Iron in PDB 2jqr: Solution Model of Crosslinked Complex of Cytochrome C and Adrenodoxin
Iron Binding Sites:
The binding sites of Iron atom in the Solution Model of Crosslinked Complex of Cytochrome C and Adrenodoxin
(pdb code 2jqr). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the
Solution Model of Crosslinked Complex of Cytochrome C and Adrenodoxin, PDB code: 2jqr:
Jump to Iron binding site number:
1;
2;
3;
Iron binding site 1 out
of 3 in 2jqr
Go back to
Iron Binding Sites List in 2jqr
Iron binding site 1 out
of 3 in the Solution Model of Crosslinked Complex of Cytochrome C and Adrenodoxin
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Solution Model of Crosslinked Complex of Cytochrome C and Adrenodoxin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe104
b:0.0
occ:1.00
|
FE
|
A:HEC104
|
0.0
|
0.0
|
1.0
|
NA
|
A:HEC104
|
2.0
|
0.0
|
1.0
|
NE2
|
A:HIS18
|
2.0
|
0.0
|
1.0
|
NC
|
A:HEC104
|
2.0
|
0.0
|
1.0
|
ND
|
A:HEC104
|
2.0
|
0.0
|
1.0
|
NB
|
A:HEC104
|
2.0
|
0.0
|
1.0
|
SD
|
A:MET80
|
2.4
|
0.0
|
1.0
|
CE1
|
A:HIS18
|
3.0
|
0.0
|
1.0
|
C4B
|
A:HEC104
|
3.0
|
0.0
|
1.0
|
C4D
|
A:HEC104
|
3.0
|
0.0
|
1.0
|
C1B
|
A:HEC104
|
3.0
|
0.0
|
1.0
|
CD2
|
A:HIS18
|
3.0
|
0.0
|
1.0
|
C1A
|
A:HEC104
|
3.0
|
0.0
|
1.0
|
C1C
|
A:HEC104
|
3.0
|
0.0
|
1.0
|
C1D
|
A:HEC104
|
3.0
|
0.0
|
1.0
|
C4C
|
A:HEC104
|
3.1
|
0.0
|
1.0
|
C4A
|
A:HEC104
|
3.1
|
0.0
|
1.0
|
HE2
|
A:MET80
|
3.2
|
0.0
|
1.0
|
HE1
|
A:HIS18
|
3.2
|
0.0
|
1.0
|
HD2
|
A:HIS18
|
3.3
|
0.0
|
1.0
|
CHD
|
A:HEC104
|
3.3
|
0.0
|
1.0
|
CE
|
A:MET80
|
3.3
|
0.0
|
1.0
|
HG3
|
A:MET80
|
3.3
|
0.0
|
1.0
|
CHC
|
A:HEC104
|
3.3
|
0.0
|
1.0
|
CHB
|
A:HEC104
|
3.4
|
0.0
|
1.0
|
CHA
|
A:HEC104
|
3.4
|
0.0
|
1.0
|
CG
|
A:MET80
|
3.5
|
0.0
|
1.0
|
HE1
|
A:MET80
|
3.7
|
0.0
|
1.0
|
HB2
|
A:MET80
|
3.8
|
0.0
|
1.0
|
ND1
|
A:HIS18
|
4.1
|
0.0
|
1.0
|
CG
|
A:HIS18
|
4.2
|
0.0
|
1.0
|
C2B
|
A:HEC104
|
4.2
|
0.0
|
1.0
|
C2D
|
A:HEC104
|
4.2
|
0.0
|
1.0
|
C3D
|
A:HEC104
|
4.2
|
0.0
|
1.0
|
HE3
|
A:MET80
|
4.2
|
0.0
|
1.0
|
CB
|
A:MET80
|
4.3
|
0.0
|
1.0
|
C3A
|
A:HEC104
|
4.3
|
0.0
|
1.0
|
C3B
|
A:HEC104
|
4.3
|
0.0
|
1.0
|
C3C
|
A:HEC104
|
4.3
|
0.0
|
1.0
|
C2A
|
A:HEC104
|
4.3
|
0.0
|
1.0
|
C2C
|
A:HEC104
|
4.3
|
0.0
|
1.0
|
HG2
|
A:MET80
|
4.3
|
0.0
|
1.0
|
HHD
|
A:HEC104
|
4.4
|
0.0
|
1.0
|
HHC
|
A:HEC104
|
4.4
|
0.0
|
1.0
|
HHA
|
A:HEC104
