Iron in PDB 2hip: The Molecular Structure of the High Potential Iron-Sulfur Protein Isolated From Ectothiorhodospira Halophila Determined at 2.5-Angstroms Resolution
Protein crystallography data
The structure of The Molecular Structure of the High Potential Iron-Sulfur Protein Isolated From Ectothiorhodospira Halophila Determined at 2.5-Angstroms Resolution, PDB code: 2hip
was solved by
D.R.Breiter,
T.E.Meyer,
I.Rayment,
H.M.Holden,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
N/A /
2.50
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
60.000,
31.940,
40.270,
90.00,
100.50,
90.00
|
R / Rfree (%)
|
n/a /
n/a
|
Iron Binding Sites:
The binding sites of Iron atom in the The Molecular Structure of the High Potential Iron-Sulfur Protein Isolated From Ectothiorhodospira Halophila Determined at 2.5-Angstroms Resolution
(pdb code 2hip). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the
The Molecular Structure of the High Potential Iron-Sulfur Protein Isolated From Ectothiorhodospira Halophila Determined at 2.5-Angstroms Resolution, PDB code: 2hip:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Iron binding site 1 out
of 8 in 2hip
Go back to
Iron Binding Sites List in 2hip
Iron binding site 1 out
of 8 in the The Molecular Structure of the High Potential Iron-Sulfur Protein Isolated From Ectothiorhodospira Halophila Determined at 2.5-Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of The Molecular Structure of the High Potential Iron-Sulfur Protein Isolated From Ectothiorhodospira Halophila Determined at 2.5-Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe73
b:14.6
occ:1.00
|
FE1
|
A:SF473
|
0.0
|
14.6
|
1.0
|
SG
|
A:CYS31
|
2.2
|
35.9
|
1.0
|
S4
|
A:SF473
|
2.2
|
8.1
|
1.0
|
S2
|
A:SF473
|
2.2
|
10.9
|
1.0
|
S3
|
A:SF473
|
2.2
|
11.6
|
1.0
|
FE2
|
A:SF473
|
2.6
|
14.4
|
1.0
|
FE4
|
A:SF473
|
2.6
|
14.3
|
1.0
|
FE3
|
A:SF473
|
2.7
|
9.2
|
1.0
|
CB
|
A:CYS31
|
3.2
|
10.2
|
1.0
|
CA
|
A:CYS31
|
3.6
|
71.1
|
1.0
|
S1
|
A:SF473
|
3.8
|
11.8
|
1.0
|
N
|
A:CYS31
|
4.4
|
3.5
|
1.0
|
SG
|
A:CYS64
|
4.6
|
18.9
|
1.0
|
SG
|
A:CYS48
|
4.6
|
8.6
|
1.0
|
C
|
A:CYS31
|
4.7
|
37.4
|
1.0
|
N
|
A:CYS64
|
4.7
|
15.2
|
1.0
|
O
|
A:CYS31
|
4.7
|
8.8
|
1.0
|
CG2
|
A:VAL58
|
4.7
|
1.9
|
1.0
|
CB
|
A:CYS34
|
4.8
|
20.1
|
1.0
|
SG
|
A:CYS34
|
4.8
|
16.1
|
1.0
|
CB
|
A:CYS64
|
4.8
|
2.6
|
1.0
|
CA
|
A:TRP63
|
4.9
|
3.2
|
1.0
|
CB
|
A:VAL58
|
4.9
|
6.9
|
1.0
|
CE1
|
A:TYR12
|
5.0
|
1.0
|
1.0
|
|
Iron binding site 2 out
of 8 in 2hip
Go back to
