Iron in PDB 2j7a: Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex From Desulfovibrio Vulgaris
Protein crystallography data
The structure of Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex From Desulfovibrio Vulgaris, PDB code: 2j7a
was solved by
M.L.Rodrigues,
T.F.Oliveira,
I.A.C.Pereira,
M.Archer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
288.67 /
2.30
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
79.664,
258.117,
580.742,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
20.1 /
24
|
Other elements in 2j7a:
The structure of Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex From Desulfovibrio Vulgaris also contains other interesting chemical elements:
Iron Binding Sites:
Iron binding site 1 out
of 84 in 2j7a
Go back to
Iron Binding Sites List in 2j7a
Iron binding site 1 out
of 84 in the Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex From Desulfovibrio Vulgaris
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex From Desulfovibrio Vulgaris within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1001
b:11.3
occ:1.00
|
FE
|
A:HEC1001
|
0.0
|
11.3
|
1.0
|
NC
|
A:HEC1001
|
2.0
|
7.7
|
1.0
|
NA
|
A:HEC1001
|
2.0
|
8.8
|
1.0
|
NB
|
A:HEC1001
|
2.1
|
8.9
|
1.0
|
ND
|
A:HEC1001
|
2.1
|
7.9
|
1.0
|
NZ
|
A:LYS151
|
2.3
|
5.7
|
1.0
|
O
|
A:HOH2103
|
2.9
|
26.9
|
1.0
|
C4C
|
A:HEC1001
|
3.0
|
6.0
|
1.0
|
C1A
|
A:HEC1001
|
3.0
|
9.3
|
1.0
|
C1C
|
A:HEC1001
|
3.0
|
7.8
|
1.0
|
C4A
|
A:HEC1001
|
3.1
|
8.9
|
1.0
|
C4B
|
A:HEC1001
|
3.1
|
7.2
|
1.0
|
C4D
|
A:HEC1001
|
3.1
|
7.1
|
1.0
|
C1B
|
A:HEC1001
|
3.1
|
8.1
|
1.0
|
C1D
|
A:HEC1001
|
3.1
|
6.8
|
1.0
|
CE
|
A:LYS151
|
3.2
|
9.1
|
1.0
|
CHD
|
A:HEC1001
|
3.4
|
5.8
|
1.0
|
CHA
|
A:HEC1001
|
3.4
|
6.7
|
1.0
|
CHC
|
A:HEC1001
|
3.4
|
7.1
|
1.0
|
CHB
|
A:HEC1001
|
3.5
|
9.0
|
1.0
|
C3C
|
A:HEC1001
|
4.2
|
4.4
|
1.0
|
C2C
|
A:HEC1001
|
4.3
|
6.9
|
1.0
|
C2A
|
A:HEC1001
|
4.3
|
9.2
|
1.0
|
C3A
|
A:HEC1001
|
4.3
|
8.6
|
1.0
|
C3B
|
A:HEC1001
|
4.3
|
7.3
|
1.0
|
C2B
|
A:HEC1001
|
4.3
|
7.3
|
1.0
|
C3D
|
A:HEC1001
|
4.4
|
5.8
|
1.0
|
C2D
|
A:HEC1001
|
4.4
|
4.9
|
1.0
|
NE2
|
A:HIS298
|
4.4
|
9.4
|
1.0
|
O
|
A:HOH2054
|
4.5
|
11.1
|
1.0
|
CD
|
A:LYS151
|
4.6
|
7.1
|
1.0
|
O
|
A:HOH2079
|
4.7
|
22.2
|
1.0
|
CMD
|
A:HEC1003
|
4.9
|
6.9
|
1.0
|
|
Iron binding site 2 out
of 84 in 2j7a
Go back to
Iron Binding Sites List in 2j7a
Iron binding site 2 out
of 84 in the Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex From Desulfovibrio Vulgaris
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex From Desulfovibrio Vulgaris within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1002
b:10.2
occ:1.00
|
FE
|
A:HEC1002
|
0.0
|
10.2
|
1.0
|
NA
|
A:HEC1002
|
2.0
|
10.1
|
1.0
|
NC
|
A:HEC1002
|
2.0
|
9.4
|
1.0
|
NE2
|
A:HIS335
|
2.1
|
6.8
|
1.0
|
ND
|
A:HEC1002
|
2.1
|
8.7
|
1.0
|
NB
|
A:HEC1002
|
2.1
|
9.0
|
1.0
|
NE2
|
A:HIS191
|
2.1
|
12.0
|
1.0
|
C1A
|
A:HEC1002
|
3.0
|
10.2
|
1.0
|
C4D
|
A:HEC1002
|
3.0
|
8.8
|
1.0
|
CE1
|
A:HIS191
|
3.0
|
12.8
|
1.0
|
C1C
|
A:HEC1002
|
3.1
|
8.3
|
1.0
|
C4A
|
A:HEC1002
|
3.1
|
9.8
|
1.0
|
CD2
|
A:HIS335
|
3.1
|
4.9
|
1.0
|
C4C
|
A:HEC1002
|
3.1
|
9.9
|
1.0
|
CE1
|
A:HIS335
|
3.1
|
5.2
|
1.0
|
C4B
|
A:HEC1002
|
3.1
|
9.2
|
1.0
|
C1B
|
A:HEC1002
|
3.1
|
9.5
|
1.0
|
C1D
|
A:HEC1002
|
3.2
|
8.7
|
1.0
|
CD2
|
A:HIS191
|
3.2
|
11.2
|
1.0
|
CHA
|
A:HEC1002
|
3.3
|
9.8
|
1.0
|
CHC
|
A:HEC1002
|
3.4
|
9.5
|
1.0
|
CHB
|
A:HEC1002
|
3.5
|
9.5
|
1.0
|
CHD
|
A:HEC1002
|
3.5
|
8.6
|
1.0
|
ND1
|
A:HIS191
|
4.2
|
12.0
|
1.0
|
ND1
|
A:HIS335
|
4.2
|
5.8
|
1.0
|
CG
|
A:HIS335
|
4.2
|
7.1
|
1.0
|
C2A
|
A:HEC1002
|
4.2
|
8.9
|
1.0
|
C3A
|
A:HEC1002
|
4.2
|
10.8
|
1.0
|
C3C
|
A:HEC1002
|
4.3
|
9.3
|
1.0
|
CG
|
A:HIS191
|
4.3
|
12.5
|
1.0
|
C2C
|
A:HEC1002
|
4.3
|
8.7
|
1.0
|
C3B
|
A:HEC1002
|
4.3
|
9.7
|
1.0
|
C2B
|
A:HEC1002
|
4.3
|
10.4
|
1.0
|
C3D
|
A:HEC1002
|
4.3
|
8.0
|
1.0
|
C2D
|
A:HEC1002
|
4.4
|
8.0
|
1.0
|
CE
|
A:MET321
|
4.6
|
6.3
|
1.0
|
|
Iron binding site 3 out
of 84 in 2j7a
Go back to
Iron Binding Sites List in 2j7a
Iron binding site 3 out
of 84 in the Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex From Desulfovibrio Vulgaris
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex From Desulfovibrio Vulgaris within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1003
b:9.0
occ:1.00
|
FE
|
A:HEC1003
|
0.0
|
9.0
|
1.0
|
ND
|
A:HEC1003
|
1.9
|
7.0
|
1.0
|
NE2
|
A:HIS121
