Atomistry » Iron » PDB 2hkx-2ibn » 2hz3
Atomistry »
  Iron »
    PDB 2hkx-2ibn »
      2hz3 »

Iron in PDB 2hz3: The X-Ray Crystal Structure of Ferrous Synechocystis Hemoglobin H117A Mutant with A Covalent Linkage

Protein crystallography data

The structure of The X-Ray Crystal Structure of Ferrous Synechocystis Hemoglobin H117A Mutant with A Covalent Linkage, PDB code: 2hz3 was solved by J.A.Hoy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.53 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 43.819, 46.919, 62.089, 90.00, 90.00, 90.00
R / Rfree (%) 19.4 / 24

Other elements in 2hz3:

The structure of The X-Ray Crystal Structure of Ferrous Synechocystis Hemoglobin H117A Mutant with A Covalent Linkage also contains other interesting chemical elements:

Cadmium (Cd) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the The X-Ray Crystal Structure of Ferrous Synechocystis Hemoglobin H117A Mutant with A Covalent Linkage (pdb code 2hz3). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the The X-Ray Crystal Structure of Ferrous Synechocystis Hemoglobin H117A Mutant with A Covalent Linkage, PDB code: 2hz3:

Iron binding site 1 out of 1 in 2hz3

Go back to Iron Binding Sites List in 2hz3
Iron binding site 1 out of 1 in the The X-Ray Crystal Structure of Ferrous Synechocystis Hemoglobin H117A Mutant with A Covalent Linkage


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The X-Ray Crystal Structure of Ferrous Synechocystis Hemoglobin H117A Mutant with A Covalent Linkage within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe129

b:13.7
occ:1.00
FE A:HEM129 0.0 13.7 1.0
NB A:HEM129 1.9 12.9 1.0
ND A:HEM129 1.9 13.1 1.0
NA A:HEM129 2.0 14.8 1.0
NC A:HEM129 2.0 11.4 1.0
NE2 A:HIS46 2.0 9.4 1.0
NE2 A:HIS70 2.2 12.0 1.0
C1D A:HEM129 2.9 9.9 1.0
CD2 A:HIS46 2.9 14.2 1.0
C4B A:HEM129 3.0 14.1 1.0
C4A A:HEM129 3.0 14.9 1.0
C4D A:HEM129 3.0 15.4 1.0
C4C A:HEM129 3.0 9.5 1.0
C1C A:HEM129 3.0 10.2 1.0
C1B A:HEM129 3.0 14.2 1.0
CE1 A:HIS46 3.0 13.3 1.0
C1A A:HEM129 3.0 15.6 1.0
CD2 A:HIS70 3.1 9.7 1.0
CE1 A:HIS70 3.3 15.2 1.0
CHD A:HEM129 3.3 11.5 1.0
CHB A:HEM129 3.3 13.7 1.0
CHC A:HEM129 3.4 12.4 1.0
CHA A:HEM129 3.4 13.8 1.0
CG A:HIS46 4.1 13.4 1.0
ND1 A:HIS46 4.1 10.3 1.0
C2D A:HEM129 4.2 15.5 1.0
C3B A:HEM129 4.2 14.6 1.0
C3D A:HEM129 4.2 15.4 1.0
C3C A:HEM129 4.2 13.6 1.0
C2B A:HEM129 4.2 14.2 1.0
C3A A:HEM129 4.2 17.2 1.0
C2A A:HEM129 4.2 15.6 1.0
C2C A:HEM129 4.2 12.2 1.0
CG A:HIS70 4.3 11.7 1.0
ND1 A:HIS70 4.3 12.8 1.0

Reference:

J.A.Hoy, B.J.Smagghe, P.Halder, M.S.Hargrove. Covalent Heme Attachment in Synechocystis Hemoglobin Is Required to Prevent Ferrous Heme Dissociation Protein Sci. V. 16 250 2007.
ISSN: ISSN 0961-8368
PubMed: 17242429
DOI: 10.1110/PS.062572607
Page generated: Sat Aug 3 23:13:01 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy