Iron in the structure of Crystal Structure of The As Isolated Ferritin From the Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus (pdb 2jd6)

The binding sites of Iron atom in the structure of Crystal Structure of The As Isolated Ferritin From the Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus (pdb code 2jd6). This binding sites where shown with 5.0 Angstroms radius around Iron atom. The 2jd6 structure was solved by J.TATUR, W.R.HAGEN, P.M.MATIAS, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 204.1-2.8 Space group C22212 a (A) 254.097 b (A) 341.422 c (A) 265.524 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) 19.5 Rfree (%) 24.7 Iron Binding Sites: Iron binding site 1 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: 0: Glu17, 0: Glu50, 0: His53, 0: Ile97, 0: Gln127, 0: Glu130, 0: Hoh2006, conact list: Atom Atom Distance (A) Fe OE1 0:Glu17 2.26 Fe OE2 0:Glu17 3.28 Fe CD 0:Glu17 3.13 Fe CG 0:Glu17 4.54 Fe OE1 0:Glu50 2.33 Fe OE2 0:Glu50 3.72 Fe CD 0:Glu50 3.38 Fe CG 0:Glu50 4.73 Fe CA 0:Glu50 4.93 Fe NE2 0:His53 4.20 Fe CB 0:His53 3.76 Fe ND1 0:His53 2.22 Fe CD2 0:His53 4.36 Fe CE1 0:His53 3.02 Fe CG 0:His53 3.32 Fe CG2 0:Ile97 4.23 Fe NE2 0:Gln127 3.50 Fe CD 0:Gln127 4.76 Fe OE1 0:Glu130 4.87 Fe O 0:Hoh2006 2.61 interactive model: Iron binding site 2 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: 1: Glu17, 1: Glu50, 1: His53, 1: Ile97, 1: Gln127, 1: Hoh2006, conact list: Atom Atom Distance (A) Fe OE1 1:Glu17 2.10 Fe CB 1:Glu17 4.89 Fe OE2 1:Glu17 3.35 Fe CD 1:Glu17 3.05 Fe CG 1:Glu17 4.42 Fe OE1 1:Glu50 2.28 Fe CB 1:Glu50 4.63 Fe OE2 1:Glu50 3.79 Fe CD 1:Glu50 3.33 Fe CG 1:Glu50 4.55 Fe CA 1:Glu50 4.59 Fe NE2 1:His53 4.07 Fe CB 1:His53 3.40 Fe ND1 1:His53 2.04 Fe CD2 1:His53 4.12 Fe CE1 1:His53 2.97 Fe CG 1:His53 3.03 Fe CA 1:His53 4.93 Fe CG2 1:Ile97 4.60 Fe NE2 1:Gln127 3.91 Fe O 1:Hoh2006 3.17 interactive model: Iron binding site 3 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: 2: Glu17, 2: Glu50, 2: His53, 2: Ile97, 2: Gln127, conact list: Atom Atom Distance (A) Fe OE1 2:Glu17 2.15 Fe CB 2:Glu17 4.82 Fe OE2 2:Glu17 3.48 Fe CD 2:Glu17 3.14 Fe CG 2:Glu17 4.45 Fe OE1 2:Glu50 2.20 Fe CB 2:Glu50 4.90 Fe OE2 2:Glu50 3.59 Fe CD 2:Glu50 3.25 Fe CG 2:Glu50 4.61 Fe CA 2:Glu50 4.76 Fe NE2 2:His53 3.99 Fe CB 2:His53 3.49 Fe ND1 2:His53 2.03 Fe CD2 2:His53 4.10 Fe CE1 2:His53 2.88 Fe CG 2:His53 3.06 Fe CA 2:His53 5.00 Fe CG2 2:Ile97 4.53 Fe NE2 2:Gln127 3.64 Fe CD 2:Gln127 4.90 interactive model: Iron binding site 4 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: 3: Glu17, 3: Glu50, 3: His53, 3: Ile97, 3: Gln127, 3: Glu130, conact list: Atom Atom Distance (A) Fe OE1 3:Glu17 2.41 Fe OE2 3:Glu17 3.42 Fe CD 3:Glu17 3.27 Fe CG 3:Glu17 4.67 Fe OE1 3:Glu50 2.29 Fe OE2 3:Glu50 3.58 Fe CD 3:Glu50 3.29 Fe CG 3:Glu50 4.67 Fe CA 3:Glu50 4.83 Fe NE2 3:His53 3.99 Fe CB 3:His53 3.65 Fe ND1 3:His53 2.03 Fe CD2 3:His53 4.16 Fe CE1 