|
2.0
|
15.2
|
1.0
|
NC
|
A:HEC1003
|
2.0
|
7.6
|
1.0
|
NA
|
A:HEC1003
|
2.1
|
6.1
|
1.0
|
NB
|
A:HEC1003
|
2.1
|
6.1
|
1.0
|
NE2
|
A:HIS233
|
2.2
|
5.0
|
1.0
|
C1D
|
A:HEC1003
|
2.9
|
7.6
|
1.0
|
CE1
|
A:HIS121
|
2.9
|
15.4
|
1.0
|
C4C
|
A:HEC1003
|
3.0
|
7.7
|
1.0
|
C4D
|
A:HEC1003
|
3.0
|
8.7
|
1.0
|
CD2
|
A:HIS121
|
3.1
|
14.2
|
1.0
|
C1A
|
A:HEC1003
|
3.1
|
8.0
|
1.0
|
C4A
|
A:HEC1003
|
3.1
|
6.2
|
1.0
|
CE1
|
A:HIS233
|
3.1
|
4.2
|
1.0
|
C1C
|
A:HEC1003
|
3.1
|
8.0
|
1.0
|
C1B
|
A:HEC1003
|
3.1
|
4.8
|
1.0
|
C4B
|
A:HEC1003
|
3.2
|
6.0
|
1.0
|
CD2
|
A:HIS233
|
3.2
|
6.9
|
1.0
|
CHD
|
A:HEC1003
|
3.3
|
6.1
|
1.0
|
CHA
|
A:HEC1003
|
3.4
|
7.2
|
1.0
|
CHB
|
A:HEC1003
|
3.5
|
5.0
|
1.0
|
CHC
|
A:HEC1003
|
3.5
|
5.4
|
1.0
|
ND1
|
A:HIS121
|
4.1
|
13.2
|
1.0
|
CG
|
A:HIS121
|
4.2
|
13.3
|
1.0
|
C2D
|
A:HEC1003
|
4.2
|
8.0
|
1.0
|
C3D
|
A:HEC1003
|
4.2
|
8.3
|
1.0
|
C3C
|
A:HEC1003
|
4.2
|
6.7
|
1.0
|
ND1
|
A:HIS233
|
4.3
|
3.4
|
1.0
|
C2C
|
A:HEC1003
|
4.3
|
6.3
|
1.0
|
C2A
|
A:HEC1003
|
4.3
|
7.3
|
1.0
|
C3A
|
A:HEC1003
|
4.3
|
6.0
|
1.0
|
CG
|
A:HIS233
|
4.3
|
5.3
|
1.0
|
C3B
|
A:HEC1003
|
4.4
|
3.3
|
1.0
|
C2B
|
A:HEC1003
|
4.4
|
3.1
|
1.0
|
O
|
A:HOH2035
|
4.7
|
9.1
|
1.0
|
CMD
|
A:HEC1001
|
4.9
|
2.6
|
1.0
|
|
Iron binding site 4 out
of 84 in 2j7a
Go back to
Iron Binding Sites List in 2j7a
Iron binding site 4 out
of 84 in the Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex From Desulfovibrio Vulgaris
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex From Desulfovibrio Vulgaris within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1004
b:7.6
occ:1.00
|
FE
|
A:HEC1004
|
0.0
|
7.6
|
1.0
|
NA
|
A:HEC1004
|
2.0
|
7.6
|
1.0
|
NC
|
A:HEC1004
|
2.0
|
4.2
|
1.0
|
NE2
|
A:HIS320
|
2.1
|
4.5
|
1.0
|
NB
|
A:HEC1004
|
2.1
|
5.1
|
1.0
|
ND
|
A:HEC1004
|
2.1
|
6.0
|
1.0
|
NE2
|
A:HIS434
|
2.2
|
9.9
|
1.0
|
C1A
|
A:HEC1004
|
3.0
|
7.6
|
1.0
|
CE1
|
A:HIS434
|
3.0
|
8.7
|
1.0
|
CD2
|
A:HIS320
|
3.0
|
6.7
|
1.0
|
C4C
|
A:HEC1004
|
3.0
|
3.3
|
1.0
|
C4A
|
A:HEC1004
|
3.1
|
7.1
|
1.0
|
C4D
|
A:HEC1004
|
3.1
|
6.4
|
1.0
|
CE1
|
A:HIS320
|
3.1
|
7.1
|
1.0
|
C1C
|
A:HEC1004
|
3.1
|
3.2
|
1.0
|
C1B
|
A:HEC1004
|
3.1
|
4.8
|
1.0
|
C4B
|
A:HEC1004
