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Iron in PDB 2hu9: X-Ray Structure of the Archaeoglobus Fulgidus Copz N- Terminal Domain

Protein crystallography data

The structure of X-Ray Structure of the Archaeoglobus Fulgidus Copz N- Terminal Domain, PDB code: 2hu9 was solved by M.H.Sazinsky, B.Lemoine, J.M.Arguello, A.C.Rosenzweig, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 51.16 / 1.78
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 56.253, 64.469, 84.148, 90.00, 90.00, 90.00
R / Rfree (%) 20.5 / 22.1

Other elements in 2hu9:

The structure of X-Ray Structure of the Archaeoglobus Fulgidus Copz N- Terminal Domain also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the X-Ray Structure of the Archaeoglobus Fulgidus Copz N- Terminal Domain (pdb code 2hu9). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the X-Ray Structure of the Archaeoglobus Fulgidus Copz N- Terminal Domain, PDB code: 2hu9:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 2hu9

Go back to Iron Binding Sites List in 2hu9
Iron binding site 1 out of 4 in the X-Ray Structure of the Archaeoglobus Fulgidus Copz N- Terminal Domain


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of X-Ray Structure of the Archaeoglobus Fulgidus Copz N- Terminal Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe131

b:27.9
occ:1.00
FE1 A:FES131 0.0 27.9 1.0
S1 A:FES131 2.3 26.0 1.0
SG A:CYS119 2.3 30.6 1.0
S2 A:FES131 2.3 32.2 1.0
SG A:CYS75 2.4 29.0 1.0
FE2 A:FES131 2.8 27.7 1.0
CB A:CYS75 3.3 28.8 1.0
CB A:CYS119 3.3 30.1 1.0
CA A:CYS75 3.5 27.9 1.0
N A:GLY104 3.8 40.5 1.0
N A:CYS119 3.9 30.4 1.0
N A:TYR76 4.0 25.9 1.0
CA A:GLY104 4.1 40.2 1.0
C A:CYS75 4.1 27.2 1.0
CA A:CYS119 4.2 31.7 1.0
N A:CYS77 4.3 26.4 1.0
CB A:CYS77 4.5 27.9 1.0
SG A:CYS77 4.6 29.0 1.0
SG A:CYS109 4.6 27.1 1.0
N A:CYS75 4.8 28.3 1.0
C A:GLY104 4.8 39.9 1.0
O A:VAL74 4.9 28.7 1.0
C A:ALA103 5.0 41.0 1.0
CA A:CYS77 5.0 27.2 1.0

Iron binding site 2 out of 4 in 2hu9

Go back to Iron Binding Sites List in 2hu9
Iron binding site 2 out of 4 in the X-Ray Structure of the Archaeoglobus Fulgidus Copz N- Terminal Domain


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of X-Ray Structure of the Archaeoglobus Fulgidus Copz N- Terminal Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe131

b:27.7
occ:1.00
FE2 A:FES131 0.0 27.7 1.0
S1 A:FES131 2.2 26.0 1.0
SG A:CYS109 2.3 27.1 1.0
S2 A:FES131 2.4 32.2 1.0
SG A:CYS77 2.4 29.0 1.0
FE1 A:FES131 2.8 27.9 1.0
CB A:CYS77 3.3 27.9 1.0
CB A:CYS109 3.3 26.3 1.0
CA A:CYS109 3.7 25.6 1.0
N A:CYS77 4.0 26.4 1.0
N A:CYS109 4.0 25.6 1.0
OG1 A:THR112 4.1 25.9 1.0
CA A:CYS77 4.2 27.2 1.0
SG A:CYS75 4.5 29.0 1.0
C A:GLY106 4.6 34.3 1.0
CA A:GLY106 4.6 34.9 1.0
O A:GLY106 4.7 34.0 1.0
N A:CYS119 4.7 30.4 1.0
SG A:CYS119 4.8 30.6 1.0
CA A:CYS118 4.8 30.6 1.0
N A:GLY106 4.8 37.1 1.0
C A:TRP108 4.9 26.6 1.0
N A:TRP108 4.9 27.6 1.0
N A:TYR76 5.0 25.9 1.0
N A:LYS107 5.0 32.6 1.0