Iron Binding Sites List in 2hip
Iron binding site 2 out
of 8 in the The Molecular Structure of the High Potential Iron-Sulfur Protein Isolated From Ectothiorhodospira Halophila Determined at 2.5-Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of The Molecular Structure of the High Potential Iron-Sulfur Protein Isolated From Ectothiorhodospira Halophila Determined at 2.5-Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe73
b:14.4
occ:1.00
|
FE2
|
A:SF473
|
0.0
|
14.4
|
1.0
|
S1
|
A:SF473
|
2.2
|
11.8
|
1.0
|
S3
|
A:SF473
|
2.2
|
11.6
|
1.0
|
S4
|
A:SF473
|
2.2
|
8.1
|
1.0
|
SG
|
A:CYS34
|
2.4
|
16.1
|
1.0
|
FE1
|
A:SF473
|
2.6
|
14.6
|
1.0
|
FE3
|
A:SF473
|
2.6
|
9.2
|
1.0
|
FE4
|
A:SF473
|
2.7
|
14.3
|
1.0
|
CB
|
A:CYS34
|
3.2
|
20.1
|
1.0
|
S2
|
A:SF473
|
3.8
|
10.9
|
1.0
|
CB
|
A:PHE36
|
4.0
|
12.5
|
1.0
|
SG
|
A:CYS64
|
4.3
|
18.9
|
1.0
|
SG
|
A:CYS48
|
4.5
|
8.6
|
1.0
|
N
|
A:PHE36
|
4.5
|
22.4
|
1.0
|
CD1
|
A:TYR67
|
4.5
|
1.0
|
1.0
|
CA
|
A:TYR67
|
4.6
|
1.0
|
1.0
|
CA
|
A:CYS31
|
4.6
|
71.1
|
1.0
|
SG
|
A:CYS31
|
4.6
|
35.9
|
1.0
|
CD2
|
A:PHE36
|
4.6
|
1.0
|
1.0
|
CA
|
A:PHE36
|
4.6
|
1.2
|
1.0
|
CA
|
A:CYS34
|
4.7
|
19.5
|
1.0
|
CG
|
A:PHE36
|
4.8
|
22.7
|
1.0
|
O
|
A:CYS31
|
4.8
|
8.8
|
1.0
|
N
|
A:TRP37
|
4.8
|
3.7
|
1.0
|
C
|
A:PHE36
|
4.9
|
60.9
|
1.0
|
O
|
A:VAL66
|
4.9
|
33.4
|
1.0
|
CB
|
A:CYS31
|
5.0
|
10.2
|
1.0
|
|
Iron binding site 3 out
of 8 in 2hip
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Iron Binding Sites List in 2hip
Iron binding site 3 out
of 8 in the The Molecular Structure of the High Potential Iron-Sulfur Protein Isolated From Ectothiorhodospira Halophila Determined at 2.5-Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of The Molecular Structure of the High Potential Iron-Sulfur Protein Isolated From Ectothiorhodospira Halophila Determined at 2.5-Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe73
b:9.2
occ:1.00
|
FE3
|
A:SF473
|
0.0
|
9.2
|
1.0
|
SG
|
A:CYS48
|
2.1
|
8.6
|
1.0
|
S4
|
A:SF473
|
2.2
|
8.1
|
1.0
|
S1
|
A:SF473
|
2.2
|
11.8
|
1.0
|
S2
|
A:SF473
|
2.2
|
10.9
|
1.0
|
FE2
|
A:SF473
|
2.6
|
14.4
|
1.0
|
FE1
|
A:SF473
|
2.7
|
14.6
|
1.0
|
FE4
|
A:SF473
|
2.7
|
14.3
|
1.0
|
CB
|
A:CYS48
|
3.4
|
29.0
|
1.0
|
S3
|
A:SF473
|
3.8
|
11.6
|
1.0
|
CB
|
A:PHE36
|
4.1
|
12.5
|
1.0
|
CA
|
A:CYS48
|
4.3
|
45.9
|
1.0
|
SG
|
A:CYS64
|
4.4
|
18.9
|
1.0
|
CD2
|
A:PHE53
|
4.4
|
1.0
|
1.0
|
CG
|
A:PHE53
|
4.6
|
55.0
|
1.0
|
SG
|
A:CYS31
|
4.7
|
35.9
|
1.0
|
CE2
|
A:PHE53
|
4.7
|
31.5
|
1.0
|
CG1
|
A:VAL58