|
3.1
|
4.7
|
1.0
|
C1D
|
A:HEC1004
|
3.1
|
4.5
|
1.0
|
CD2
|
A:HIS434
|
3.3
|
8.0
|
1.0
|
CHA
|
A:HEC1004
|
3.3
|
5.2
|
1.0
|
CHD
|
A:HEC1004
|
3.4
|
4.2
|
1.0
|
CHB
|
A:HEC1004
|
3.5
|
4.3
|
1.0
|
CHC
|
A:HEC1004
|
3.5
|
3.6
|
1.0
|
ND1
|
A:HIS320
|
4.1
|
5.4
|
1.0
|
CG
|
A:HIS320
|
4.2
|
7.0
|
1.0
|
ND1
|
A:HIS434
|
4.2
|
9.6
|
1.0
|
C2A
|
A:HEC1004
|
4.2
|
6.6
|
1.0
|
C3A
|
A:HEC1004
|
4.2
|
5.0
|
1.0
|
C3C
|
A:HEC1004
|
4.3
|
3.8
|
1.0
|
C2C
|
A:HEC1004
|
4.3
|
2.8
|
1.0
|
C3D
|
A:HEC1004
|
4.3
|
3.8
|
1.0
|
C2B
|
A:HEC1004
|
4.3
|
4.1
|
1.0
|
C3B
|
A:HEC1004
|
4.3
|
5.5
|
1.0
|
C2D
|
A:HEC1004
|
4.3
|
4.7
|
1.0
|
CG
|
A:HIS434
|
4.4
|
8.6
|
1.0
|
|
Iron binding site 5 out
of 84 in 2j7a
Go back to
Iron Binding Sites List in 2j7a
Iron binding site 5 out
of 84 in the Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex From Desulfovibrio Vulgaris
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex From Desulfovibrio Vulgaris within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe1005
b:8.7
occ:1.00
|
FE
|
A:HEC1005
|
0.0
|
8.7
|
1.0
|
NB
|
A:HEC1005
|
2.0
|
6.0
|
1.0
|
NC
|
A:HEC1005
|
2.0
|
6.0
|
1.0
|
NA
|
A:HEC1005
|
2.1
|
7.6
|
1.0
|
ND
|
A:HEC1005
|
2.1
|
5.1
|
1.0
|
NE2
|
A:HIS309
|
2.1
|
6.7
|
1.0
|
NE2
|
A:HIS353
|
2.1
|
7.4
|
1.0
|
CE1
|
A:HIS353
|
3.0
|
9.5
|
1.0
|
C4B
|
A:HEC1005
|
3.0
|
8.1
|
1.0
|
C1C
|
A:HEC1005
|
3.0
|
5.4
|
1.0
|
CD2
|
A:HIS309
|
3.0
|
5.0
|
1.0
|
C4D
|
A:HEC1005
|
3.1
|
6.8
|
1.0
|
C1D
|
A:HEC1005
|
3.1
|
5.2
|
1.0
|
C4C
|
A:HEC1005
|
3.1
|
5.9
|
1.0
|
C1A
|
A:HEC1005
|
3.1
|
8.8
|
1.0
|
C1B
|
A:HEC1005
|
3.1
|
7.2
|
1.0
|
C4A
|
A:HEC1005
|
3.1
|
8.2
|
1.0
|
CE1
|
A:HIS309
|
3.1
|
4.9
|
1.0
|
CD2
|
A:HIS353
|
3.2
|
8.0
|
1.0
|
CHC
|
A:HEC1005
|
3.4
|
5.2
|
1.0
|
CHA
|
A:HEC1005
|
3.4
|
6.3
|
1.0
|
CHD
|
A:HEC1005
|
3.5
|
4.5
|
1.0
|
CHB
|
A:HEC1005
|
3.5
|
7.4
|
1.0
|
ND1
|
A:HIS353
|
4.2
|
9.2
|
1.0
|
CG
|
A:HIS309
|
4.2
|
6.4
|
1.0
|
ND1
|
A:HIS309
|
4.2
|
5.2
|
1.0
|
C2C
|
A:HEC1005
|
4.3
|
4.3
|
1.0
|
C3D
|
A:HEC1005
|
4.3
|
7.5
|
1.0
|
CG
|
A:HIS353
|
4.3
|
8.9
|
1.0
|
C3B
|
A:HEC1005
|
4.3
|
7.4
|
1.0
|
C2D
|
A:HEC1005
|
4.3
|
5.5
|
1.0
|
C3C
|
A:HEC1005
|
4.3
|
4.5
|
1.0
|
C2B
|
A:HEC1005
|
