Iron in PDB 2inn: Structure of the Phenol Hydroxyalse-Regulatory Protein Complex
Protein crystallography data
The structure of Structure of the Phenol Hydroxyalse-Regulatory Protein Complex, PDB code: 2inn
was solved by
M.H.Sazinsky,
P.W.Dunten,
M.S.Mccormick,
S.J.Lippard,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
30.00 /
2.70
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
87.453,
146.925,
189.787,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
20.2 /
25.2
|
Other elements in 2inn:
The structure of Structure of the Phenol Hydroxyalse-Regulatory Protein Complex also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Structure of the Phenol Hydroxyalse-Regulatory Protein Complex
(pdb code 2inn). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the
Structure of the Phenol Hydroxyalse-Regulatory Protein Complex, PDB code: 2inn:
Jump to Iron binding site number:
1;
2;
3;
4;
Iron binding site 1 out
of 4 in 2inn
Go back to
Iron Binding Sites List in 2inn
Iron binding site 1 out
of 4 in the Structure of the Phenol Hydroxyalse-Regulatory Protein Complex
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Structure of the Phenol Hydroxyalse-Regulatory Protein Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe512
b:35.7
occ:1.00
|
OE2
|
A:GLU233
|
2.1
|
42.7
|
1.0
|
OE2
|
A:GLU199
|
2.1
|
41.5
|
1.0
|
ND1
|
A:HIS236
|
2.2
|
33.6
|
1.0
|
OE1
|
A:GLU199
|
2.3
|
42.0
|
1.0
|
CD
|
A:GLU199
|
2.6
|
37.6
|
1.0
|
OE1
|
A:GLU138
|
2.6
|
23.2
|
1.0
|
CE1
|
A:HIS236
|
3.0
|
32.0
|
1.0
|
FE
|
A:FE513
|
3.1
|
37.9
|
1.0
|
CD
|
A:GLU233
|
3.1
|
43.4
|
1.0
|
O
|
A:HOH593
|
3.4
|
26.5
|
1.0
|
CG
|
A:HIS236
|
3.4
|
29.7
|
1.0
|
CD
|
A:GLU138
|
3.4
|
26.4
|
1.0
|
OE1
|
A:GLU233
|
3.4
|
47.9
|
1.0
|
OE2
|
A:GLU138
|
3.5
|
32.0
|
1.0
|
CE1
|
A:HIS141
|
3.7
|
28.0
|
1.0
|
CB
|
A:HIS236
|
3.9
|
28.4
|
1.0
|
NE2
|
A:GLN134
|
4.0
|
28.2
|
1.0
|
ND1
|
A:HIS141
|
4.1
|
28.8
|
1.0
|
CG
|
A:GLU199
|
4.1
|
36.8
|
1.0
|
O
|
A:HOH517
|
4.1
|
16.7
|
1.0
|
NE2
|
A:HIS236
|
4.2
|
26.3
|
1.0
|
CD2
|
A:HIS236
|
4.4
|
27.4
|
1.0
|
CG
|
A:GLU233
|
4.6
|
34.1
|
1.0
|
O
|
A:HOH569
|
4.7
|
29.2
|
1.0
|
CG
|
A:GLU138
|
4.8
|
19.3
|
1.0
|
NE2
|
A:HIS141
|
4.9
|
23.7
|
1.0
|
CA
|
A:GLU233
|
4.9
|
29.6
|
1.0
|
CD
|
A:GLN134
|
5.0
|
29.2
|
1.0
|
CB
|
A:GLU199
|
5.0
|
35.1
|
1.0
|
|
Iron binding site 2 out
of 4 in 2inn
Go back to
Iron Binding Sites List in 2inn
Iron binding site 2 out
of 4 in the Structure of the Phenol Hydroxyalse-Regulatory Protein Complex
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Structure of the Phenol Hydroxyalse-Regulatory Protein Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe513
b:37.9
occ:1.00
|
O
|
A:HOH593
|
1.9
|
26.5
|
1.0
|
OE2
|
A:GLU138
|
2.1
|
32.0
|
1.0
|
OE2
|
A:GLU108
|
2.1
|
33.4
|
1.0
|
ND1
|
A:HIS141
|
2.1
|
28.8
|
1.0
|
O
|
A:HOH517
|
2.5
|
16.7
|
1.0
|
CD
|
A:GLU108
|
2.8
|
28.9
|
1.0
|
OE1
|
A:GLU108
|
2.8
|
32.1
|
1.0
|
CE1
|
A:HIS141
|
2.9
|
28.0
|
1.0
|
CD
|
A:GLU138
|
3.1
|
26.4
|
1.0
|
FE
|
A:FE512
|
3.1
|
35.7
|
1.0
|
CG
|
A:HIS141
|
3.2
|
27.2
|
1.0
|
OE1
|
A:GLU138
|
3.3
|
23.2
|
1.0
|
CB
|
A:HIS141
|
3.7
|
22.7
|
1.0
|
OE1
|
A:GLU199
|
3.9
|
42.0
|
1.0
|
OE1
|
A:GLU233
|
3.9
|
47.9
|
1.0
|
NE2
|
A:HIS141
|
4.1
|
23.7
|
1.0
|
CG
|
A:GLU108
|
4.3
|
26.0
|
1.0
|
OE2
|
A:GLU233
|
4.3
|
42.7
|
1.0
|
CD2
|
A:HIS141
|
4.3
|
22.0
|
1.0
|
CG
|
A:GLU138
|
4.4
|
19.3
|
1.0
|
CD
|
A:GLU233
|
4.5
|
43.4
|
1.0
|
CA
|
A:GLU138
|
4.7
|
21.4
|
1.0
|
CB
|
A:GLU138
|
4.8
|
20.4
|
1.0
|
CE1
|
A:HIS236
|
4.8
|
32.0
|
1.0
|
CD
|
A:GLU199
|
4.8
|
37.6
|
1.0
|
ND1
|
A:HIS236
|
4.8
|
33.6
|
1.0
|
OE2
|
A:GLU199
|
4.9
|
41.5
|
1.0
|
CB
|
A:GLU108
|
5.0
|
24.9
|
1.0
|
|
Iron binding site 3 out
of 4 in 2inn
Go back to
Iron Binding Sites List in 2inn
Iron binding site 3 out
of 4 in the Structure of the Phenol Hydroxyalse-Regulatory Protein Complex
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Structure of the Phenol Hydroxyalse-Regulatory Protein Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe512
b:28.8
occ:1.00
|
OE1
|
B:GLU108
|
2.1
|
31.0
|
1.0
|
OE2
|
B:GLU138
|
2.2
|
32.9
|
1.0
|
ND1
|
B:HIS141
|
2.2
|
31.9
|
1.0
|
O
|
B:HOH526
|
2.6
|
37.4
|
1.0
|
CD
|
B:GLU138
|
2.8
|
27.0
|
1.0
|
OE1
|
B:GLU138
|
2.9
|
31.6
|
1.0
|
CE1
|
B:HIS141
|
2.9
|
34.9
|
1.0
|
FE
|
B:FE513
|
3.0
|
47.6
|
1.0
|
OE1
|
B:GLU233
|
3.0
|
49.8
|
1.0
|
CD
|
B:GLU108
|
3.0
|
30.9
|
1.0
|
O
|
B:HOH525
|
3.1
|
18.8
|
1.0
|
CG
|
B:HIS141