3:His53 2.82 Fe CG 3:His53 3.15 Fe CG2 3:Ile97 4.29 Fe NE2 3:Gln127 3.62 Fe CD 3:Gln127 4.90 Fe OE1 3:Glu130 4.78 interactive model: Iron binding site 5 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: 4: Glu17, 4: Glu50, 4: His53, 4: Ile97, 4: Gln127, 4: Glu130, conact list: Atom Atom Distance (A) Fe OE1 4:Glu17 2.30 Fe OE2 4:Glu17 3.36 Fe CD 4:Glu17 3.18 Fe CG 4:Glu17 4.57 Fe OE1 4:Glu50 2.46 Fe OE2 4:Glu50 3.68 Fe CD 4:Glu50 3.44 Fe CG 4:Glu50 4.84 Fe NE2 4:His53 4.11 Fe CB 4:His53 3.79 Fe ND1 4:His53 2.21 Fe CD2 4:His53 4.29 Fe CE1 4:His53 2.96 Fe CG 4:His53 3.30 Fe CG2 4:Ile97 4.23 Fe NE2 4:Gln127 3.50 Fe CD 4:Gln127 4.68 Fe OE1 4:Glu130 4.92 interactive model: Iron binding site 6 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: 5: Glu17, 5: Glu50, 5: His53, 5: Ile97, 5: Gln127, 5: Glu130, conact list: Atom Atom Distance (A) Fe OE1 5:Glu17 2.20 Fe CB 5:Glu17 4.83 Fe OE2 5:Glu17 3.39 Fe CD 5:Glu17 3.11 Fe CG 5:Glu17 4.45 Fe OE1 5:Glu50 2.19 Fe CB 5:Glu50 4.83 Fe OE2 5:Glu50 3.68 Fe CD 5:Glu50 3.28 Fe CG 5:Glu50 4.60 Fe CA 5:Glu50 4.68 Fe NE2 5:His53 3.96 Fe CB 5:His53 3.57 Fe ND1 5:His53 2.02 Fe CD2 5:His53 4.10 Fe CE1 5:His53 2.84 Fe CG 5:His53 3.08 Fe CG2 5:Ile97 4.48 Fe NE2 5:Gln127 3.98 Fe OE1 5:Glu130 4.81 interactive model: Iron binding site 7 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: 6: Glu17, 6: Glu50, 6: His53, 6: Ile97, 6: Gln127, conact list: Atom Atom Distance (A) Fe OE1 6:Glu17 2.24 Fe CB 6:Glu17 4.97 Fe OE2 6:Glu17 3.18 Fe CD 6:Glu17 3.05 Fe CG 6:Glu17 4.46 Fe OE1 6:Glu50 2.42 Fe OE2 6:Glu50 3.58 Fe CD 6:Glu50 3.37 Fe CG 6:Glu50 4.80 Fe NE2 6:His53 4.17 Fe CB 6:His53 3.64 Fe ND1 6:His53 2.17 Fe CD2 6:His53 4.29 Fe CE1 6:His53 3.02 Fe CG 6:His53 3.23 Fe CG2 6:Ile97 4.33 Fe NE2 6:Gln127 3.71 Fe CD 6:Gln127 4.95 interactive model: Iron binding site 8 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: 7: Glu17, 7: Glu50, 7: His53, 7: Ile97, 7: Gln127, 7: Glu130, conact list: Atom Atom Distance (A) Fe OE1 7:Glu17 2.21 Fe CB 7:Glu17 4.89 Fe OE2 7:Glu17 3.35 Fe CD 7:Glu17 3.11 Fe CG 7:Glu17 4.47 Fe OE1 7:Glu50 2.29 Fe CB 7:Glu50 4.93 Fe OE2 7:Glu50 3.54 Fe CD 7:Glu50 3.26 Fe CG 7:Glu50 4.63 Fe CA 7:Glu50 4.80 Fe NE2 7:His53 4.01 Fe CB 7:His53 3.56 Fe ND1 7:His53 2.03 Fe CD2 7:His53 4.14 Fe CE1 7:His53 2.87 Fe CG 7:His53 3.10 Fe CG2 7:Ile97 4.32 Fe NE2 7:Gln127 3.79 Fe CD 7:Gln127 4.89 Fe OE1 7:Glu130 4.86 interactive model: Iron binding site 9 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 9 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: 8: Glu17, 8: Glu50, 8: His53, 8: Ile97, 8: Gln127, conact list: Atom Atom Distance (A) Fe OE1 8:Glu17 2.26 Fe CB 8:Glu17 4.94 Fe OE2 8:Glu17 3.48 Fe CD 8:Glu17 3.20 Fe CG 8:Glu17 4.54 Fe OE1 8:Glu50 2.16 Fe CB 8:Glu50 4.89 Fe OE2 8:Glu50 3.37 Fe CD 8:Glu50 3.12 Fe CG 8:Glu50 4.51 Fe CA 8:Glu50 4.77 Fe NE2 8:His53 4.09 Fe CB 8:His53 3.52 Fe ND1 8:His53 2.06 Fe CD2 8:His53 4.20 Fe