4.3
|
7.0
|
1.0
|
C2A
|
A:HEC1005
|
4.3
|
9.7
|
1.0
|
C3A
|
A:HEC1005
|
4.3
|
9.1
|
1.0
|
CBC
|
A:HEC1004
|
4.8
|
7.8
|
1.0
|
|
Iron binding site 6 out
of 84 in 2j7a
Go back to
Iron Binding Sites List in 2j7a
Iron binding site 6 out
of 84 in the Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex From Desulfovibrio Vulgaris
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex From Desulfovibrio Vulgaris within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1001
b:11.4
occ:1.00
|
FE
|
B:HEC1001
|
0.0
|
11.4
|
1.0
|
NA
|
B:HEC1001
|
2.1
|
10.3
|
1.0
|
NC
|
B:HEC1001
|
2.1
|
9.2
|
1.0
|
NB
|
B:HEC1001
|
2.1
|
10.2
|
1.0
|
NZ
|
B:LYS151
|
2.2
|
12.4
|
1.0
|
ND
|
B:HEC1001
|
2.2
|
10.4
|
1.0
|
O
|
B:HOH2178
|
2.6
|
18.2
|
1.0
|
C4A
|
B:HEC1001
|
3.0
|
11.9
|
1.0
|
C1B
|
B:HEC1001
|
3.1
|
10.3
|
1.0
|
C4C
|
B:HEC1001
|
3.1
|
9.4
|
1.0
|
C4B
|
B:HEC1001
|
3.1
|
10.6
|
1.0
|
C1C
|
B:HEC1001
|
3.1
|
10.0
|
1.0
|
C1A
|
B:HEC1001
|
3.1
|
11.8
|
1.0
|
C1D
|
B:HEC1001
|
3.2
|
8.7
|
1.0
|
C4D
|
B:HEC1001
|
3.2
|
9.8
|
1.0
|
CE
|
B:LYS151
|
3.3
|
12.0
|
1.0
|
CHB
|
B:HEC1001
|
3.4
|
10.1
|
1.0
|
CHD
|
B:HEC1001
|
3.4
|
8.3
|
1.0
|
CHC
|
B:HEC1001
|
3.5
|
10.0
|
1.0
|
CHA
|
B:HEC1001
|
3.5
|
9.6
|
1.0
|
O
|
B:HOH2046
|
4.1
|
11.7
|
1.0
|
C2B
|
B:HEC1001
|
4.3
|
10.5
|
1.0
|
C3A
|
B:HEC1001
|
4.3
|
11.4
|
1.0
|
C3B
|
B:HEC1001
|
4.3
|
10.1
|
1.0
|
C2A
|
B:HEC1001
|
4.3
|
11.2
|
1.0
|
C3C
|
B:HEC1001
|
4.3
|
8.7
|
1.0
|
C2C
|
B:HEC1001
|
4.3
|
8.7
|
1.0
|
C2D
|
B:HEC1001
|
4.4
|
9.6
|
1.0
|
C3D
|
B:HEC1001
|
4.4
|
10.5
|
1.0
|
CE1
|
B:HIS298
|
4.5
|
6.2
|
1.0
|
CD
|
B:LYS151
|
4.6
|
12.3
|
1.0
|
O
|
B:HOH2179
|
4.8
|
8.9
|
1.0
|
O
|
B:HOH2083
|
4.9
|
23.1
|
1.0
|
CMD
|
B:HEC1003
|
5.0
|
6.7
|
1.0
|
|
Iron binding site 7 out
of 84 in 2j7a
Go back to
Iron Binding Sites List in 2j7a
Iron binding site 7 out
of 84 in the Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex From Desulfovibrio Vulgaris
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex From Desulfovibrio Vulgaris within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1002
b:10.8
occ:1.00
|
FE
|
B:HEC1002
|
0.0
|
10.8
|
1.0
|
NC
|
B:HEC1002
|
2.0
|
9.2
|
1.0
|
NB
|
B:HEC1002
|
2.1
|