|
3.3
|
30.6
|
1.0
|
OE2
|
B:GLU108
|
3.3
|
29.0
|
1.0
|
CB
|
B:HIS141
|
3.9
|
26.8
|
1.0
|
NE2
|
B:HIS141
|
4.1
|
26.1
|
1.0
|
CG
|
B:GLU138
|
4.2
|
24.7
|
1.0
|
CD
|
B:GLU233
|
4.2
|
48.6
|
1.0
|
CD2
|
B:HIS141
|
4.3
|
29.9
|
1.0
|
CG
|
B:GLU108
|
4.4
|
25.4
|
1.0
|
OE1
|
B:GLU199
|
4.4
|
49.4
|
1.0
|
CA
|
B:GLU138
|
4.7
|
26.0
|
1.0
|
CB
|
B:GLU138
|
4.7
|
26.6
|
1.0
|
CB
|
B:GLU108
|
4.8
|
23.3
|
1.0
|
CE1
|
B:HIS236
|
4.9
|
44.6
|
1.0
|
ND1
|
B:HIS236
|
4.9
|
43.5
|
1.0
|
|
Iron binding site 4 out
of 4 in 2inn
Go back to
Iron Binding Sites List in 2inn
Iron binding site 4 out
of 4 in the Structure of the Phenol Hydroxyalse-Regulatory Protein Complex
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Structure of the Phenol Hydroxyalse-Regulatory Protein Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe513
b:47.6
occ:1.00
|
OE1
|
B:GLU233
|
1.7
|
49.8
|
1.0
|
OE1
|
B:GLU199
|
2.0
|
49.4
|
1.0
|
OE1
|
B:GLU138
|
2.2
|
31.6
|
1.0
|
CD
|
B:GLU233
|
2.5
|
48.6
|
1.0
|
ND1
|
B:HIS236
|
2.5
|
43.5
|
1.0
|
OE2
|
B:GLU233
|
2.6
|
44.8
|
1.0
|
FE
|
B:FE512
|
3.0
|
28.8
|
1.0
|
CD
|
B:GLU199
|
3.1
|
45.9
|
1.0
|
CE1
|
B:HIS236
|
3.2
|
44.6
|
1.0
|
CD
|
B:GLU138
|
3.2
|
27.0
|
1.0
|
CG
|
B:HIS236
|
3.5
|
44.2
|
1.0
|
CG
|
B:GLU199
|
3.6
|
40.5
|
1.0
|
OE2
|
B:GLU138
|
3.7
|
32.9
|
1.0
|
O
|
B:HOH525
|
3.8
|
18.8
|
1.0
|
NE2
|
B:GLN134
|
3.8
|
45.5
|
1.0
|
CB
|
B:HIS236
|
3.9
|
43.8
|
1.0
|
CG
|
B:GLU233
|
3.9
|
47.8
|
1.0
|
CE1
|
B:HIS141
|
4.0
|
34.9
|
1.0
|
OE2
|
B:GLU199
|
4.2
|
48.0
|
1.0
|
ND1
|
B:HIS141
|
4.2
|
31.9
|
1.0
|
NE2
|
B:HIS236
|
4.3
|
41.1
|
1.0
|
CG
|
B:GLU138
|
4.4
|
24.7
|
1.0
|
CD2
|
B:HIS236
|
4.5
|
44.5
|
1.0
|
O
|
B:HOH526
|
4.6
|
37.4
|
1.0
|
OE1
|
B:GLU108
|
4.8
|
31.0
|
1.0
|
CA
|
B:GLU233
|
4.9
|
45.5
|
1.0
|
CB
|
B:GLU233
|
5.0
|
45.4
|
1.0
|
CD
|
B:GLN134
|
5.0
|
45.7
|
1.0
|
|
Reference:
M.H.Sazinsky,
P.W.Dunten,
M.S.Mccormick,
A.Didonato,
S.J.Lippard.
X-Ray Structure of A Hydroxylase-Regulatory Protein Complex From A Hydrocarbon-Oxidizing Multicomponent Monooxygenase, Pseudomonas Sp. OX1 Phenol Hydroxylase. Biochemistry V. 45 15392 2006.
ISSN: ISSN 0006-2960
PubMed: 17176061
DOI: 10.1021/BI0618969
Page generated: Sat Aug 3 23:23:09 2024
|