|
4.5
|
0.0
|
1.0
|
HHB
|
A:HEC104
|
4.5
|
0.0
|
1.0
|
HA3
|
A:GLY29
|
4.6
|
0.0
|
1.0
|
HE2
|
A:TYR67
|
4.6
|
0.0
|
1.0
|
HD2
|
A:PRO30
|
4.7
|
0.0
|
1.0
|
HD23
|
A:LEU32
|
4.7
|
0.0
|
1.0
|
HB2
|
A:CYS17
|
4.7
|
0.0
|
1.0
|
OH
|
A:TYR67
|
4.9
|
0.0
|
1.0
|
HB3
|
A:CYS17
|
4.9
|
0.0
|
1.0
|
HD1
|
A:HIS18
|
4.9
|
0.0
|
1.0
|
HB3
|
A:MET80
|
5.0
|
0.0
|
1.0
|
|
Iron binding site 2 out
of 3 in 2jqr
Go back to
Iron Binding Sites List in 2jqr
Iron binding site 2 out
of 3 in the Solution Model of Crosslinked Complex of Cytochrome C and Adrenodoxin
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Solution Model of Crosslinked Complex of Cytochrome C and Adrenodoxin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe109
b:0.0
occ:1.00
|
FE1
|
B:FES109
|
0.0
|
0.0
|
1.0
|
S1
|
B:FES109
|
2.2
|
0.0
|
1.0
|
S2
|
B:FES109
|
2.2
|
0.0
|
1.0
|
SG
|
B:CYS52
|
2.3
|
0.0
|
1.0
|
SG
|
B:CYS46
|
2.3
|
0.0
|
1.0
|
FE2
|
B:FES109
|
2.7
|
0.0
|
1.0
|
H
|
B:CYS46
|
3.1
|
0.0
|
1.0
|
H
|
B:CYS52
|
3.3
|
0.0
|
1.0
|
H
|
B:GLY48
|
3.4
|
0.0
|
1.0
|
H
|
B:ALA51
|
3.5
|
0.0
|
1.0
|
CB
|
B:CYS52
|
3.5
|
0.0
|
1.0
|
CB
|
B:CYS46
|
3.6
|
0.0
|
1.0
|
HB3
|
B:CYS46
|
3.6
|
0.0
|
1.0
|
HB3
|
B:CYS52
|
3.6
|
0.0
|
1.0
|
HA2
|
B:GLY48
|
3.7
|
0.0
|
1.0
|
H
|
B:THR49
|
3.7
|
0.0
|
1.0
|
N
|
B:CYS52
|
3.8
|
0.0
|
1.0
|
H
|
B:LEU50
|
3.8
|
0.0
|
1.0
|
N
|
B:CYS46
|
3.9
|
0.0
|
1.0
|
CA
|
B:CYS52
|
4.0
|
0.0
|
1.0
|
O
|
B:CYS52
|
4.0
|
0.0
|
1.0
|
C
|
B:CYS52
|
4.0
|
0.0
|
1.0
|
CA
|
B:CYS46
|
4.1
|
0.0
|
1.0
|
N
|
B:GLY48
|
4.2
|
0.0
|
1.0
|
HA
|
B:LEU50
|
4.2
|
0.0
|
1.0
|
N
|
B:ALA51
|
4.3
|
0.0
|
1.0
|
SG
|
B:CYS55
|
4.4
|
0.0
|
1.0
|
HA2
|
B:GLY44
|
4.4
|
0.0
|
1.0
|
HB3
|
B:CYS55
|
4.4
|
0.0
|
1.0
|
CA
|
B:GLY48
|
4.4
|
0.0
|
1.0
|
HB2
|
B:CYS52
|
4.4
|
0.0
|
1.0
|
N
|
B:LEU50
|
4.4
|
0.0
|
1.0
|
H
|
B:THR54
|
4.4
|
0.0
|
1.0
|
HB2
|
B:CYS46
|
4.5
|
0.0
|
1.0
|
HG1
|
B:THR54
|
4.5
|
0.0
|
1.0
|
C
|
B:CYS46
|
4.5
|
0.0
|
1.0
|
N
|
B:THR49
|
4.5
|
0.0
|
1.0
|
H
|
B:CYS55
|
4.5
|
0.0
|
1.0
|
H
|
B:GLU47
|
4.5
|
0.0
|
1.0
|
SG
|
B:CYS92
|
4.5
|
0.0
|
1.0
|
N
|
B:GLU47
|
4.6
|
0.0
|
1.0
|
C
|
B:ALA51
|
4.7
|
0.0
|
1.0
|
HG1
|
B:THR49
|
4.7
|
0.0
|
1.0
|
HB1
|
B:ALA45
|
4.8
|
0.0
|
1.0
|
OG1
|
B:THR54
|
4.8
|
0.0
|
1.0
|
CA
|
B:LEU50
|
4.8
|
0.0
|
1.0
|
H
|
B:ALA45
|
4.8
|
0.0
|
1.0
|
N
|
B:ALA45
|
4.9
|
0.0
|
1.0
|
C
|
