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Iron in PDB 2hy1: Crystal Structure of RV0805

Enzymatic activity of Crystal Structure of RV0805

All present enzymatic activity of Crystal Structure of RV0805:
3.1.4.17;

Protein crystallography data

The structure of Crystal Structure of RV0805, PDB code: 2hy1 was solved by A.R.Shenoy, M.Capuder, P.Draskovic, D.Lamba, S.S.Visweswariah, M.Podobnik, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.90 / 1.93
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 55.263, 94.299, 50.916, 90.00, 90.00, 90.00
R / Rfree (%) 20.3 / 22.8

Other elements in 2hy1:

The structure of Crystal Structure of RV0805 also contains other interesting chemical elements:

Manganese (Mn) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of RV0805 (pdb code 2hy1). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of RV0805, PDB code: 2hy1:

Iron binding site 1 out of 1 in 2hy1

Go back to Iron Binding Sites List in 2hy1
Iron binding site 1 out of 1 in the Crystal Structure of RV0805


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of RV0805 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe444

b:31.0
occ:0.50
O A:HOH768 2.0 57.0 1.0
OD2 A:ASP21 2.0 29.6 1.0
OD2 A:ASP63 2.2 29.8 1.0
NE2 A:HIS23 2.3 26.8 1.0
NE2 A:HIS209 2.3 24.5 1.0
O3 A:PO4666 2.3 32.0 0.5
CG A:ASP63 3.1 28.9 1.0
CE1 A:HIS23 3.2 26.8 1.0
CG A:ASP21 3.2 26.9 1.0
CD2 A:HIS209 3.3 24.9 1.0
CE1 A:HIS209 3.3 24.8 1.0
CB A:ASP63 3.3 28.8 1.0
P A:PO4666 3.4 34.2 0.5
CD2 A:HIS23 3.4 26.6 1.0
O4 A:PO4666 3.5 32.8 0.5
MN A:MN555 3.5 37.5 1.0
CB A:ASP21 3.7 25.9 1.0
O1 A:PO4666 3.8 33.3 0.5
OD1 A:ASP21 4.2 27.6 1.0
OD1 A:ASP63 4.2 28.2 1.0
ND1 A:HIS23 4.3 26.3 1.0
CD2 A:HIS98 4.4 30.6 1.0
ND1 A:HIS209 4.4 24.5 1.0
CG A:HIS209 4.4 24.8 1.0
CG A:HIS23 4.5 26.1 1.0
O A:HIS207 4.5 23.6 1.0
CA A:ASP21 4.5 25.8 1.0
CE1 A:HIS169 4.5 24.8 1.0
NE2 A:HIS169 4.6 24.6 1.0
O2 A:PO4666 4.7 33.0 0.5
CA A:HIS207 4.7 23.1 1.0
NE2 A:HIS98 4.8 30.8 1.0
CA A:ASP63 4.9 28.8 1.0
C A:HIS207 5.0 23.3 1.0

Reference:

A.R.Shenoy, M.Capuder, P.Draskovic, D.Lamba, S.S.Visweswariah, M.Podobnik. Structural and Biochemical Analysis of the RV0805 Cyclic Nucleotide Phosphodiesterase From Mycobacterium Tuberculosis. J.Mol.Biol. V. 365 211 2007.
ISSN: ISSN 0022-2836
PubMed: 17059828
DOI: 10.1016/J.JMB.2006.10.005
Page generated: Thu Jul 17 02:11:04 2025

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