CE1 8:His53 2.95 Fe CG 8:His53 3.12 Fe CG2 8:Ile97 4.45 Fe OE1 8:Gln127 4.07 interactive model: Iron binding site 10 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 10 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: 9: Glu17, 9: Glu50, 9: His53, 9: Ile97, 9: Gln127, 9: Glu130, conact list: Atom Atom Distance (A) Fe OE1 9:Glu17 2.27 Fe CB 9:Glu17 4.97 Fe OE2 9:Glu17 3.40 Fe CD 9:Glu17 3.18 Fe CG 9:Glu17 4.57 Fe OE1 9:Glu50 2.31 Fe OE2 9:Glu50 3.66 Fe CD 9:Glu50 3.34 Fe CG 9:Glu50 4.71 Fe CA 9:Glu50 4.88 Fe NE2 9:His53 3.99 Fe CB 9:His53 3.60 Fe ND1 9:His53 2.03 Fe CD2 9:His53 4.14 Fe CE1 9:His53 2.84 Fe CG 9:His53 3.12 Fe CG2 9:Ile97 4.45 Fe NE2 9:Gln127 3.72 Fe CD 9:Gln127 4.99 Fe OE1 9:Glu130 4.75 interactive model: Iron binding site 11 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 11 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Glu17, A: Glu50, A: His53, A: Ile97, A: Gln127, A: Hoh2014, conact list: Atom Atom Distance (A) Fe OE1 A:Glu17 2.21 Fe CB A:Glu17 4.92 Fe OE2 A:Glu17 3.56 Fe CD A:Glu17 3.22 Fe CG A:Glu17 4.54 Fe OE1 A:Glu50 2.10 Fe CB A:Glu50 4.65 Fe OE2 A:Glu50 3.42 Fe CD A:Glu50 3.06 Fe CG A:Glu50 4.37 Fe CA A:Glu50 4.56 Fe NE2 A:His53 4.08 Fe CB A:His53 3.48 Fe ND1 A:His53 2.05 Fe CD2 A:His53 4.16 Fe CE1 A:His53 2.95 Fe CG A:His53 3.09 Fe CG2 A:Ile97 4.68 Fe NE2 A:Gln127 3.83 Fe O A:Hoh2014 2.91 interactive model: Iron binding site 12 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 12 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Glu17, B: Glu50, B: His53, B: Ile97, B: Gln127, conact list: Atom Atom Distance (A) Fe OE1 B:Glu17 2.25 Fe CB B:Glu17 4.92 Fe OE2 B:Glu17 3.27 Fe CD B:Glu17 3.09 Fe CG B:Glu17 4.46 Fe OE1 B:Glu50 2.38 Fe CB B:Glu50 4.93 Fe OE2 B:Glu50 3.62 Fe CD B:Glu50 3.34 Fe CG B:Glu50 4.67 Fe CA B:Glu50 4.70 Fe NE2 B:His53 4.08 Fe CB B:His53 3.47 Fe ND1 B:His53 2.12 Fe CD2 B:His53 4.15 Fe CE1 B:His53 2.99 Fe CG B:His53 3.09 Fe CA B:His53 4.99 Fe CG2 B:Ile97 4.57 Fe NE2 B:Gln127 3.94 interactive model: Iron binding site 13 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 13 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: C: Glu17, C: Glu50, C: His53, C: Ile97, C: Gln127, conact list: Atom Atom Distance (A) Fe OE1 C:Glu17 2.17 Fe CB C:Glu17 4.84 Fe OE2 C:Glu17 3.23 Fe CD C:Glu17 3.03 Fe CG C:Glu17 4.40 Fe OE1 C:Glu50 2.31 Fe CB C:Glu50 4.95 Fe OE2 C:Glu50 3.64 Fe CD C:Glu50 3.32 Fe CG C:Glu50 4.67 Fe CA C:Glu50 4.86 Fe NE2 C:His53 4.09 Fe CB C:His53 3.56 Fe ND1 C:His53 2.13 Fe CD2 C:His53 4.19 Fe CE1 C:His53 2.97 Fe CG C:His53 3.15 Fe CG2 C:Ile97 4.43 Fe OE1 C:Gln127 3.98 interactive model: Iron binding site 14 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 14 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: D: Glu17, D: Glu50, D: His53, D: Ile97, D: Gln127, conact list: Atom Atom Distance (A) Fe OE1 D:Glu17 2.15 Fe CB D:Glu17 4.80 Fe OE2 D:Glu17 3.25 Fe CD D:Glu17 3.01 Fe CG