11.3
|
1.0
|
NA
|
B:HEC1002
|
2.1
|
10.6
|
1.0
|
NE2
|
B:HIS191
|
2.1
|
10.7
|
1.0
|
ND
|
B:HEC1002
|
2.1
|
9.8
|
1.0
|
NE2
|
B:HIS335
|
2.2
|
10.0
|
1.0
|
C4C
|
B:HEC1002
|
3.0
|
10.5
|
1.0
|
C1C
|
B:HEC1002
|
3.0
|
10.8
|
1.0
|
CE1
|
B:HIS191
|
3.0
|
12.9
|
1.0
|
CD2
|
B:HIS335
|
3.1
|
9.2
|
1.0
|
C4B
|
B:HEC1002
|
3.1
|
10.2
|
1.0
|
C4A
|
B:HEC1002
|
3.1
|
10.5
|
1.0
|
CD2
|
B:HIS191
|
3.1
|
11.3
|
1.0
|
C1A
|
B:HEC1002
|
3.1
|
11.4
|
1.0
|
C1B
|
B:HEC1002
|
3.1
|
10.7
|
1.0
|
C1D
|
B:HEC1002
|
3.1
|
10.8
|
1.0
|
C4D
|
B:HEC1002
|
3.2
|
9.8
|
1.0
|
CE1
|
B:HIS335
|
3.3
|
8.4
|
1.0
|
CHD
|
B:HEC1002
|
3.4
|
11.2
|
1.0
|
CHC
|
B:HEC1002
|
3.4
|
9.4
|
1.0
|
CHB
|
B:HEC1002
|
3.5
|
10.8
|
1.0
|
CHA
|
B:HEC1002
|
3.5
|
10.6
|
1.0
|
ND1
|
B:HIS191
|
4.1
|
11.5
|
1.0
|
CG
|
B:HIS191
|
4.2
|
12.8
|
1.0
|
C2C
|
B:HEC1002
|
4.2
|
11.1
|
1.0
|
C3C
|
B:HEC1002
|
4.3
|
11.8
|
1.0
|
CG
|
B:HIS335
|
4.3
|
10.2
|
1.0
|
C3B
|
B:HEC1002
|
4.3
|
10.5
|
1.0
|
C3A
|
B:HEC1002
|
4.3
|
10.6
|
1.0
|
C2A
|
B:HEC1002
|
4.3
|
12.1
|
1.0
|
C2B
|
B:HEC1002
|
4.3
|
11.2
|
1.0
|
ND1
|
B:HIS335
|
4.3
|
8.6
|
1.0
|
C2D
|
B:HEC1002
|
4.4
|
10.2
|
1.0
|
C3D
|
B:HEC1002
|
4.4
|
10.1
|
1.0
|
CE
|
B:MET321
|
4.5
|
4.0
|
1.0
|
|
Iron binding site 8 out
of 84 in 2j7a
Go back to
Iron Binding Sites List in 2j7a
Iron binding site 8 out
of 84 in the Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex From Desulfovibrio Vulgaris
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex From Desulfovibrio Vulgaris within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1003
b:8.5
occ:1.00
|
FE
|
B:HEC1003
|
0.0
|
8.5
|
1.0
|
NB
|
B:HEC1003
|
2.0
|
8.6
|
1.0
|
NE2
|
B:HIS121
|
2.0
|
14.7
|
1.0
|
NA
|
B:HEC1003
|
2.0
|
7.7
|
1.0
|
ND
|
B:HEC1003
|
2.1
|
6.7
|
1.0
|
NC
|
B:HEC1003
|
2.2
|
7.6
|
1.0
|
NE2
|
B:HIS233
|
2.2
|
6.0
|
1.0
|
CE1
|
B:HIS121
|
3.0
|
13.4
|
1.0
|
C1B
|
B:HEC1003
|
3.0
|
9.8
|
1.0
|
C4A
|
B:HEC1003
|
3.0
|
7.7
|
1.0
|
CD2
|
B:HIS121
|
3.0
|
13.8
|
1.0
|
C1D
|
B:HEC1003
|
3.1
|
7.0
|
1.0
|
C1A
|
B:HEC1003
|
3.1
|
8.2
|
1.0
|
CD2
|
B:HIS233
|
3.1
|
6.3
|
1.0
|
C4B
|
B:HEC1003
|
3.1
|
9.1
|
1.0
|
C4D
|
B:HEC1003
|
3.1
|
8.0
|
1.0
|
C4C
|
B:HEC1003
|
3.1
|
6.0
|
1.0
|
