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Iron in PDB 2mhr: Structure of Myohemerythrin in the Azidomet State at 1.7(Slash)1.3 Angstroms Resolution

Protein crystallography data

The structure of Structure of Myohemerythrin in the Azidomet State at 1.7(Slash)1.3 Angstroms Resolution, PDB code: 2mhr was solved by S.Sheriff, W.A.Hendrickson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.660, 80.170, 37.820, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Myohemerythrin in the Azidomet State at 1.7(Slash)1.3 Angstroms Resolution (pdb code 2mhr). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Structure of Myohemerythrin in the Azidomet State at 1.7(Slash)1.3 Angstroms Resolution, PDB code: 2mhr:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 2mhr

Go back to Iron Binding Sites List in 2mhr
Iron binding site 1 out of 2 in the Structure of Myohemerythrin in the Azidomet State at 1.7(Slash)1.3 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Myohemerythrin in the Azidomet State at 1.7(Slash)1.3 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe119

b:17.6
occ:1.00
FE1 A:FEO119 0.0 17.6 1.0
HE2 A:HIS77 1.1 19.0 1.0
HE2 A:HIS106 1.1 18.4 1.0
HE2 A:HIS73 1.2 19.9 1.0
O A:FEO119 1.8 16.0 1.0
OE1 A:GLU58 2.0 18.6 1.0
OD1 A:ASP111 2.1 16.3 1.0
NE2 A:HIS77 2.1 19.0 1.0
NE2 A:HIS106 2.1 18.4 1.0
NE2 A:HIS73 2.2 19.9 1.0
CD A:GLU58 3.0 14.4 1.0
CE1 A:HIS77 3.0 19.3 1.0
CG A:ASP111 3.1 16.3 1.0
CD2 A:HIS106 3.1 17.9 1.0
CD2 A:HIS77 3.1 18.0 1.0
CE1 A:HIS106 3.2 17.8 1.0
HD2 A:HIS106 3.2 17.9 1.0
HE1 A:HIS77 3.2 19.3 1.0
CE1 A:HIS73 3.2 17.8 1.0
FE2 A:FEO119 3.2 17.2 1.0
CD2 A:HIS73 3.3 19.1 1.0
OE2 A:GLU58 3.3 18.7 1.0
HD2 A:HIS77 3.3 18.0 1.0
OD2 A:ASP111 3.4 15.9 1.0
HE1 A:HIS73 3.4 17.8 1.0
HE1 A:HIS106 3.4 17.8 1.0
HD2 A:HIS73 3.4 19.1 1.0
HE2 A:HIS54 3.7 17.2 1.0
HE2 A:TYR114 3.8 15.6 1.0
HE1 A:PHE55 4.0 21.4 1.0
ND1 A:HIS77 4.2 21.6 1.0
ND1 A:HIS106 4.2 19.3 1.0
CG A:HIS77 4.2 20.3 1.0
CG A:HIS106 4.3 16.7 1.0
CG A:GLU58 4.3 18.7 1.0
ND1 A:HIS73 4.4 19.8 1.0
HD1 A:PHE55 4.4 19.9 1.0
HE2 A:HIS25 4.4 16.7 1.0
HA A:ASP111 4.4 16.8 1.0
N1 A:AZI120 4.4 17.4 1.0
CG A:HIS73 4.4 20.2 1.0
NE2 A:HIS54 4.5 17.2 1.0
CB A:ASP111 4.5 15.4 1.0
HB3 A:GLU58 4.5 19.2 1.0
HG2 A:GLU58 4.5 18.7 1.0
HG23 A:THR110 4.5 20.7 1.0
HE3 A:MET62 4.6 23.7 1.0
CE1 A:PHE55 4.6 21.4 1.0
HH A:TYR114 4.6 15.7 1.0
N2 A:AZI120 4.7 19.3 1.0
CD1 A:PHE55 4.8 19.9 1.0
HE2 A:MET62 4.8 23.7 1.0
CE2 A:TYR114 4.9 15.6 1.0
CA A:ASP111 4.9 16.8 1.0
HH2 A:TRP102 4.9 19.6 1.0
CB A:GLU58 5.0 19.2 1.0
HD2 A:HIS54 5.0 16.9 1.0