|
4.8
|
6.2
|
1.0
|
SG
|
A:CYS34
|
4.8
|
16.1
|
1.0
|
CG2
|
A:VAL58
|
4.9
|
1.9
|
1.0
|
C
|
A:PHE36
|
5.0
|
60.9
|
1.0
|
CG
|
A:PHE36
|
5.0
|
22.7
|
1.0
|
|
Iron binding site 4 out
of 8 in 2hip
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Iron Binding Sites List in 2hip
Iron binding site 4 out
of 8 in the The Molecular Structure of the High Potential Iron-Sulfur Protein Isolated From Ectothiorhodospira Halophila Determined at 2.5-Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of The Molecular Structure of the High Potential Iron-Sulfur Protein Isolated From Ectothiorhodospira Halophila Determined at 2.5-Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe73
b:14.3
occ:1.00
|
FE4
|
A:SF473
|
0.0
|
14.3
|
1.0
|
SG
|
A:CYS64
|
2.0
|
18.9
|
1.0
|
S1
|
A:SF473
|
2.2
|
11.8
|
1.0
|
S3
|
A:SF473
|
2.2
|
11.6
|
1.0
|
S2
|
A:SF473
|
2.2
|
10.9
|
1.0
|
FE1
|
A:SF473
|
2.6
|
14.6
|
1.0
|
FE2
|
A:SF473
|
2.7
|
14.4
|
1.0
|
FE3
|
A:SF473
|
2.7
|
9.2
|
1.0
|
CB
|
A:CYS64
|
2.9
|
2.6
|
1.0
|
CA
|
A:CYS64
|
3.8
|
15.1
|
1.0
|
N
|
A:CYS64
|
3.8
|
15.2
|
1.0
|
S4
|
A:SF473
|
3.8
|
8.1
|
1.0
|
O
|
A:CYS64
|
4.2
|
14.6
|
1.0
|
CE2
|
A:PHE53
|
4.3
|
31.5
|
1.0
|
C
|
A:CYS64
|
4.3
|
42.6
|
1.0
|
SG
|
A:CYS48
|
4.5
|
8.6
|
1.0
|
CG2
|
A:VAL66
|
4.5
|
13.4
|
1.0
|
SG
|
A:CYS31
|
4.5
|
35.9
|
1.0
|
CZ
|
A:PHE53
|
4.6
|
43.6
|
1.0
|
C
|
A:TRP63
|
4.7
|
20.8
|
1.0
|
CD2
|
A:PHE53
|
4.8
|
1.0
|
1.0
|
N
|
A:TYR67
|
4.8
|
26.8
|
1.0
|
C
|
A:VAL66
|
4.8
|
5.7
|
1.0
|
SG
|
A:CYS34
|
4.9
|
16.1
|
1.0
|
O
|
A:VAL66
|
4.9
|
33.4
|
1.0
|
CA
|
A:TYR67
|
4.9
|
1.0
|
1.0
|
|
Iron binding site 5 out
of 8 in 2hip
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Iron Binding Sites List in 2hip
Iron binding site 5 out
of 8 in the The Molecular Structure of the High Potential Iron-Sulfur Protein Isolated From Ectothiorhodospira Halophila Determined at 2.5-Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of The Molecular Structure of the High Potential Iron-Sulfur Protein Isolated From Ectothiorhodospira Halophila Determined at 2.5-Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe73
b:15.2
occ:1.00
|
FE1
|
B:SF473
|
0.0
|
15.2
|
1.0
|
SG
|
B:CYS31
|
2.1
|
13.2
|
1.0
|
S4
|
B:SF473
|
2.2
|
13.4
|
1.0
|
S3
|
B:SF473
|
2.2
|
14.4
|
1.0
|
S2
|
B:SF473
|
2.2
|
12.5
|
1.0
|
FE4
|
B:SF473
|
2.6
|
16.5
|
1.0
|
FE3
|
B:SF473
|
2.7
|
14.2
|
1.0
|
FE2
|
B:SF473
|
2.7
|
14.7
|
1.0
|
CB
|
B:CYS31
|
2.9
|
1.0
|
1.0
|
CA
|
B:CYS31
|
3.3
|
1.0
|
1.0
|
S1
|
B:SF473
|
3.8
|
13.1
|
1.0