C1C
|
B:HEC1003
|
3.2
|
8.2
|
1.0
|
CE1
|
B:HIS233
|
3.2
|
5.7
|
1.0
|
CHB
|
B:HEC1003
|
3.3
|
8.2
|
1.0
|
CHD
|
B:HEC1003
|
3.4
|
6.4
|
1.0
|
CHA
|
B:HEC1003
|
3.5
|
6.1
|
1.0
|
CHC
|
B:HEC1003
|
3.5
|
7.8
|
1.0
|
ND1
|
B:HIS121
|
4.1
|
15.4
|
1.0
|
CG
|
B:HIS121
|
4.2
|
14.3
|
1.0
|
C2B
|
B:HEC1003
|
4.2
|
7.8
|
1.0
|
C3A
|
B:HEC1003
|
4.2
|
7.7
|
1.0
|
CG
|
B:HIS233
|
4.3
|
6.8
|
1.0
|
C3B
|
B:HEC1003
|
4.3
|
9.0
|
1.0
|
C2A
|
B:HEC1003
|
4.3
|
7.5
|
1.0
|
ND1
|
B:HIS233
|
4.3
|
4.7
|
1.0
|
C2D
|
B:HEC1003
|
4.3
|
6.6
|
1.0
|
C3D
|
B:HEC1003
|
4.3
|
7.2
|
1.0
|
C3C
|
B:HEC1003
|
4.4
|
7.5
|
1.0
|
C2C
|
B:HEC1003
|
4.4
|
7.9
|
1.0
|
O
|
B:HOH2125
|
4.9
|
4.1
|
1.0
|
|
Iron binding site 9 out
of 84 in 2j7a
Go back to
Iron Binding Sites List in 2j7a
Iron binding site 9 out
of 84 in the Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex From Desulfovibrio Vulgaris
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex From Desulfovibrio Vulgaris within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1004
b:7.5
occ:1.00
|
FE
|
B:HEC1004
|
0.0
|
7.5
|
1.0
|
NC
|
B:HEC1004
|
2.0
|
7.1
|
1.0
|
NA
|
B:HEC1004
|
2.0
|
6.1
|
1.0
|
NB
|
B:HEC1004
|
2.0
|
6.0
|
1.0
|
NE2
|
B:HIS320
|
2.1
|
3.1
|
1.0
|
ND
|
B:HEC1004
|
2.1
|
6.2
|
1.0
|
NE2
|
B:HIS434
|
2.2
|
3.8
|
1.0
|
CE1
|
B:HIS320
|
2.9
|
2.0
|
1.0
|
CE1
|
B:HIS434
|
2.9
|
3.9
|
1.0
|
C4C
|
B:HEC1004
|
3.0
|
6.3
|
1.0
|
C4A
|
B:HEC1004
|
3.0
|
6.5
|
1.0
|
C1B
|
B:HEC1004
|
3.0
|
4.6
|
1.0
|
C1C
|
B:HEC1004
|
3.0
|
5.4
|
1.0
|
C1A
|
B:HEC1004
|
3.0
|
5.9
|
1.0
|
C1D
|
B:HEC1004
|
3.1
|
6.1
|
1.0
|
C4B
|
B:HEC1004
|
3.1
|
5.0
|
1.0
|
C4D
|
B:HEC1004
|
3.1
|
4.8
|
1.0
|
CD2
|
B:HIS320
|
3.1
|
3.9
|
1.0
|
CD2
|
B:HIS434
|
3.3
|
5.5
|
1.0
|
CHD
|
B:HEC1004
|
3.3
|
5.6
|
1.0
|
CHB
|
B:HEC1004
|
3.4
|
4.7
|
1.0
|
CHA
|
B:HEC1004
|
3.4
|
5.1
|
1.0
|
CHC
|
B:HEC1004
|
3.4
|
4.3
|
1.0
|
ND1
|
B:HIS320
|
4.1
|
3.1
|
1.0
|
ND1
|
B:HIS434
|
4.1
|
7.4
|
1.0
|
C3C
|
B:HEC1004
|
4.2
|
4.5
|
1.0
|
CG
|
B:HIS320
|
4.2
|
4.2
|
1.0
|
C3A
|
B:HEC1004
|
4.2
|
6.3
|
1.0
|
C2C
|
B:HEC1004
|
4.2
|
4.8
|
1.0
|
C2A
|
B:HEC1004
|
4.2
|
6.1
|
1.0
|
C2B
|
B:HEC1004
|
4.3
|
3.2
|
1.0
|
C3B
|
B:HEC1004
|
4.3
|
2.8
|
1.0
|