Iron binding site 2 out of 2 in 2mhr

Go back to Iron Binding Sites List in 2mhr
Iron binding site 2 out of 2 in the Structure of Myohemerythrin in the Azidomet State at 1.7(Slash)1.3 Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of Myohemerythrin in the Azidomet State at 1.7(Slash)1.3 Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe119

b:17.2
occ:1.00
FE2 A:FEO119 0.0 17.2 1.0
HE2 A:HIS54 1.1 17.2 1.0
HE2 A:HIS25 1.3 16.7 1.0
O A:FEO119 1.8 16.0 1.0
OD2 A:ASP111 2.1 15.9 1.0
N1 A:AZI120 2.1 17.4 1.0
NE2 A:HIS54 2.2 17.2 1.0
OE2 A:GLU58 2.2 18.7 1.0
NE2 A:HIS25 2.2 16.7 1.0
N2 A:AZI120 3.0 19.3 1.0
CE1 A:HIS54 3.0 17.5 1.0
CG A:ASP111 3.1 16.3 1.0
CD A:GLU58 3.1 14.4 1.0
CD2 A:HIS25 3.2 16.3 1.0
CD2 A:HIS54 3.2 16.9 1.0
HE1 A:HIS54 3.2 17.5 1.0
FE1 A:FEO119 3.2 17.6 1.0
HD2 A:HIS106 3.2 17.9 1.0
CE1 A:HIS25 3.2 17.4 1.0
HD2 A:HIS25 3.3 16.3 1.0
OD1 A:ASP111 3.3 16.3 1.0
HD2 A:HIS54 3.4 16.9 1.0
OE1 A:GLU58 3.4 18.6 1.0
HH A:TYR114 3.5 15.7 1.0
HE1 A:HIS25 3.5 17.4 1.0
HG12 A:ILE107 3.7 15.7 1.0
HE2 A:HIS106 3.7 18.4 1.0
HE2 A:HIS77 3.8 19.0 1.0
N3 A:AZI120 4.0 21.6 1.0
HE1 A:PHE55 4.0 21.4 1.0
CD2 A:HIS106 4.1 17.9 1.0
ND1 A:HIS54 4.2 18.7 1.0
NE2 A:HIS106 4.3 18.4 1.0
OH A:TYR114 4.3 15.7 1.0
CG A:HIS54 4.3 17.9 1.0
CG A:HIS25 4.3 15.6 1.0
CB A:ASP111 4.3 15.4 1.0
ND1 A:HIS25 4.3 14.9 1.0
HE2 A:HIS73 4.4 19.9 1.0
HB3 A:ASP111 4.4 15.4 1.0
CG A:GLU58 4.4 18.7 1.0
HE2 A:TYR114 4.6 15.6 1.0
HB2 A:GLU58 4.6 19.2 1.0
HG3 A:GLU58 4.6 18.7 1.0
HD1 A:PHE55 4.6 19.9 1.0
HB2 A:ASP111 4.6 15.4 1.0
NE2 A:HIS77 4.6 19.0 1.0
CG1 A:ILE107 4.7 15.7 1.0
HA A:ILE107 4.7 15.1 1.0
HG13 A:ILE107 4.7 15.7 1.0
HD13 A:ILE28 4.8 17.8 1.0
CE1 A:PHE55 4.9 21.4 1.0
HD12 A:ILE107 5.0 16.9 1.0

Reference:

S.Sheriff, W.A.Hendrickson, J.L.Smith. Structure of Myohemerythrin in the Azidomet State at 1.7/1.3 A Resolution. J.Mol.Biol. V. 197 273 1987.
ISSN: ISSN 0022-2836
PubMed: 3681996
DOI: 10.1016/0022-2836(87)90124-0
Page generated: Sun Aug 4 00:29:38 2024

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