|
SG
|
B:CYS64
|
4.2
|
15.3
|
1.0
|
N
|
B:CYS31
|
4.2
|
17.1
|
1.0
|
C
|
B:CYS31
|
4.4
|
1.0
|
1.0
|
SG
|
B:CYS48
|
4.6
|
11.8
|
1.0
|
O
|
B:CYS31
|
4.6
|
13.4
|
1.0
|
CG2
|
B:VAL58
|
4.7
|
17.3
|
1.0
|
N
|
B:CYS64
|
4.7
|
1.0
|
1.0
|
CA
|
B:TRP63
|
4.7
|
1.6
|
1.0
|
SG
|
B:CYS34
|
4.7
|
2.4
|
1.0
|
CB
|
B:CYS34
|
4.7
|
2.0
|
1.0
|
O
|
B:GLY62
|
4.8
|
6.5
|
1.0
|
CE1
|
B:TYR12
|
4.8
|
1.0
|
1.0
|
C
|
B:TRP63
|
4.9
|
16.1
|
1.0
|
CB
|
B:CYS64
|
5.0
|
8.0
|
1.0
|
|
Iron binding site 6 out
of 8 in 2hip
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Iron Binding Sites List in 2hip
Iron binding site 6 out
of 8 in the The Molecular Structure of the High Potential Iron-Sulfur Protein Isolated From Ectothiorhodospira Halophila Determined at 2.5-Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of The Molecular Structure of the High Potential Iron-Sulfur Protein Isolated From Ectothiorhodospira Halophila Determined at 2.5-Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe73
b:14.7
occ:1.00
|
FE2
|
B:SF473
|
0.0
|
14.7
|
1.0
|
S1
|
B:SF473
|
2.2
|
13.1
|
1.0
|
S4
|
B:SF473
|
2.2
|
13.4
|
1.0
|
S3
|
B:SF473
|
2.2
|
14.4
|
1.0
|
SG
|
B:CYS34
|
2.3
|
2.4
|
1.0
|
FE4
|
B:SF473
|
2.6
|
16.5
|
1.0
|
FE1
|
B:SF473
|
2.7
|
15.2
|
1.0
|
FE3
|
B:SF473
|
2.7
|
14.2
|
1.0
|
CB
|
B:CYS34
|
3.1
|
2.0
|
1.0
|
S2
|
B:SF473
|
3.8
|
12.5
|
1.0
|
SG
|
B:CYS64
|
4.1
|
15.3
|
1.0
|
CB
|
B:PHE36
|
4.2
|
16.7
|
1.0
|
CD1
|
B:TYR67
|
4.3
|
10.4
|
1.0
|
CA
|
B:CYS31
|
4.4
|
1.0
|
1.0
|
CA
|
B:TYR67
|
4.4
|
7.0
|
1.0
|
SG
|
B:CYS48
|
4.5
|
11.8
|
1.0
|
CA
|
B:CYS34
|
4.6
|
17.8
|
1.0
|
SG
|
B:CYS31
|
4.6
|
13.2
|
1.0
|
O
|
B:CYS31
|
4.7
|
13.4
|
1.0
|
CD2
|
B:PHE36
|
4.7
|
15.4
|
1.0
|
N
|
B:PHE36
|
4.7
|
41.6
|
1.0
|
CB
|
B:TYR67
|
4.7
|
1.6
|
1.0
|
CB
|
B:CYS31
|
4.8
|
1.0
|
1.0
|
N
|
B:TYR67
|
4.8
|
5.8
|
1.0
|
CA
|
B:PHE36
|
4.8
|
1.0
|
1.0
|
CG
|
B:TYR67
|
5.0
|
17.7
|
1.0
|
CG
|
B:PHE36
|
5.0
|
31.3
|
1.0
|
|
Iron binding site 7 out
of 8 in 2hip
Go back to
Iron Binding Sites List in 2hip
Iron binding site 7 out
of 8 in the The Molecular Structure of the High Potential Iron-Sulfur Protein Isolated From Ectothiorhodospira Halophila Determined at 2.5-Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of The Molecular Structure of the High Potential Iron-Sulfur Protein Isolated From Ectothiorhodospira Halophila Determined at 2.5-Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe73
b:14.2
occ:1.00
|
FE3
|
B:SF473
|
0.0
|
14.2
|
1.0
|
SG
|
B:CYS48
|
2.1
|
11.8
|
