0
CB A:GLU69 4.9 43.6 1.0

Iron binding site 2 out of 4 in 2h0v

Go back to Iron Binding Sites List in 2h0v
Iron binding site 2 out of 4 in the Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:40.6
occ:1.00
 O1 A:TLA503 1.8 48.7 1.0
OE1 A:GLU241 2.0 51.2 1.0
NE2 A:HIS275 2.1 41.0 1.0
NE2 A:HIS236 2.1 38.7 1.0
O2 A:TLA503 2.1 43.0 1.0
NE2 A:HIS234 2.3 31.2 1.0
C1 A:TLA503 2.6 47.0 1.0
C2 A:TLA503 2.9 47.5 1.0
CD A:GLU241 2.9 38.8 1.0
CE1 A:HIS275 3.0 41.0 1.0
CE1 A:HIS236 3.1 41.7 1.0
CD2 A:HIS236 3.1 38.1 1.0
CD2 A:HIS275 3.1 38.0 1.0
CD2 A:HIS234 3.2 37.3 1.0
OE2 A:GLU241 3.2 42.9 1.0
CE1 A:HIS234 3.3 41.6 1.0
O11 A:TLA503 3.8 47.3 1.0
C3 A:TLA503 4.1 44.1 1.0
O3 A:TLA503 4.1 53.5 1.0
ND1 A:HIS275 4.2 37.6 1.0
ND1 A:HIS236 4.2 32.3 1.0
CG A:HIS275 4.2 38.0 1.0
CG A:HIS236 4.2 40.1 1.0
CG A:GLU241 4.2 37.4 1.0
CG A:HIS234 4.4 38.1 1.0
ND1 A:HIS234 4.4 36.3 1.0
CZ A:PHE243 4.5 50.4 1.0
CB A:GLU241 4.7 35.5 1.0

Iron binding site 3 out of 4 in 2h0v

Go back to Iron Binding Sites List in 2h0v
Iron binding site 3 out of 4 in the Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe500

b:44.7
occ:1.00
 OE1 B:GLU69 2.0 44.9 1.0
NE2 B:HIS103 2.1 43.3 1.0
O2 B:EDO502 2.1 42.6 1.0
NE2 B:HIS64 2.2 42.0 1.0
O1 B:EDO502 2.2 44.7 1.0
NE2 B:HIS62 2.2 44.5 1.0
C2 B:EDO502 3.0 47.8 1.0
C1 B:EDO502 3.0 46.4 1.0
CD B:GLU69 3.0 45.1 1.0
CE1 B:HIS103 3.0 39.5 1.0
CE1 B:HIS64 3.1 47.8 1.0
CD2 B:HIS103 3.1 37.3 1.0
CD2 B:HIS64 3.2 42.9 1.0
CD2 B:HIS62 3.2 38.4 1.0
CE1 B:HIS62 3.2 46.7 1.0
OE2 B:GLU69 3.4 46.9 1.0
ND1 B:HIS103 4.2 33.8 1.0
ND1 B:HIS64 4.2 39.7 1.0
CG B:HIS103 4.2 42.6 1.0
ND1 B:HIS62 4.3 41.4 1.0
CG B:HIS64 4.3 39.7 1.0
CG B:HIS62 4.3 42.2 1.0
CG B:GLU69 4.4 46.1 1.0
CB B:GLU69 4.8 44.4 1.0

Iron binding site 4 out of 4 in 2h0v

Go back to Iron Binding Sites List in 2h0v
Iron binding site 4 out of 4 in the Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of A Putative Quercetin 2,3-Dioxygenase (Yxag, BSU39980) From Bacillus Subtilis at 2.60 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe501

b:42.7
occ:1.00
 O1 B:TLA503 2.0 51.3 1.0
OE1 B:GLU241 2.0 41.4 1.0
O2 B:TLA503 2.0 41.1 1.0
NE2 B:HIS236 2.1 44.6 1.0
NE2 B:HIS275 2.1 36.7 1.0
NE2 B:HIS234 2.3 49.6 1.0
C1 B:TLA503 2.7 49.2 1.0
C2 B:TLA503 2.9 46.2 1.0
CD B:GLU241 2.9 41.5 1.0
CE1 B:HIS275 3.0 34.6 1.0
CE1 B:HIS236 3.1 49.6 1.0
CD2 B:HIS236 3.1 44.3 1.0
CD2 B:HIS275 3.2 30.4 1.0
CE1 B:HIS234 3.2 49.5 1.0
OE2 B:GLU241 3.3 43.8 1.0
CD2 B:HIS234 3.3 41.1 1.0
O3 B:TLA503 3.8 49.5 1.0
O11 B:TLA503 4.0 46.0 1.0
C3 B:TLA503 4.0 39.2 1.0
ND1 B:HIS275 4.1 35.5 1.0
ND1 B:HIS236 4.2 44.4 1.0
CG B:HIS236 4.2 44.4 1.0
CG B:GLU241 4.2 41.3 1.0
CG B:HIS275 4.2 40.0 1.0
ND1 B:HIS234 4.3 39.5 1.0
CG B:HIS234 4.4 41.2 1.0
CZ B:PHE243 4.5 50.4 1.0
CB B:GLU241 4.7 42.5 1.0
CE1 B:PHE298 4.8 69.3 1.0
C4 B:TLA503 4.9 47.5 1.0
O4 B:TLA503 4.9 45.2 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Aug 3 22:48:56 2024

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