Iron in PDB 2hbd: High Resolution X-Ray Structures of Myoglobin-and Hemoglobin-Alkyl Isocyanide Complexes
Protein crystallography data
The structure of High Resolution X-Ray Structures of Myoglobin-and Hemoglobin-Alkyl Isocyanide Complexes, PDB code: 2hbd
was solved by
K.A.Johnson,
J.S.Olson,
G.N.Phillips Jr.,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
5.00 /
2.20
|
Space group
|
P 41 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
54.050,
54.050,
193.800,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
17.6 /
n/a
|
Iron Binding Sites:
The binding sites of Iron atom in the High Resolution X-Ray Structures of Myoglobin-and Hemoglobin-Alkyl Isocyanide Complexes
(pdb code 2hbd). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
High Resolution X-Ray Structures of Myoglobin-and Hemoglobin-Alkyl Isocyanide Complexes, PDB code: 2hbd:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 2hbd
Go back to
Iron Binding Sites List in 2hbd
Iron binding site 1 out
of 2 in the High Resolution X-Ray Structures of Myoglobin-and Hemoglobin-Alkyl Isocyanide Complexes
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of High Resolution X-Ray Structures of Myoglobin-and Hemoglobin-Alkyl Isocyanide Complexes within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe142
b:25.1
occ:1.00
|
FE
|
A:HEM142
|
0.0
|
25.1
|
1.0
|
C
|
A:MNC143
|
1.9
|
19.8
|
1.0
|
NA
|
A:HEM142
|
2.0
|
28.5
|
1.0
|
ND
|
A:HEM142
|
2.0
|
27.8
|
1.0
|
NB
|
A:HEM142
|
2.0
|
23.9
|
1.0
|
NE2
|
A:HIS87
|
2.0
|
19.9
|
1.0
|
NC
|
A:HEM142
|
2.1
|
26.2
|
1.0
|
N
|
A:MNC143
|
2.3
|
20.9
|
1.0
|
CE1
|
A:HIS87
|
2.7
|
19.7
|
1.0
|
C1B
|
A:HEM142
|
3.0
|
21.3
|
1.0
|
C4A
|
A:HEM142
|
3.0
|
27.6
|
1.0
|
C1A
|
A:HEM142
|
3.0
|
31.8
|
1.0
|
C4D
|
A:HEM142
|
3.0
|
29.8
|
1.0
|
C1C
|
A:HEM142
|
3.1
|
27.5
|
1.0
|
C4B
|
A:HEM142
|
3.1
|
22.1
|
1.0
|
C1D
|
A:HEM142
|
3.1
|
28.5
|
1.0
|
C4C
|
A:HEM142
|
3.1
|
23.2
|
1.0
|
CD2
|
A:HIS87
|
3.2
|
15.8
|
1.0
|
CHB
|
A:HEM142
|
3.3
|
22.6
|
1.0
|
CHA
|
A:HEM142
|
3.4
|
29.3
|
1.0
|
CHC
|
A:HEM142
|
3.4
|
27.7
|
1.0
|
CHD
|
A:HEM142
|
3.4
|
25.8
|
1.0
|
C1
|
A:MNC143
|
3.7
|
17.1
|
1.0
|
ND1
|
A:HIS87
|
4.0
|
16.1
|
1.0
|
NE2
|
A:HIS58
|
4.2
|
32.4
|
1.0
|
C2B
|
A:HEM142
|
4.2
|
25.5
|
1.0
|
CG
|
A:HIS87
|
4.2
|
17.7
|
1.0
|
C2C
|
A:HEM142
|
4.3
|
23.3
|
1.0
|
C3D
|
A:HEM142
|
4.3
|
30.9
|
1.0
|
C3A
|
A:HEM142
|
4.3
|
30.8
|
1.0
|
C3C
|
A:HEM142
|
4.3
|
26.2
|
1.0
|
C2D
|
A:HEM142
|
4.3
|
30.0
|
1.0
|
C3B
|
A:HEM142
|
4.3
|
20.9
|
1.0
|
C2A
|
A:HEM142
|
4.4
|
35.4
|
1.0
|
|
Iron binding site 2 out
of 2 in 2hbd
Go back to
Iron Binding Sites List in 2hbd
Iron binding site 2 out
of 2 in the High Resolution X-Ray Structures of Myoglobin-and Hemoglobin-Alkyl Isocyanide Complexes
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of High Resolution X-Ray Structures of Myoglobin-and Hemoglobin-Alkyl Isocyanide Complexes within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe147
b:33.0
occ:1.00
|
FE
|
B:HEM147
|
0.0
|
33.0
|
1.0
|
C
|
B:MNC148
|
1.9
|
25.3
|
1.0
|
NE2
|
B:HIS92
|
1.9
|
25.4
|
1.0
|
NB
|
B:HEM147
|
2.0
|
27.1
|
1.0
|
ND
|
B:HEM147
|
2.0
|
32.1
|
1.0
|
NA
|
B:HEM147
|
2.0
|
36.3
|
1.0
|
NC
|
B:HEM147
|
2.2
|
33.3
|
1.0
|
N
|
B:MNC148
|
2.4
|
27.3
|
1.0
|
CE1
|
B:HIS92
|
2.8
|
27.1
|
1.0
|
CD2
|
B:HIS92
|
2.9
|
30.0
|
1.0
|
C1B
|
B:HEM147
|
3.0
|
29.9
|
1.0
|
C4B
|
B:HEM147
|
3.0
|
30.0
|
1.0
|
C4D
|
B:HEM147
|
3.0
|
36.1
|
1.0
|
C1D
|
B:HEM147
|
3.1
|
33.4
|
1.0
|
C4A
|
B:HEM147
|
3.1
|
37.5
|
1.0
|
C1A
|
B:HEM147
|
3.1
|
36.1
|
1.0
|
C1C
|
B:HEM147
|
3.2
|
31.5
|
1.0
|
C4C
|
B:HEM147
|
3.3
|
32.5
|
1.0
|
CHB
|
B:HEM147
|
3.4
|
31.3
|
1.0
|
CHA
|
B:HEM147
|
3.4
|
33.0
|
1.0
|
CHC
|
B:HEM147
|
3.4
|
26.4
|
1.0
|
CHD
|
B:HEM147
|
3.6
|
34.1
|
1.0
|
C1
|
B:MNC148
|
3.7
|
32.5
|
1.0
|
ND1
|
B:HIS92
|
4.0
|
30.9
|
1.0
|
CG
|
B:HIS92
|
4.0
|
31.2
|
1.0
|
C2B
|
B:HEM147
|
4.2
|
31.4
|
1.0
|
C3D
|
B:HEM147
|
4.2
|
38.8
|
1.0
|
C2D
|
B:HEM147
|
4.2
|
34.7
|
1.0
|
C3B
|
B:HEM147
|
4.3
|
32.6
|
1.0
|
C2A
|
B:HEM147
|
4.3
|
40.2
|
1.0
|
C3A
|
B:HEM147
|
4.3
|
39.6
|
1.0
|
NE2
|
B:HIS63
|
4.4
|
36.8
|
1.0
|
C2C
|
B:HEM147
|
4.5
|
32.7
|
1.0
|
C3C
|
B:HEM147
|
4.6
|
35.9
|
1.0
|
CG2
|
B:VAL67
|
4.9
|
32.1
|
1.0
|
|
Reference:
K.A.Johnson,
K.A.Johnson,
J.S.Olson,
G.N.Phillips Jr..
N/A N/A.
Page generated: Sat Aug 3 22:52:37 2024
|