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Iron in PDB 2hbd: High Resolution X-Ray Structures of Myoglobin-and Hemoglobin-Alkyl Isocyanide Complexes

Protein crystallography data

The structure of High Resolution X-Ray Structures of Myoglobin-and Hemoglobin-Alkyl Isocyanide Complexes, PDB code: 2hbd was solved by K.A.Johnson, J.S.Olson, G.N.Phillips Jr., with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 5.00 / 2.20
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 54.050, 54.050, 193.800, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / n/a

Iron Binding Sites:

The binding sites of Iron atom in the High Resolution X-Ray Structures of Myoglobin-and Hemoglobin-Alkyl Isocyanide Complexes (pdb code 2hbd). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the High Resolution X-Ray Structures of Myoglobin-and Hemoglobin-Alkyl Isocyanide Complexes, PDB code: 2hbd:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 2hbd

Go back to Iron Binding Sites List in 2hbd
Iron binding site 1 out of 2 in the High Resolution X-Ray Structures of Myoglobin-and Hemoglobin-Alkyl Isocyanide Complexes


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of High Resolution X-Ray Structures of Myoglobin-and Hemoglobin-Alkyl Isocyanide Complexes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe142

b:25.1
occ:1.00
FE A:HEM142 0.0 25.1 1.0
C A:MNC143 1.9 19.8 1.0
NA A:HEM142 2.0 28.5 1.0
ND A:HEM142 2.0 27.8 1.0
NB A:HEM142 2.0 23.9 1.0
NE2 A:HIS87 2.0 19.9 1.0
NC A:HEM142 2.1 26.2 1.0
N A:MNC143 2.3 20.9 1.0
CE1 A:HIS87 2.7 19.7 1.0
C1B A:HEM142 3.0 21.3 1.0
C4A A:HEM142 3.0 27.6 1.0
C1A A:HEM142 3.0 31.8 1.0
C4D A:HEM142 3.0 29.8 1.0
C1C A:HEM142 3.1 27.5 1.0
C4B A:HEM142 3.1 22.1 1.0
C1D A:HEM142 3.1 28.5 1.0
C4C A:HEM142 3.1 23.2 1.0
CD2 A:HIS87 3.2 15.8 1.0
CHB A:HEM142 3.3 22.6 1.0
CHA A:HEM142 3.4 29.3 1.0
CHC A:HEM142 3.4 27.7 1.0
CHD A:HEM142 3.4 25.8 1.0
C1 A:MNC143 3.7 17.1 1.0
ND1 A:HIS87 4.0 16.1 1.0
NE2 A:HIS58 4.2 32.4 1.0
C2B A:HEM142 4.2 25.5 1.0
CG A:HIS87 4.2 17.7 1.0
C2C A:HEM142 4.3 23.3 1.0
C3D A:HEM142 4.3 30.9 1.0
C3A A:HEM142 4.3 30.8 1.0
C3C A:HEM142 4.3 26.2 1.0
C2D A:HEM142 4.3 30.0 1.0
C3B A:HEM142 4.3 20.9 1.0
C2A A:HEM142 4.4 35.4 1.0

Iron binding site 2 out of 2 in 2hbd

Go back to Iron Binding Sites List in 2hbd
Iron binding site 2 out of 2 in the High Resolution X-Ray Structures of Myoglobin-and Hemoglobin-Alkyl Isocyanide Complexes


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of High Resolution X-Ray Structures of Myoglobin-and Hemoglobin-Alkyl Isocyanide Complexes within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe147

b:33.0
occ:1.00
FE B:HEM147 0.0 33.0 1.0
C B:MNC148 1.9 25.3 1.0
NE2 B:HIS92 1.9 25.4 1.0
NB B:HEM147 2.0 27.1 1.0
ND B:HEM147 2.0 32.1 1.0
NA B:HEM147 2.0 36.3 1.0
NC B:HEM147 2.2 33.3 1.0
N B:MNC148 2.4 27.3 1.0
CE1 B:HIS92 2.8 27.1 1.0
CD2 B:HIS92 2.9 30.0 1.0
C1B B:HEM147 3.0 29.9 1.0
C4B B:HEM147 3.0 30.0 1.0
C4D B:HEM147 3.0 36.1 1.0
C1D B:HEM147 3.1 33.4 1.0
C4A B:HEM147 3.1 37.5 1.0
C1A B:HEM147 3.1 36.1 1.0
C1C B:HEM147 3.2 31.5 1.0
C4C B:HEM147 3.3 32.5 1.0
CHB B:HEM147 3.4 31.3 1.0
CHA B:HEM147 3.4 33.0 1.0
CHC B:HEM147 3.4 26.4 1.0
CHD B:HEM147 3.6 34.1 1.0
C1 B:MNC148 3.7 32.5 1.0
ND1 B:HIS92 4.0 30.9 1.0
CG B:HIS92 4.0 31.2 1.0
C2B B:HEM147 4.2 31.4 1.0
C3D B:HEM147 4.2 38.8 1.0
C2D B:HEM147 4.2 34.7 1.0
C3B B:HEM147 4.3 32.6 1.0
C2A B:HEM147 4.3 40.2 1.0
C3A B:HEM147 4.3 39.6 1.0
NE2 B:HIS63 4.4 36.8 1.0
C2C B:HEM147 4.5 32.7 1.0
C3C B:HEM147 4.6 35.9 1.0
CG2 B:VAL67 4.9 32.1 1.0

Reference:

K.A.Johnson, K.A.Johnson, J.S.Olson, G.N.Phillips Jr.. N/A N/A.
Page generated: Sat Aug 3 22:52:37 2024

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