D:Glu17 4.34 Fe OE1 D:Glu50 2.19 Fe CB D:Glu50 4.74 Fe OE2 D:Glu50 3.67 Fe CD D:Glu50 3.26 Fe CG D:Glu50 4.55 Fe CA D:Glu50 4.55 Fe NE2 D:His53 4.08 Fe CB D:His53 3.42 Fe ND1 D:His53 2.09 Fe CD2 D:His53 4.13 Fe CE1 D:His53 3.00 Fe CG D:His53 3.05 Fe CA D:His53 4.94 Fe CG2 D:Ile97 4.65 Fe NE2 D:Gln127 3.89 interactive model: Iron binding site 15 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 15 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: E: Glu17, E: Glu50, E: His53, E: Ile97, E: Gln127, conact list: Atom Atom Distance (A) Fe OE1 E:Glu17 2.23 Fe CB E:Glu17 4.93 Fe OE2 E:Glu17 3.36 Fe CD E:Glu17 3.14 Fe CG E:Glu17 4.50 Fe OE1 E:Glu50 2.35 Fe CB E:Glu50 4.91 Fe OE2 E:Glu50 3.73 Fe CD E:Glu50 3.38 Fe CG E:Glu50 4.70 Fe CA E:Glu50 4.84 Fe NE2 E:His53 4.16 Fe CB E:His53 3.55 Fe ND1 E:His53 2.17 Fe CD2 E:His53 4.25 Fe CE1 E:His53 3.05 Fe CG E:His53 3.18 Fe CG2 E:Ile97 4.52 Fe NE2 E:Gln127 3.55 Fe CD E:Gln127 4.86 interactive model: Iron binding site 16 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 16 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: F: Glu17, F: Glu50, F: His53, F: Ile97, F: Gln127, F: Glu130, F: Hoh2023, conact list: Atom Atom Distance (A) Fe OE1 F:Glu17 2.14 Fe CB F:Glu17 4.84 Fe OE2 F:Glu17 3.26 Fe CD F:Glu17 3.03 Fe CG F:Glu17 4.39 Fe OE1 F:Glu50 2.14 Fe CB F:Glu50 4.71 Fe OE2 F:Glu50 3.68 Fe CD F:Glu50 3.23 Fe CG F:Glu50 4.49 Fe CA F:Glu50 4.61 Fe NE2 F:His53 4.09 Fe CB F:His53 3.50 Fe ND1 F:His53 2.05 Fe CD2 F:His53 4.18 Fe CE1 F:His53 2.95 Fe CG F:His53 3.10 Fe CG2 F:Ile97 4.54 Fe NE2 F:Gln127 3.88 Fe OE1 F:Glu130 4.87 Fe O F:Hoh2023 2.98 interactive model: Iron binding site 17 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 17 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: G: Glu17, G: Glu50, G: His53, G: Ile97, G: Gln127, G: Hoh2010, conact list: Atom Atom Distance (A) Fe OE1 G:Glu17 2.35 Fe OE2 G:Glu17 3.66 Fe CD G:Glu17 3.35 Fe CG G:Glu17 4.68 Fe OE1 G:Glu50 2.16 Fe CB G:Glu50 4.82 Fe OE2 G:Glu50 3.41 Fe CD G:Glu50 3.12 Fe CG G:Glu50 4.48 Fe CA G:Glu50 4.74 Fe NE2 G:His53 4.24 Fe CB G:His53 3.72 Fe ND1 G:His53 2.24 Fe CD2 G:His53 4.37 Fe CE1 G:His53 3.07 Fe CG G:His53 3.32 Fe CG2 G:Ile97 4.57 Fe NE2 G:Gln127 3.73 Fe CD G:Gln127 4.96 Fe O G:Hoh2010 2.82 interactive model: Iron binding site 18 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 18 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: H: Glu17, H: Glu50, H: His53, H: Glu94, H: Ile97, H: Gln127, conact list: Atom Atom Distance (A) Fe OE1 H:Glu17 2.35 Fe OE2 H:Glu17 3.28 Fe CD H:Glu17 3.18 Fe CG H:Glu17 4.61 Fe OE1 H:Glu50 2.24 Fe CB H:Glu50 4.97 Fe OE2 H:Glu50 3.53 Fe CD H:Glu50 3.24 Fe CG H:Glu50 4.63 Fe CA H:Glu50 4.85 Fe NE2 H:His53 4.07 Fe CB H:His53 3.72 Fe ND1 H:His53 2.14 Fe CD2 H:His53 4.24 Fe CE1 H:His53 2.91 Fe CG H:His53 3.23 Fe OE2 H:Glu94 4.97 Fe CG2 H:Ile97 4.32 Fe NE2 H:Gln127 3.53 Fe CD H:Gln127 4.81 interactive model: