Iron in PDB 2j9b: The Crystal Structure of Cytochrome C' From Rubrivivax Gelatinosus at 1.5 A Resolution and pH 6.3

The structure of The Crystal Structure of Cytochrome C' From Rubrivivax Gelatinosus at 1.5 A Resolution and pH 6.3, PDB code: 2j9b was solved by S.Benini, S.Ciurli, W.R.Rypniewski, K.S.Wilson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.92 / 1.50
Space group	P 31 2 1
Cell size a, b, c (Å), α, β, γ (°)	69.558, 69.558, 123.374, 90.00, 90.00, 120.00
R / Rfree (%)	15.3 / 17.7

The binding sites of Iron atom in the The Crystal Structure of Cytochrome C' From Rubrivivax Gelatinosus at 1.5 A Resolution and pH 6.3 (pdb code 2j9b). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the The Crystal Structure of Cytochrome C' From Rubrivivax Gelatinosus at 1.5 A Resolution and pH 6.3, PDB code: 2j9b:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the The Crystal Structure of Cytochrome C' From Rubrivivax Gelatinosus at 1.5 A Resolution and pH 6.3


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Crystal Structure of Cytochrome C' From Rubrivivax Gelatinosus at 1.5 A Resolution and pH 6.3 within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1128 b:16.3 occ:1.00 FE A:HEC1128 0.0 16.3 1.0 NC A:HEC1128 2.0 15.3 1.0 NA A:HEC1128 2.0 15.6 1.0 ND A:HEC1128 2.1 15.4 1.0 NB A:HEC1128 2.1 14.3 1.0 NE2 A:HIS123 2.2 18.4 1.0 C4A A:HEC1128 3.0 14.8 1.0 C1B A:HEC1128 3.1 15.2 1.0 C1D A:HEC1128 3.1 15.6 1.0 C4C A:HEC1128 3.1 15.6 1.0 C1A A:HEC1128 3.1 16.0 1.0 C4D A:HEC1128 3.1 15.8 1.0 C4B A:HEC1128 3.1 16.5 1.0 C1C A:HEC1128 3.1 15.0 1.0 CE1 A:HIS123 3.1 19.5 1.0 CD2 A:HIS123 3.2 19.9 1.0 CHB A:HEC1128 3.4 16.1 1.0 CD1 A:PHE16 3.4 16.9 1.0 CHD A:HEC1128 3.4 16.4 1.0 CE1 A:PHE16 3.5 17.5 1.0 CHA A:HEC1128 3.5 16.7 1.0 CHC A:HEC1128 3.5 16.4 1.0 CG A:PHE16 3.8 15.2 1.0 CZ A:PHE16 3.9 16.5 1.0 CD2 A:PHE16 4.2 16.1 1.0 CE2 A:PHE16 4.2 17.9 1.0 C3A A:HEC1128 4.3 15.7 1.0 C2A A:HEC1128 4.3 16.7 1.0 C3B A:HEC1128 4.3 16.0 1.0 ND1 A:HIS123 4.3 22.8 1.0 C2D A:HEC1128 4.3 15.7 1.0 C2B A:HEC1128 4.3 15.7 1.0 C2C A:HEC1128 4.3 15.6 1.0 C3D A:HEC1128 4.3 16.6 1.0 C3C A:HEC1128 4.3 15.8 1.0 CG A:HIS123 4.3 19.1 1.0 CB A:PHE16 4.5 15.1 1.0 CD A:LYS127 4.8 21.0 1.0

Iron binding site 2 out of 2 in the The Crystal Structure of Cytochrome C' From Rubrivivax Gelatinosus at 1.5 A Resolution and pH 6.3


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Crystal Structure of Cytochrome C' From Rubrivivax Gelatinosus at 1.5 A Resolution and pH 6.3 within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe1129 b:15.3 occ:1.00 FE B:HEC1129 0.0 15.3 1.0 NA B:HEC1129 2.0 15.4 1.0 NC B:HEC1129 2.0 14.4 1.0 NB B:HEC1129 2.1 14.8 1.0 ND B:HEC1129 2.1 15.4 1.0 NE2 B:HIS123 2.1 16.6 1.0 C4B B:HEC1129 3.1 15.1 1.0 C1C B:HEC1129 3.1 14.4 1.0 C1D B:HEC1129 3.1 15.2 1.0 C1B B:HEC1129 3.1 15.7 1.0 C4C B:HEC1129 3.1 16.1 1.0 C4D B:HEC1129 3.1 15.9 1.0 C4A B:HEC1129 3.1 15.5 1.0 C1A B:HEC1129 3.1 15.4 1.0 CE1 B:HIS123 3.1 20.8 1.0 CD2 B:HIS123 3.2 16.0 1.0 CHC B:HEC1129 3.4 14.1 1.0 CD1 B:PHE16 3.4 17.7 1.0 CHA B:HEC1129 3.4 16.0 1.0 CHD B:HEC1129 3.4 15.9 1.0 CHB B:HEC1129 3.5 15.4 1.0 CE1 B:PHE16 3.5 18.6 1.0 CG B:PHE16 3.8 16.8 1.0 CZ B:PHE16 3.9 18.3 1.0 CD2 B:PHE16 4.1 17.9 1.0 CE2 B:PHE16 4.2 19.2 1.0 ND1 B:HIS123 4.2 21.3 1.0 C3B B:HEC1129 4.3 15.2 1.0 C2C B:HEC1129 4.3 14.3 1.0 CG B:HIS123 4.3 17.8 1.0 C3D B:HEC1129 4.3 15.7 1.0 C2B B:HEC1129 4.3 14.5 1.0 C3C B:HEC1129 4.3 15.3 1.0 C3A B:HEC1129 4.3 16.1 1.0 C2A B:HEC1129 4.3 15.6 1.0 C2D B:HEC1129 4.3 15.8 1.0 CB B:PHE16 4.4 15.6 1.0 CD B:LYS127 4.8 20.1 1.0

S.Benini, W.R.Rypniewski, K.S.Wilson, S.Ciurli. High Resolution Crystal Structure of Rubrivivax Gelatinosus Cytochrome C'. J. Inorg. Biochem. V. 102 1322 2008.
ISSN: ISSN 0162-0134
PubMed: 18295896
DOI: 10.1016/J.JINORGBIO.2008.01.017