Iron in PDB 2hvb: Crystal Structure of Hypothetical Protein PH1083 From Pyrococcus Horikoshii OT3

All present enzymatic activity of Crystal Structure of Hypothetical Protein PH1083 From Pyrococcus Horikoshii OT3:
1.15.1.2;

The structure of Crystal Structure of Hypothetical Protein PH1083 From Pyrococcus Horikoshii OT3, PDB code: 2hvb was solved by H.Yamamoto, N.Kunishima, Riken Structural Genomics/Proteomicsinitiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.47 / 2.50
Space group	P 31
Cell size a, b, c (Å), α, β, γ (°)	62.561, 62.561, 115.254, 90.00, 90.00, 120.00
R / Rfree (%)	20.8 / 21.8

The binding sites of Iron atom in the Crystal Structure of Hypothetical Protein PH1083 From Pyrococcus Horikoshii OT3 (pdb code 2hvb). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of Hypothetical Protein PH1083 From Pyrococcus Horikoshii OT3, PDB code: 2hvb:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Crystal Structure of Hypothetical Protein PH1083 From Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Hypothetical Protein PH1083 From Pyrococcus Horikoshii OT3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:42.5 occ:1.00 NE2 A:HIS25 2.1 40.7 1.0 ND1 A:HIS114 2.1 34.6 1.0 NE2 A:HIS56 2.2 33.1 1.0 SG A:CYS111 2.3 34.5 1.0 NE2 A:HIS50 2.3 29.4 1.0 CE1 A:HIS114 3.0 36.4 1.0 CE1 A:HIS25 3.0 41.2 1.0 OE1 A:GLU23 3.0 60.7 1.0 CE1 A:HIS56 3.1 28.9 1.0 CE1 A:HIS50 3.1 29.9 1.0 CD2 A:HIS25 3.2 43.8 1.0 CG A:HIS114 3.2 34.4 1.0 CD2 A:HIS56 3.2 30.4 1.0 CD2 A:HIS50 3.5 31.4 1.0 CB A:CYS111 3.5 30.6 1.0 CB A:HIS114 3.6 30.1 1.0 CD A:GLU23 4.0 60.6 1.0 ND1 A:HIS25 4.1 43.3 1.0 NE2 A:HIS114 4.1 35.4 1.0 ND1 A:HIS56 4.2 30.3 1.0 CG A:HIS25 4.3 43.7 1.0 CD2 A:HIS114 4.3 35.0 1.0 CG1 A:ILE113 4.3 30.9 1.0 CG A:HIS56 4.3 28.6 1.0 ND1 A:HIS50 4.4 31.0 1.0 CG A:HIS50 4.5 32.4 1.0 N A:HIS114 4.5 28.7 1.0 OE2 A:GLU23 4.7 61.9 1.0 CA A:HIS114 4.7 28.1 1.0 CA A:CYS111 4.8 29.5 1.0 CD1 A:ILE113 4.9 31.4 1.0 CG A:GLU23 4.9 60.4 1.0

Iron binding site 2 out of 4 in the Crystal Structure of Hypothetical Protein PH1083 From Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Hypothetical Protein PH1083 From Pyrococcus Horikoshii OT3 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe202 b:30.1 occ:1.00 ND1 B:HIS114 2.0 31.9 1.0 NE2 B:HIS25 2.1 20.8 1.0 NE2 B:HIS56 2.3 30.1 1.0 NE2 B:HIS50 2.3 25.6 1.0 OE2 B:GLU23 2.5 44.8 1.0 SG B:CYS111 2.5 27.8 1.0 CE1 B:HIS114 2.9 32.2 1.0 CE1 B:HIS56 3.0 30.4 1.0 CE1 B:HIS25 3.0 19.9 1.0 CG B:HIS114 3.1 30.9 1.0 CD2 B:HIS25 3.1 20.0 1.0 CE1 B:HIS50 3.3 25.9 1.0 CD2 B:HIS50 3.3 24.9 1.0 CD2 B:HIS56 3.4 31.0 1.0 CB B:HIS114 3.6 29.9 1.0 CB B:CYS111 3.7 27.0 1.0 CD B:GLU23 3.7 43.8 1.0 NE2 B:HIS114 4.1 31.1 1.0 ND1 B:HIS25 4.2 20.5 1.0 CD2 B:HIS114 4.2 31.2 1.0 ND1 B:HIS56 4.2 31.3 1.0 CG B:HIS25 4.3 22.7 1.0 ND1 B:HIS50 4.4 25.4 1.0 OE1 B:GLU23 4.4 47.1 1.0 CG B:HIS50 4.4 25.9 1.0 CG B:HIS56 4.5 31.1 1.0 CG1 B:ILE113 4.5 28.6 1.0 CG B:GLU23 4.7 42.3 1.0 N B:HIS114 4.8 28.5 1.0 CA B:HIS114 4.8 28.4 1.0 CD1 B:ILE113 4.9 29.3 1.0

