Iron in PDB 2m56: The Structure of the Complex of Cytochrome P450CAM and Its Electron Donor Putidaredoxin Determined By Paramagnetic uc(Nmr) Spectroscopy
Enzymatic activity of The Structure of the Complex of Cytochrome P450CAM and Its Electron Donor Putidaredoxin Determined By Paramagnetic uc(Nmr) Spectroscopy
All present enzymatic activity of The Structure of the Complex of Cytochrome P450CAM and Its Electron Donor Putidaredoxin Determined By Paramagnetic uc(Nmr) Spectroscopy:
1.14.15.1;
Iron Binding Sites:
The binding sites of Iron atom in the The Structure of the Complex of Cytochrome P450CAM and Its Electron Donor Putidaredoxin Determined By Paramagnetic uc(Nmr) Spectroscopy
(pdb code 2m56). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the
The Structure of the Complex of Cytochrome P450CAM and Its Electron Donor Putidaredoxin Determined By Paramagnetic uc(Nmr) Spectroscopy, PDB code: 2m56:
Jump to Iron binding site number:
1;
2;
3;
Iron binding site 1 out
of 3 in 2m56
Go back to
Iron Binding Sites List in 2m56
Iron binding site 1 out
of 3 in the The Structure of the Complex of Cytochrome P450CAM and Its Electron Donor Putidaredoxin Determined By Paramagnetic uc(Nmr) Spectroscopy
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of The Structure of the Complex of Cytochrome P450CAM and Its Electron Donor Putidaredoxin Determined By Paramagnetic uc(Nmr) Spectroscopy within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe501
b:0.0
occ:1.00
|
FE
|
A:HEM501
|
0.0
|
0.0
|
1.0
|
ND
|
A:HEM501
|
2.0
|
0.0
|
1.0
|
NB
|
A:HEM501
|
2.0
|
0.0
|
1.0
|
NA
|
A:HEM501
|
2.0
|
0.0
|
1.0
|
NC
|
A:HEM501
|
2.0
|
0.0
|
1.0
|
SG
|
A:CYS357
|
2.3
|
0.0
|
1.0
|
C1D
|
A:HEM501
|
3.0
|
0.0
|
1.0
|
C4D
|
A:HEM501
|
3.0
|
0.0
|
1.0
|
C1C
|
A:HEM501
|
3.0
|
0.0
|
1.0
|
C4B
|
A:HEM501
|
3.0
|
0.0
|
1.0
|
C4C
|
A:HEM501
|
3.1
|
0.0
|
1.0
|
C1B
|
A:HEM501
|
3.1
|
0.0
|
1.0
|
C1A
|
A:HEM501
|
3.1
|
0.0
|
1.0
|
C4A
|
A:HEM501
|
3.1
|
0.0
|
1.0
|
HB2
|
A:CYS357
|
3.3
|
0.0
|
1.0
|
CB
|
A:CYS357
|
3.4
|
0.0
|
1.0
|
HA
|
A:CYS357
|
3.4
|
0.0
|
1.0
|
CHC
|
A:HEM501
|
3.4
|
0.0
|
1.0
|
CHA
|
A:HEM501
|
3.4
|
0.0
|
1.0
|
CHD
|
A:HEM501
|
3.4
|
0.0
|
1.0
|
CHB
|
A:HEM501
|
3.5
|
0.0
|
1.0
|
H
|
A:GLY359
|
3.8
|
0.0
|
1.0
|
CA
|
A:CYS357
|
3.9
|
0.0
|
1.0
|
C5
|
A:CAM502
|
4.2
|
19.5
|
1.0
|
HD1
|
A:PHE350
|
4.2
|
0.0
|
1.0
|
H
|
A:LEU358
|
4.2
|
0.0
|
1.0
|
C2D
|
A:HEM501
|
4.2
|
0.0
|
1.0
|
C3D
|
A:HEM501
|
4.3
|
0.0
|
1.0
|
C3B
|
A:HEM501
|
4.3
|
0.0
|
1.0
|
C2C
|
A:HEM501
|
4.3
|
0.0
|
1.0
|
C3C
|
A:HEM501
|
4.3
|
0.0
|
1.0
|
C2B
|
A:HEM501
|
4.3
|
0.0
|
1.0
|
C3A
|
A:HEM501
|
4.3
|
0.0
|
1.0
|
C2A
|
A:HEM501
|
4.3
|
0.0
|
1.0
|
HG23
|
A:THR252
|
4.3
|
0.0
|
1.0
|
HB3
|
A:CYS357
|
4.3
|
0.0
|
1.0
|
C4
|
A:CAM502
|
4.7
|
19.5
|
1.0
|
C
|
A:CYS357
|
4.7
|
0.0
|
1.0
|
N
|
A:GLY359
|
4.7
|
0.0
|
1.0
|
N
|
A:LEU358
|
4.7
|
0.0
|
1.0
|
HA3
|
A:GLY359
|
4.8
|
0.0
|
1.0
|
|
Iron binding site 2 out
of 3 in 2m56
Go back to
Iron Binding Sites List in 2m56
Iron binding site 2 out
of 3 in the The Structure of the Complex of Cytochrome P450CAM and Its Electron Donor Putidaredoxin Determined By Paramagnetic uc(Nmr) Spectroscopy
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of The Structure of the Complex of Cytochrome P450CAM and Its Electron Donor Putidaredoxin Determined By Paramagnetic uc(Nmr) Spectroscopy within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:0.0
occ:1.00
|
FE1
|
B:FES201
|
0.0
|
0.0
|
1.0
|
SG
|
B:CYS45
|
1.9
|
0.0
|
1.0
|
SG
|
B:CYS39
|
2.1
|
0.0
|
1.0
|
S1
|
B:FES201
|
2.2
|
0.0
|
1.0
|
S2
|
B:FES201
|
2.2
|
0.0
|
1.0
|
FE2
|
B:FES201
|
2.7
|
0.0
|
1.0
|
HB3
|
B:CYS39
|
3.2
|
0.0
|
1.0
|
H
|
B:CYS39
|
3.2
|
0.0
|
1.0
|
CB
|
B:CYS39
|
3.3
|
0.0
|
1.0
|
H
|
B:CYS45
|
3.3
|
0.0
|
1.0
|
H
|
B:GLY41
|
3.3
|
0.0
|
1.0
|
CB
|
B:CYS45
|
3.5
|
0.0
|
1.0
|
H
|
B:SER44
|
3.5
|
0.0
|
1.0
|
HB3
|
B:CYS45
|
3.7
|
0.0
|
1.0
|
N
|
B:CYS45
|
3.8
|
0.0
|
1.0
|
N
|
B:CYS39
|
3.9
|
0.0
|
1.0
|
H
|
B:ALA43
|
3.9
|
0.0
|
1.0
|
HA2
|
B:GLY37
|
3.9
|
0.0
|
1.0
|
HA2
|
B:GLY41
|
4.0
|
0.0
|
1.0
|
O
|
B:CYS45
|
4.0
|
0.0
|
1.0
|
CA
|
B:CYS45
|
4.0
|
0.0
|
1.0
|
C
|
B:CYS45
|
4.1
|
0.0
|
1.0
|
HB2
|
B:CYS39
|
4.1
|
0.0
|
1.0
|
CA
|
B:CYS39
|
4.1
|
0.0
|
1.0
|
H
|
B:SER42
|
4.1
|
0.0
|
1.0
|
N
|
B:GLY41
|
4.1
|
0.0
|
1.0
|
H
|
B:GLY40
|
4.1
|
0.0
|
1.0
|
HB2
|
B:CYS45
|
4.2
|
0.0
|
1.0
|
HA
|
B:ALA43
|
4.2
|
0.0
|
1.0
|
H
|
B:THR47
|
4.3
|
0.0
|
1.0
|
N
|
B:SER44
|
4.3
|
0.0
|
1.0
|
SG
|
B:CYS48
|
4.4
|
0.0
|
1.0
|
HB3
|
B:CYS48
|
4.4
|
0.0
|
1.0
|
N
|
B:ALA43
|
4.5
|
0.0
|
1.0
|
H
|
B:ASP38
|
4.5
|
0.0
|
1.0
|
N
|
B:GLY40
|
4.5
|
0.0
|
1.0
|
C
|
B:CYS39
|
4.5
|
0.0
|
1.0
|
CA
|
B:GLY41
|
4.5
|
0.0
|
1.0
|
HG1
|
B:THR47
|
4.5
|
0.0
|
1.0
|
SG
|
B:CYS86
|
4.6
|
0.0
|
1.0
|
HE1
|
B:MET24
|
4.7
|
0.0
|
1.0
|
N
|
B:SER42
|
4.7
|
0.0
|
1.0
|
N
|
B:ASP38
|
4.7
|
0.0
|
1.0
|
CA
|
B:ALA43
|
4.8
|
0.0
|
1.0
|
C
|
B:SER44
|
4.8
|
0.0
|
1.0
|
N
|
B:ALA46
|
4.8
|
0.0
|
1.0
|
OG1
|
B:THR47
|
4.8
|
0.0
|
1.0
|
HE3
|
B:MET24
|
4.8
|
0.0
|
1.0
|
CA
|
B:GLY37
|
4.9
|
0.0
|
1.0
|
HB3
|
B:CYS86
|
4.9
|
0.0
|
1.0
|
C
|
B:GLY37
|
4.9
|
0.0
|
1.0
|
C
|
B:GLY41
|
5.0
|
0.0
|
1.0
|
C
|
B:ASP38
|
5.0
|
0.0
|
1.0
|
|
Iron binding site 3 out
of 3 in 2m56
Go back to
Iron Binding Sites List in 2m56