1.0
|
S4
|
B:SF473
|
2.2
|
13.4
|
1.0
|
S1
|
B:SF473
|
2.2
|
13.1
|
1.0
|
S2
|
B:SF473
|
2.2
|
12.5
|
1.0
|
FE4
|
B:SF473
|
2.6
|
16.5
|
1.0
|
FE1
|
B:SF473
|
2.7
|
15.2
|
1.0
|
FE2
|
B:SF473
|
2.7
|
14.7
|
1.0
|
CB
|
B:CYS48
|
3.4
|
26.0
|
1.0
|
S3
|
B:SF473
|
3.8
|
14.4
|
1.0
|
CB
|
B:PHE36
|
4.0
|
16.7
|
1.0
|
SG
|
B:CYS64
|
4.0
|
15.3
|
1.0
|
CD1
|
B:PHE53
|
4.3
|
1.0
|
1.0
|
CE1
|
B:PHE53
|
4.3
|
45.2
|
1.0
|
CA
|
B:CYS48
|
4.4
|
23.1
|
1.0
|
SG
|
B:CYS34
|
4.5
|
2.4
|
1.0
|
SG
|
B:CYS31
|
4.6
|
13.2
|
1.0
|
CB
|
B:HIS50
|
4.8
|
23.2
|
1.0
|
CG
|
B:PHE53
|
4.8
|
23.6
|
1.0
|
O
|
B:PHE36
|
4.8
|
3.8
|
1.0
|
C
|
B:PHE36
|
4.9
|
24.5
|
1.0
|
CZ
|
B:PHE53
|
4.9
|
13.0
|
1.0
|
CA
|
B:PHE36
|
4.9
|
1.0
|
1.0
|
CG2
|
B:VAL58
|
5.0
|
17.3
|
1.0
|
|
Iron binding site 8 out
of 8 in 2hip
Go back to
Iron Binding Sites List in 2hip
Iron binding site 8 out
of 8 in the The Molecular Structure of the High Potential Iron-Sulfur Protein Isolated From Ectothiorhodospira Halophila Determined at 2.5-Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of The Molecular Structure of the High Potential Iron-Sulfur Protein Isolated From Ectothiorhodospira Halophila Determined at 2.5-Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe73
b:16.5
occ:1.00
|
FE4
|
B:SF473
|
0.0
|
16.5
|
1.0
|
SG
|
B:CYS64
|
1.7
|
15.3
|
1.0
|
S3
|
B:SF473
|
2.2
|
14.4
|
1.0
|
S1
|
B:SF473
|
2.2
|
13.1
|
1.0
|
S2
|
B:SF473
|
2.2
|
12.5
|
1.0
|
FE1
|
B:SF473
|
2.6
|
15.2
|
1.0
|
FE3
|
B:SF473
|
2.6
|
14.2
|
1.0
|
FE2
|
B:SF473
|
2.6
|
14.7
|
1.0
|
CB
|
B:CYS64
|
3.1
|
8.0
|
1.0
|
S4
|
B:SF473
|
3.8
|
13.4
|
1.0
|
N
|
B:CYS64
|
3.8
|
1.0
|
1.0
|
CA
|
B:CYS64
|
3.8
|
1.4
|
1.0
|
O
|
B:CYS64
|
4.1
|
1.0
|
1.0
|
CE1
|
B:PHE53
|
4.2
|
45.2
|
1.0
|
C
|
B:CYS64
|
4.3
|
46.3
|
1.0
|
CZ
|
B:PHE53
|
4.3
|
13.0
|
1.0
|
SG
|
B:CYS31
|
4.4
|
13.2
|
1.0
|
SG
|
B:CYS48
|
4.5
|
11.8
|
1.0
|
C
|
B:TRP63
|
4.6
|
16.1
|
1.0
|
N
|
B:TYR67
|
4.7
|
5.8
|
1.0
|
SG
|
B:CYS34
|
4.8
|
2.4
|
1.0
|
CG2
|
B:VAL66
|
4.9
|
37.4
|
1.0
|
C
|
B:VAL66
|
4.9
|
1.8
|
1.0
|
N
|
B:VAL66
|
4.9
|
21.8
|
1.0
|
CD1
|
B:PHE53
|
4.9
|
1.0
|
1.0
|
CA
|
B:TYR67
|
4.9
|
7.0
|
1.0
|
|
Reference:
D.R.Breiter,
T.E.Meyer,
I.Rayment,
H.M.Holden.
The Molecular Structure of the High Potential Iron-Sulfur Protein Isolated From Ectothiorhodospira Halophila Determined at 2.5-A Resolution. J.Biol.Chem. V. 266 18660 1991.
ISSN: ISSN 0021-9258
PubMed: 1917989
Page generated: Sat Aug 3 22:58:17 2024
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