Iron binding site 19 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 19 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: I: Glu17, I: Glu50, I: His53, I: Ile97, I: Gln127, I: Hoh2005, conact list: Atom Atom Distance (A) Fe OE1 I:Glu17 2.13 Fe CB I:Glu17 4.83 Fe OE2 I:Glu17 3.27 Fe CD I:Glu17 3.04 Fe CG I:Glu17 4.40 Fe OE1 I:Glu50 2.09 Fe CB I:Glu50 4.74 Fe OE2 I:Glu50 3.50 Fe CD I:Glu50 3.13 Fe CG I:Glu50 4.47 Fe CA I:Glu50 4.68 Fe NE2 I:His53 4.30 Fe CB I:His53 3.60 Fe ND1 I:His53 2.27 Fe CD2 I:His53 4.38 Fe CE1 I:His53 3.17 Fe CG I:His53 3.28 Fe CG2 I:Ile97 4.40 Fe NE2 I:Gln127 3.81 Fe O I:Hoh2005 2.52 interactive model: Iron binding site 20 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 20 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: J: Glu17, J: Glu50, J: His53, J: Ile97, J: Gln127, J: Glu130, conact list: Atom Atom Distance (A) Fe OE1 J:Glu17 2.30 Fe CB J:Glu17 4.87 Fe OE2 J:Glu17 3.66 Fe CD J:Glu17 3.28 Fe CG J:Glu17 4.53 Fe O J:Glu50 4.94 Fe OE1 J:Glu50 2.08 Fe CB J:Glu50 4.61 Fe OE2 J:Glu50 3.51 Fe CD J:Glu50 3.11 Fe CG J:Glu50 4.40 Fe CA J:Glu50 4.43 Fe NE2 J:His53 4.04 Fe CB J:His53 3.38 Fe ND1 J:His53 2.02 Fe CD2 J:His53 4.09 Fe CE1 J:His53 2.95 Fe CG J:His53 3.00 Fe CA J:His53 4.90 Fe CG2 J:Ile97 4.84 Fe NE2 J:Gln127 4.04 Fe OE1 J:Glu130 4.32 interactive model: Iron binding site 21 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 21 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: K: Glu17, K: Glu50, K: His53, K: Ile97, K: Gln127, conact list: Atom Atom Distance (A) Fe OE1 K:Glu17 2.19 Fe CB K:Glu17 4.92 Fe OE2 K:Glu17 3.30 Fe CD K:Glu17 3.09 Fe CG K:Glu17 4.46 Fe OE1 K:Glu50 2.08 Fe CB K:Glu50 4.83 Fe OE2 K:Glu50 3.47 Fe CD K:Glu50 3.13 Fe CG K:Glu50 4.49 Fe CA K:Glu50 4.67 Fe NE2 K:His53 4.07 Fe CB K:His53 3.53 Fe ND1 K:His53 2.06 Fe CD2 K:His53 4.17 Fe CE1 K:His53 2.94 Fe CG K:His53 3.11 Fe CG2 K:Ile97 4.58 Fe NE2 K:Gln127 3.83 interactive model: Iron binding site 22 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 22 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: L: Glu17, L: Glu50, L: His53, L: Ile97, L: Gln127, L: Glu130, conact list: Atom Atom Distance (A) Fe OE1 L:Glu17 2.44 Fe CB L:Glu17 4.98 Fe OE2 L:Glu17 3.31 Fe CD L:Glu17 3.21 Fe CG L:Glu17 4.56 Fe OE1 L:Glu50 2.25 Fe CB L:Glu50 4.88 Fe OE2 L:Glu50 3.56 Fe CD L:Glu50 3.24 Fe CG L:Glu50 4.59 Fe CA L:Glu50 4.77 Fe NE2 L:His53 4.11 Fe CB L:His53 3.61 Fe ND1 L:His53 2.10 Fe CD2 L:His53 4.24 Fe CE1 L:His53 2.95 Fe CG L:His53 3.18 Fe CG2 L:Ile97 4.38 Fe NE2 L:Gln127 3.51 Fe CD L:Gln127 4.69 Fe OE1 L:Glu130 4.99 interactive model: Iron binding site 23 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 23 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: M: Glu17, M: Glu50, M: His53, M: Ile97, M: Gln127, M: Glu130, conact list: Atom Atom Distance (A) Fe OE1 M:Glu17 2.24 Fe OE2 M:Glu17 3.22 Fe CD M:Glu17 3.08 Fe CG M:Glu17 4.48 Fe OE1 