Iron binding site 3 out of 4 in the Crystal Structure of Hypothetical Protein PH1083 From Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of Hypothetical Protein PH1083 From Pyrococcus Horikoshii OT3 within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe203 b:35.5 occ:1.00 NE2 C:HIS56 2.1 28.8 1.0 ND1 C:HIS114 2.2 33.9 1.0 NE2 C:HIS25 2.2 37.2 1.0 NE2 C:HIS50 2.3 26.5 1.0 SG C:CYS111 2.5 25.8 1.0 CE1 C:HIS25 2.9 37.9 1.0 CE1 C:HIS114 3.0 35.3 1.0 CE1 C:HIS56 3.0 28.5 1.0 CE1 C:HIS50 3.1 28.9 1.0 CD2 C:HIS56 3.1 27.6 1.0 OE2 C:GLU23 3.2 59.8 1.0 CD2 C:HIS25 3.3 39.6 1.0 CG C:HIS114 3.3 34.1 1.0 CD2 C:HIS50 3.4 29.2 1.0 CB C:CYS111 3.8 24.4 1.0 CB C:HIS114 3.8 31.2 1.0 CD C:GLU23 4.0 61.9 1.0 ND1 C:HIS25 4.1 38.6 1.0 ND1 C:HIS56 4.1 30.1 1.0 NE2 C:HIS114 4.2 34.6 1.0 CG C:HIS56 4.2 28.5 1.0 ND1 C:HIS50 4.3 28.6 1.0 CG1 C:ILE113 4.3 31.2 1.0 CG C:HIS25 4.3 41.5 1.0 CD2 C:HIS114 4.4 34.2 1.0 CG C:HIS50 4.5 29.7 1.0 OE1 C:GLU23 4.6 64.3 1.0 N C:HIS114 4.7 31.3 1.0 CG C:GLU23 4.8 60.6 1.0 CD1 C:ILE113 4.9 29.0 1.0 CA C:HIS114 4.9 29.9 1.0 CD1 C:ILE58 4.9 26.9 1.0

Iron binding site 4 out of 4 in the Crystal Structure of Hypothetical Protein PH1083 From Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of Hypothetical Protein PH1083 From Pyrococcus Horikoshii OT3 within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe204 b:29.2 occ:1.00 OE1 D:GLU23 2.1 45.9 1.0 NE2 D:HIS25 2.1 27.3 1.0 ND1 D:HIS114 2.1 26.5 1.0 NE2 D:HIS50 2.2 24.9 1.0 NE2 D:HIS56 2.3 21.7 1.0 SG D:CYS111 2.5 19.8 1.0 CE1 D:HIS114 3.0 24.6 1.0 CD2 D:HIS25 3.1 26.9 1.0 CE1 D:HIS50 3.1 25.9 1.0 CE1 D:HIS56 3.1 21.0 1.0 CE1 D:HIS25 3.1 27.5 1.0 CG D:HIS114 3.1 26.6 1.0 CD D:GLU23 3.2 47.1 1.0 CD2 D:HIS50 3.3 25.0 1.0 CD2 D:HIS56 3.4 23.2 1.0 CB D:HIS114 3.5 24.2 1.0 CB D:CYS111 3.6 21.2 1.0 OE2 D:GLU23 3.8 52.7 1.0 NE2 D:HIS114 4.1 25.6 1.0 CG D:HIS25 4.2 28.2 1.0 ND1 D:HIS25 4.2 26.8 1.0 CD2 D:HIS114 4.2 26.9 1.0 ND1 D:HIS50 4.2 25.0 1.0 ND1 D:HIS56 4.3 22.6 1.0 CG D:HIS50 4.4 26.9 1.0 CG D:GLU23 4.4 44.9 1.0 CG D:HIS56 4.5 24.9 1.0 CG1 D:ILE113 4.6 23.0 1.0 N D:HIS114 4.7 23.7 1.0 CA D:HIS114 4.7 24.4 1.0 CB D:GLU23 4.9 42.3 1.0 CA D:CYS111 5.0 21.4 1.0 CD1 D:ILE58 5.0 24.0 1.0

H.Yamamoto, N.Kunishima. Crystal Structure of Hypothetical Protein PH1083 From Pyrococcus Horikoshii OT3 To Be Published.