Iron binding site 3 out of 4 in 2hu9

Go back to Iron Binding Sites List in 2hu9
Iron binding site 3 out of 4 in the X-Ray Structure of the Archaeoglobus Fulgidus Copz N- Terminal Domain


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of X-Ray Structure of the Archaeoglobus Fulgidus Copz N- Terminal Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe131

b:24.1
occ:1.00
FE1 B:FES131 0.0 24.1 1.0
SG B:CYS119 2.3 25.9 1.0
S2 B:FES131 2.3 28.1 1.0
S1 B:FES131 2.3 21.1 1.0
SG B:CYS75 2.4 23.6 1.0
FE2 B:FES131 2.9 24.2 1.0
CB B:CYS119 3.3 27.1 1.0
CB B:CYS75 3.3 22.0 1.0
CA B:CYS75 3.5 22.8 1.0
N B:GLY104 3.8 30.5 1.0
N B:CYS119 3.9 26.8 1.0
CA B:GLY104 4.1 32.5 1.0
N B:TYR76 4.1 21.4 1.0
C B:CYS75 4.2 22.0 1.0
CA B:CYS119 4.2 27.0 1.0
N B:CYS77 4.4 22.0 1.0
CB B:CYS77 4.6 23.3 1.0
SG B:CYS77 4.6 23.7 1.0
SG B:CYS109 4.7 28.4 1.0
C B:GLY104 4.7 33.1 1.0
SG B:CYS118 4.8 37.9 1.0
N B:CYS75 4.8 21.9 1.0
O B:VAL74 4.8 22.8 1.0
OD1 B:ASN78 4.8 32.0 1.0

Iron binding site 4 out of 4 in 2hu9

Go back to Iron Binding Sites List in 2hu9
Iron binding site 4 out of 4 in the X-Ray Structure of the Archaeoglobus Fulgidus Copz N- Terminal Domain


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of X-Ray Structure of the Archaeoglobus Fulgidus Copz N- Terminal Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe131

b:24.2
occ:1.00
FE2 B:FES131 0.0 24.2 1.0
S1 B:FES131 2.3 21.1 1.0
SG B:CYS77 2.3 23.7 1.0
SG B:CYS109 2.4 28.4 1.0
S2 B:FES131 2.4 28.1 1.0
FE1 B:FES131 2.9 24.1 1.0
CB B:CYS77 3.4 23.3 1.0
CB B:CYS109 3.5 26.2 1.0
CA B:CYS109 3.8 25.6 1.0
OG1 B:THR112 4.0 23.1 1.0
N B:CYS77 4.0 22.0 1.0
N B:CYS109 4.0 23.6 1.0
CA B:CYS77 4.3 22.5 1.0
SG B:CYS75 4.4 23.6 1.0
CA B:GLY106 4.5 31.7 1.0
C B:GLY106 4.7 30.9 1.0
CA B:CYS118 4.7 29.1 1.0
N B:CYS119 4.8 26.8 1.0
SG B:CYS119 4.8 25.9 1.0
N B:GLY106 4.8 34.2 1.0
C B:TRP108 4.9 24.2 1.0
O B:GLY106 4.9 31.4 1.0
SG B:CYS118 4.9 37.9 1.0
N B:TRP108 4.9 25.5 1.0

Reference:

M.H.Sazinsky, B.Lemoine, M.Orofino, R.Davydov, K.Z.Bencze, T.L.Stemmler, B.M.Hoffman, J.M.Arguello, A.C.Rosenzweig. Characterization and Structure of A ZN2+ and [2FE-2S]-Containing Copper Chaperone From Archaeoglobus Fulgidus. J.Biol.Chem. V. 282 25950 2007.
ISSN: ISSN 0021-9258
PubMed: 17609202
DOI: 10.1074/JBC.M703311200
Page generated: Sun Dec 13 14:46:29 2020

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