M:Glu50 2.40 Fe CB M:Glu50 5.00 Fe OE2 M:Glu50 3.65 Fe CD M:Glu50 3.38 Fe CG M:Glu50 4.73 Fe CA M:Glu50 4.84 Fe NE2 M:His53 4.04 Fe CB M:His53 3.62 Fe ND1 M:His53 2.08 Fe CD2 M:His53 4.19 Fe CE1 M:His53 2.89 Fe CG M:His53 3.16 Fe CG2 M:Ile97 4.41 Fe NE2 M:Gln127 3.59 Fe CD M:Gln127 4.82 Fe OE1 M:Glu130 4.78 interactive model: Iron binding site 24 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 24 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: N: Glu17, N: Glu50, N: His53, N: Ile97, N: Phe123, N: Gln127, conact list: Atom Atom Distance (A) Fe OE1 N:Glu17 2.23 Fe CB N:Glu17 4.91 Fe OE2 N:Glu17 3.00 Fe CD N:Glu17 2.92 Fe CG N:Glu17 4.32 Fe OE1 N:Glu50 2.46 Fe OE2 N:Glu50 3.96 Fe CD N:Glu50 3.55 Fe CG N:Glu50 4.87 Fe CA N:Glu50 4.92 Fe NE2 N:His53 4.00 Fe CB N:His53 3.34 Fe ND1 N:His53 2.12 Fe CD2 N:His53 4.01 Fe CE1 N:His53 3.01 Fe CG N:His53 2.97 Fe CA N:His53 4.84 Fe CG2 N:Ile97 4.40 Fe CD1 N:Phe123 4.79 Fe CE1 N:Phe123 4.86 Fe NE2 N:Gln127 3.69 Fe CD N:Gln127 4.90 interactive model: Iron binding site 25 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 25 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: O: Glu17, O: Glu50, O: His53, O: Ile97, O: Gln127, conact list: Atom Atom Distance (A) Fe OE1 O:Glu17 2.30 Fe CB O:Glu17 4.89 Fe OE2 O:Glu17 3.02 Fe CD O:Glu17 2.98 Fe CG O:Glu17 4.38 Fe OE1 O:Glu50 2.43 Fe OE2 O:Glu50 3.71 Fe CD O:Glu50 3.44 Fe CG O:Glu50 4.83 Fe NE2 O:His53 4.33 Fe CB O:His53 3.84 Fe ND1 O:His53 2.41 Fe CD2 O:His53 4.48 Fe CE1 O:His53 3.19 Fe CG O:His53 3.45 Fe CG2 O:Ile97 4.01 Fe NE2 O:Gln127 3.60 Fe CD O:Gln127 4.88 interactive model: Iron binding site 26 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 26 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: P: Glu17, P: Glu50, P: His53, P: Ile97, P: Gln127, P: Hoh2005, conact list: Atom Atom Distance (A) Fe OE1 P:Glu17 2.23 Fe CB P:Glu17 4.98 Fe OE2 P:Glu17 3.50 Fe CD P:Glu17 3.20 Fe CG P:Glu17 4.56 Fe OE1 P:Glu50 2.14 Fe CB P:Glu50 4.89 Fe OE2 P:Glu50 3.51 Fe CD P:Glu50 3.18 Fe CG P:Glu50 4.56 Fe CA P:Glu50 4.69 Fe NE2 P:His53 4.11 Fe CB P:His53 3.60 Fe ND1 P:His53 2.20 Fe CD2 P:His53 4.21 Fe CE1 P:His53 3.02 Fe CG P:His53 3.18 Fe CG2 P:Ile97 4.45 Fe OE1 P:Gln127 3.58 Fe CD P:Gln127 4.72 Fe O P:Hoh2005 2.50 interactive model: Iron binding site 27 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 27 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: Q: Glu17, Q: Glu50, Q: His53, Q: Ile97, Q: Gln127, conact list: Atom Atom Distance (A) Fe OE1 Q:Glu17 2.30 Fe OE2 Q:Glu17 3.47 Fe CD Q:Glu17 3.24 Fe CG Q:Glu17 4.61 Fe OE1 Q:Glu50 2.25 Fe CB Q:Glu50 4.88 Fe OE2 Q:Glu50 3.48 Fe CD Q:Glu50 3.22 Fe CG Q:Glu50 4.58 Fe CA Q:Glu50 4.77 Fe NE2 Q:His53 4.14 Fe CB Q:His53 3.65 Fe ND1 Q:His53 2.22 Fe CD2 Q:His53 4.26 Fe CE1 Q:His53 3.03 Fe CG Q:His53 3.23 Fe CG2 Q:Ile97 4.51 Fe NE2 Q:Gln127 3.88 interactive model: Iron binding site 28 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 