B:GLY48
|
4.9
|
0.0
|
1.0
|
N
|
B:SER53
|
4.9
|
0.0
|
1.0
|
HD23
|
B:LEU50
|
4.9
|
0.0
|
1.0
|
CB
|
B:CYS55
|
5.0
|
0.0
|
1.0
|
|
Iron binding site 3 out
of 3 in 2jqr
Go back to
Iron Binding Sites List in 2jqr
Iron binding site 3 out
of 3 in the Solution Model of Crosslinked Complex of Cytochrome C and Adrenodoxin
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Solution Model of Crosslinked Complex of Cytochrome C and Adrenodoxin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe109
b:0.0
occ:1.00
|
FE2
|
B:FES109
|
0.0
|
0.0
|
1.0
|
S2
|
B:FES109
|
2.2
|
0.0
|
1.0
|
S1
|
B:FES109
|
2.2
|
0.0
|
1.0
|
SG
|
B:CYS55
|
2.3
|
0.0
|
1.0
|
SG
|
B:CYS92
|
2.3
|
0.0
|
1.0
|
FE1
|
B:FES109
|
2.7
|
0.0
|
1.0
|
HB3
|
B:CYS92
|
3.0
|
0.0
|
1.0
|
HA2
|
B:GLY48
|
3.1
|
0.0
|
1.0
|
HB3
|
B:CYS55
|
3.1
|
0.0
|
1.0
|
CB
|
B:CYS92
|
3.3
|
0.0
|
1.0
|
CB
|
B:CYS55
|
3.3
|
0.0
|
1.0
|
H
|
B:CYS92
|
3.4
|
0.0
|
1.0
|
HB3
|
B:LEU90
|
3.5
|
0.0
|
1.0
|
HB2
|
B:CYS55
|
3.9
|
0.0
|
1.0
|
H
|
B:GLY48
|
3.9
|
0.0
|
1.0
|
HD23
|
B:LEU50
|
4.0
|
0.0
|
1.0
|
HB2
|
B:CYS92
|
4.0
|
0.0
|
1.0
|
H
|
B:CYS55
|
4.1
|
0.0
|
1.0
|
H
|
B:LEU50
|
4.1
|
0.0
|
1.0
|
CA
|
B:GLY48
|
4.1
|
0.0
|
1.0
|
N
|
B:CYS92
|
4.2
|
0.0
|
1.0
|
HD21
|
B:LEU30
|
4.3
|
0.0
|
1.0
|
CA
|
B:CYS92
|
4.3
|
0.0
|
1.0
|
HD12
|
B:LEU90
|
4.3
|
0.0
|
1.0
|
SG
|
B:CYS52
|
4.4
|
0.0
|
1.0
|
HA2
|
B:GLY44
|
4.5
|
0.0
|
1.0
|
N
|
B:GLY48
|
4.5
|
0.0
|
1.0
|
SG
|
B:CYS46
|
4.5
|
0.0
|
1.0
|
HA
|
B:LEU50
|
4.5
|
0.0
|
1.0
|
CB
|
B:LEU90
|
4.6
|
0.0
|
1.0
|
CA
|
B:CYS55
|
4.6
|
0.0
|
1.0
|
HD23
|
B:LEU90
|
4.6
|
0.0
|
1.0
|
N
|
B:CYS55
|
4.7
|
0.0
|
1.0
|
HA3
|
B:GLY48
|
4.7
|
0.0
|
1.0
|
H
|
B:THR49
|
4.7
|
0.0
|
1.0
|
HD11
|
B:LEU90
|
4.8
|
0.0
|
1.0
|
HE21
|
B:GLN93
|
4.8
|
0.0
|
1.0
|
HB2
|
B:LEU90
|
4.9
|
0.0
|
1.0
|
HG2
|
B:GLN93
|
4.9
|
0.0
|
1.0
|
C
|
B:GLY48
|
4.9
|
0.0
|
1.0
|
O
|
B:CYS52
|
4.9
|
0.0
|
1.0
|
CD1
|
B:LEU90
|
5.0
|
0.0
|
1.0
|
N
|
B:LEU50
|
5.0
|
0.0
|
1.0
|
HB2
|
B:LEU30
|
5.0
|
0.0
|
1.0
|
|
Reference:
X.Xu,
W.Reinle,
F.Hannemann,
P.V.Konarev,
D.I.Svergun,
R.Bernhardt,
M.Ubbink.
Dynamics in A Pure Encounter Complex of Two Proteins Studied By Solution Scattering and Paramagnetic uc(Nmr) Spectroscopy J.Am.Chem.Soc. V. 130 6395 2008.
ISSN: ISSN 0002-7863
PubMed: 18439013
DOI: 10.1021/JA7101357
Page generated: Sat Aug 3 23:52:12 2024
|