Iron binding site 3 out
of 3 in the The Structure of the Complex of Cytochrome P450CAM and Its Electron Donor Putidaredoxin Determined By Paramagnetic uc(Nmr) Spectroscopy
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of The Structure of the Complex of Cytochrome P450CAM and Its Electron Donor Putidaredoxin Determined By Paramagnetic uc(Nmr) Spectroscopy within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:0.0
occ:1.00
|
FE2
|
B:FES201
|
0.0
|
0.0
|
1.0
|
S1
|
B:FES201
|
2.2
|
0.0
|
1.0
|
S2
|
B:FES201
|
2.3
|
0.0
|
1.0
|
SG
|
B:CYS86
|
2.3
|
0.0
|
1.0
|
SG
|
B:CYS48
|
2.3
|
0.0
|
1.0
|
HB3
|
B:CYS86
|
2.6
|
0.0
|
1.0
|
FE1
|
B:FES201
|
2.7
|
0.0
|
1.0
|
CB
|
B:CYS86
|
3.0
|
0.0
|
1.0
|
HB3
|
B:LEU84
|
3.1
|
0.0
|
1.0
|
HB3
|
B:CYS48
|
3.2
|
0.0
|
1.0
|
HA2
|
B:GLY41
|
3.2
|
0.0
|
1.0
|
CB
|
B:CYS48
|
3.4
|
0.0
|
1.0
|
HB2
|
B:CYS86
|
3.5
|
0.0
|
1.0
|
H
|
B:CYS86
|
3.6
|
0.0
|
1.0
|
HE3
|
B:MET24
|
3.7
|
0.0
|
1.0
|
HG3
|
B:MET24
|
3.8
|
0.0
|
1.0
|
HB2
|
B:CYS48
|
3.8
|
0.0
|
1.0
|
H
|
B:ALA43
|
4.0
|
0.0
|
1.0
|
HD22
|
B:LEU84
|
4.0
|
0.0
|
1.0
|
HA
|
B:ALA43
|
4.1
|
0.0
|
1.0
|
HA2
|
B:GLY37
|
4.2
|
0.0
|
1.0
|
SG
|
B:CYS45
|
4.2
|
0.0
|
1.0
|
CB
|
B:LEU84
|
4.2
|
0.0
|
1.0
|
CA
|
B:GLY41
|
4.2
|
0.0
|
1.0
|
N
|
B:CYS86
|
4.2
|
0.0
|
1.0
|
CA
|
B:CYS86
|
4.2
|
0.0
|
1.0
|
HD13
|
B:LEU84
|
4.3
|
0.0
|
1.0
|
SG
|
B:CYS39
|
4.3
|
0.0
|
1.0
|
H
|
B:GLY41
|
4.3
|
0.0
|
1.0
|
H
|
B:CYS48
|
4.4
|
0.0
|
1.0
|
HG2
|
B:GLN87
|
4.5
|
0.0
|
1.0
|
HE1
|
B:MET24
|
4.6
|
0.0
|
1.0
|
HB2
|
B:LEU84
|
4.6
|
0.0
|
1.0
|
CE
|
B:MET24
|
4.6
|
0.0
|
1.0
|
HE21
|
B:GLN87
|
4.7
|
0.0
|
1.0
|
N
|
B:GLY41
|
4.7
|
0.0
|
1.0
|
CA
|
B:CYS48
|
4.7
|
0.0
|
1.0
|
O
|
B:CYS45
|
4.8
|
0.0
|
1.0
|
N
|
B:ALA43
|
4.8
|
0.0
|
1.0
|
N
|
B:CYS48
|
4.8
|
0.0
|
1.0
|
CG
|
B:MET24
|
4.8
|
0.0
|
1.0
|
C
|
B:GLY41
|
4.8
|
0.0
|
1.0
|
HB2
|
B:MET24
|
4.9
|
0.0
|
1.0
|
H
|
B:CYS45
|
4.9
|
0.0
|
1.0
|
C
|
B:LEU84
|
4.9
|
0.0
|
1.0
|
CA
|
B:ALA43
|
4.9
|
0.0
|
1.0
|
CA
|
B:LEU84
|
4.9
|
0.0
|
1.0
|
HA3
|
B:GLY41
|
5.0
|
0.0
|
1.0
|
CD2
|
B:LEU84
|
5.0
|
0.0
|
1.0
|
HA
|
B:LEU84
|
5.0
|
0.0
|
1.0
|
CG
|
B:LEU84
|
5.0
|
0.0
|
1.0
|
CD1
|
B:LEU84
|
5.0
|
0.0
|
1.0
|
HA
|
B:CYS86
|
5.0
|
0.0
|
1.0
|
|
Reference:
Y.Hiruma,
M.A.Hass,
Y.Kikui,
W.M.Liu,
B.Olmez,
S.P.Skinner,
A.Blok,
A.Kloosterman,
H.Koteishi,
F.Lohr,
H.Schwalbe,
M.Nojiri,
M.Ubbink.
The Structure of the Cytochrome P450CAM-Putidaredoxin Complex Determined By Paramagnetic uc(Nmr) Spectroscopy and Crystallography. J.Mol.Biol. 2013.
ISSN: ESSN 1089-8638
PubMed: 23856620
DOI: 10.1016/J.JMB.2013.07.006
Page generated: Sun Aug 4 00:25:48 2024
|