28 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: R: Glu17, R: Glu50, R: His53, R: Ile97, R: Gln127, R: Glu130, conact list: Atom Atom Distance (A) Fe OE1 R:Glu17 2.19 Fe CB R:Glu17 4.91 Fe OE2 R:Glu17 3.30 Fe CD R:Glu17 3.09 Fe CG R:Glu17 4.47 Fe OE1 R:Glu50 2.20 Fe CB R:Glu50 4.81 Fe OE2 R:Glu50 3.49 Fe CD R:Glu50 3.19 Fe CG R:Glu50 4.54 Fe CA R:Glu50 4.67 Fe NE2 R:His53 3.99 Fe CB R:His53 3.53 Fe ND1 R:His53 1.99 Fe CD2 R:His53 4.11 Fe CE1 R:His53 2.85 Fe CG R:His53 3.06 Fe CG2 R:Ile97 4.40 Fe OE1 R:Gln127 3.82 Fe CD R:Gln127 4.96 Fe OE1 R:Glu130 4.32 interactive model: Iron binding site 29 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 29 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: S: Glu17, S: Glu50, S: His53, S: Ile97, S: Gln127, conact list: Atom Atom Distance (A) Fe OE1 S:Glu17 2.29 Fe CB S:Glu17 4.98 Fe OE2 S:Glu17 3.38 Fe CD S:Glu17 3.17 Fe CG S:Glu17 4.53 Fe OE1 S:Glu50 2.43 Fe OE2 S:Glu50 3.76 Fe CD S:Glu50 3.44 Fe CG S:Glu50 4.78 Fe CA S:Glu50 4.88 Fe NE2 S:His53 4.02 Fe CB S:His53 3.58 Fe ND1 S:His53 2.11 Fe CD2 S:His53 4.15 Fe CE1 S:His53 2.92 Fe CG S:His53 3.13 Fe CG2 S:Ile97 4.42 Fe NE2 S:Gln127 3.64 Fe CD S:Gln127 4.84 interactive model: Iron binding site 30 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 30 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: T: Glu17, T: Glu50, T: His53, T: Ile97, T: Gln127, conact list: Atom Atom Distance (A) Fe OE1 T:Glu17 2.01 Fe CB T:Glu17 4.74 Fe OE2 T:Glu17 3.35 Fe CD T:Glu17 3.03 Fe CG T:Glu17 4.38 Fe OE1 T:Glu50 2.13 Fe CB T:Glu50 4.85 Fe OE2 T:Glu50 3.52 Fe CD T:Glu50 3.17 Fe CG T:Glu50 4.52 Fe CA T:Glu50 4.79 Fe NE2 T:His53 4.12 Fe CB T:His53 3.65 Fe ND1 T:His53 2.17 Fe CD2 T:His53 4.25 Fe CE1 T:His53 2.99 Fe CG T:His53 3.21 Fe CG2 T:Ile97 4.33 Fe NE2 T:Gln127 3.57 Fe CD T:Gln127 4.75 interactive model: Iron binding site 31 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 31 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: U: Glu17, U: Glu50, U: His53, U: Ile97, U: Gln127, U: Glu130, conact list: Atom Atom Distance (A) Fe OE1 U:Glu17 2.27 Fe CB U:Glu17 4.93 Fe OE2 U:Glu17 3.37 Fe CD U:Glu17 3.15 Fe CG U:Glu17 4.49 Fe OE1 U:Glu50 2.31 Fe CB U:Glu50 4.85 Fe OE2 U:Glu50 3.54 Fe CD U:Glu50 3.25 Fe CG U:Glu50 4.58 Fe CA U:Glu50 4.74 Fe NE2 U:His53 4.13 Fe CB U:His53 3.59 Fe ND1 U:His53 2.12 Fe CD2 U:His53 4.25 Fe CE1 U:His53 2.98 Fe CG U:His53 3.18 Fe CG2 U:Ile97 4.55 Fe NE2 U:Gln127 3.85 Fe OE1 U:Glu130 4.98 interactive model: Iron binding site 32 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 32 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: V: Glu17, V: Glu50, V: His53, V: Ile97, V: Gln127, conact list: Atom Atom Distance (A) Fe OE1 V:Glu17 2.09 Fe CB V:Glu17 4.75 Fe OE2 V:Glu17 3.27 Fe CD V:Glu17 2.97 Fe CG V:Glu17 4.26 Fe OE1 V:Glu50 2.22 Fe CB V:Glu50 4.83 Fe OE2 V:Glu50 3.70 Fe CD V:Glu50 3.30 Fe CG V:Glu50 4.59 Fe CA V:Glu50 