C3D
|
B:HEC1004
|
4.3
|
5.0
|
1.0
|
C2D
|
B:HEC1004
|
4.3
|
4.9
|
1.0
|
CG
|
B:HIS434
|
4.3
|
6.0
|
1.0
|
|
Iron binding site 10 out
of 84 in 2j7a
Go back to
Iron Binding Sites List in 2j7a
Iron binding site 10 out
of 84 in the Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex From Desulfovibrio Vulgaris
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Crystal Structure of Cytochrome C Nitrite Reductase Nrfha Complex From Desulfovibrio Vulgaris within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe1005
b:9.0
occ:1.00
|
FE
|
B:HEC1005
|
0.0
|
9.0
|
1.0
|
NC
|
B:HEC1005
|
2.0
|
8.5
|
1.0
|
ND
|
B:HEC1005
|
2.0
|
7.7
|
1.0
|
NE2
|
B:HIS353
|
2.1
|
8.9
|
1.0
|
NA
|
B:HEC1005
|
2.1
|
8.9
|
1.0
|
NB
|
B:HEC1005
|
2.1
|
7.7
|
1.0
|
NE2
|
B:HIS309
|
2.2
|
6.7
|
1.0
|
C4C
|
B:HEC1005
|
3.0
|
8.3
|
1.0
|
CE1
|
B:HIS353
|
3.0
|
9.6
|
1.0
|
C1D
|
B:HEC1005
|
3.0
|
8.2
|
1.0
|
C4D
|
B:HEC1005
|
3.0
|
8.8
|
1.0
|
C1C
|
B:HEC1005
|
3.1
|
8.9
|
1.0
|
C1A
|
B:HEC1005
|
3.1
|
9.9
|
1.0
|
CD2
|
B:HIS309
|
3.1
|
4.6
|
1.0
|
CD2
|
B:HIS353
|
3.1
|
11.1
|
1.0
|
C1B
|
B:HEC1005
|
3.1
|
6.4
|
1.0
|
C4B
|
B:HEC1005
|
3.1
|
7.3
|
1.0
|
C4A
|
B:HEC1005
|
3.1
|
9.3
|
1.0
|
CE1
|
B:HIS309
|
3.2
|
3.1
|
1.0
|
CHD
|
B:HEC1005
|
3.4
|
7.8
|
1.0
|
CHA
|
B:HEC1005
|
3.4
|
8.8
|
1.0
|
CHC
|
B:HEC1005
|
3.5
|
8.3
|
1.0
|
CHB
|
B:HEC1005
|
3.5
|
8.5
|
1.0
|
ND1
|
B:HIS353
|
4.1
|
9.4
|
1.0
|
CG
|
B:HIS353
|
4.2
|
11.1
|
1.0
|
C3C
|
B:HEC1005
|
4.2
|
8.2
|
1.0
|
C2D
|
B:HEC1005
|
4.2
|
7.5
|
1.0
|
C3D
|
B:HEC1005
|
4.2
|
8.2
|
1.0
|
C2C
|
B:HEC1005
|
4.2
|
9.2
|
1.0
|
CG
|
B:HIS309
|
4.3
|
6.7
|
1.0
|
ND1
|
B:HIS309
|
4.3
|
4.8
|
1.0
|
C2A
|
B:HEC1005
|
4.3
|
9.4
|
1.0
|
C3A
|
B:HEC1005
|
4.3
|
10.5
|
1.0
|
C2B
|
B:HEC1005
|
4.3
|
8.1
|
1.0
|
C3B
|
B:HEC1005
|
4.4
|
6.4
|
1.0
|
CBC
|
B:HEC1004
|
4.9
|
5.3
|
1.0
|
|
Reference:
M.L.Rodrigues,
T.F.Oliveira,
I.A.C.Pereira,
M.Archer.
X-Ray Structure of the Membrane-Bound Cytochrome C Quinol Dehydrogenase Nrfh Reveals Novel Haem Coordination. Embo J. V. 25 5951 2006.
ISSN: ISSN 0261-4189
PubMed: 17139260
DOI: 10.1038/SJ.EMBOJ.7601439
Page generated: Sat Aug 3 23:37:55 2024
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