4.74 Fe NE2 V:His53 4.14 Fe CB V:His53 3.48 Fe ND1 V:His53 2.10 Fe CD2 V:His53 4.21 Fe CE1 V:His53 3.02 Fe CG V:His53 3.12 Fe CA V:His53 4.98 Fe CG2 V:Ile97 4.43 Fe NE2 V:Gln127 3.99 interactive model: Iron binding site 33 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 33 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: W: Glu17, W: Glu50, W: His53, W: Ile97, W: Gln127, W: Glu130, conact list: Atom Atom Distance (A) Fe OE1 W:Glu17 2.10 Fe CB W:Glu17 4.82 Fe OE2 W:Glu17 3.31 Fe CD W:Glu17 3.04 Fe CG W:Glu17 4.38 Fe OE1 W:Glu50 2.25 Fe CB W:Glu50 4.87 Fe OE2 W:Glu50 3.55 Fe CD W:Glu50 3.24 Fe CG W:Glu50 4.59 Fe CA W:Glu50 4.80 Fe NE2 W:His53 4.13 Fe CB W:His53 3.54 Fe ND1 W:His53 2.10 Fe CD2 W:His53 4.23 Fe CE1 W:His53 2.99 Fe CG W:His53 3.15 Fe CG2 W:Ile97 4.19 Fe NE2 W:Gln127 3.82 Fe OE1 W:Glu130 4.99 interactive model: Iron binding site 34 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 34 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: X: Glu17, X: Glu50, X: His53, X: Ile97, X: Gln127, X: Glu130, conact list: Atom Atom Distance (A) Fe OE1 X:Glu17 2.39 Fe OE2 X:Glu17 3.52 Fe CD X:Glu17 3.29 Fe CG X:Glu17 4.64 Fe OE1 X:Glu50 2.32 Fe CB X:Glu50 4.96 Fe OE2 X:Glu50 3.66 Fe CD X:Glu50 3.35 Fe CG X:Glu50 4.68 Fe CA X:Glu50 4.84 Fe NE2 X:His53 4.03 Fe CB X:His53 3.73 Fe ND1 X:His53 2.10 Fe CD2 X:His53 4.22 Fe CE1 X:His53 2.85 Fe CG X:His53 3.23 Fe CG2 X:Ile97 4.38 Fe NE2 X:Gln127 3.56 Fe CD X:Gln127 4.78 Fe OE2 X:Glu130 3.76 Fe CD X:Glu130 4.80 interactive model: Iron binding site 35 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 35 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: Y: Glu17, Y: Glu50, Y: His53, Y: Ile97, Y: Gln127, Y: Hoh2007, conact list: Atom Atom Distance (A) Fe OE1 Y:Glu17 2.38 Fe OE2 Y:Glu17 3.50 Fe CD Y:Glu17 3.27 Fe CG Y:Glu17 4.60 Fe OE1 Y:Glu50 2.26 Fe CB Y:Glu50 4.85 Fe OE2 Y:Glu50 3.56 Fe CD Y:Glu50 3.26 Fe CG Y:Glu50 4.60 Fe CA Y:Glu50 4.72 Fe NE2 Y:His53 4.02 Fe CB Y:His53 3.53 Fe ND1 Y:His53 2.02 Fe CD2 Y:His53 4.13 Fe CE1 Y:His53 2.88 Fe CG Y:His53 3.08 Fe CG2 Y:Ile97 4.57 Fe NE2 Y:Gln127 3.50 Fe CD Y:Gln127 4.82 Fe O Y:Hoh2007 2.91 interactive model: Iron binding site 36 out of 36 in 2jd6 Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 36 of Iron in the PDB 2jd6. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Iron atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: Z: Glu17, Z: Glu50, Z: His53, Z: Ile97, Z: Gln127, Z: Glu130, conact list: Atom Atom Distance (A) Fe OE1 Z:Glu17 2.20 Fe CB Z:Glu17 4.84 Fe OE2 Z:Glu17 3.50 Fe CD Z:Glu17 3.19 Fe CG Z:Glu17 4.53 Fe OE1 Z:Glu50 2.14 Fe CB Z:Glu50 4.85 Fe OE2 Z:Glu50 3.51 Fe CD Z:Glu50 3.16 Fe CG Z:Glu50 4.51 Fe CA Z:Glu50 4.70 Fe NE2 Z:His53 4.24 Fe CB Z:His53 3.76 Fe ND1 Z:His53 2.24 Fe CD2 Z:His53 4.39 Fe CE1 Z:His53 3.06 Fe CG Z:His53 3.34 Fe CG2 Z:Ile97 4.43 Fe NE2 Z:Gln127 3.56 Fe CD Z:Gln127 4.83 Fe OE1 Z:Glu130 4.84 interactive model: