Iron in PDB 2mhr: Structure of Myohemerythrin in the Azidomet State at 1.7(Slash)1.3 Angstroms Resolution
Protein crystallography data
The structure of Structure of Myohemerythrin in the Azidomet State at 1.7(Slash)1.3 Angstroms Resolution, PDB code: 2mhr
was solved by
S.Sheriff,
W.A.Hendrickson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
10.00 /
1.30
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
41.660,
80.170,
37.820,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
n/a /
n/a
|
Iron Binding Sites:
The binding sites of Iron atom in the Structure of Myohemerythrin in the Azidomet State at 1.7(Slash)1.3 Angstroms Resolution
(pdb code 2mhr). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Structure of Myohemerythrin in the Azidomet State at 1.7(Slash)1.3 Angstroms Resolution, PDB code: 2mhr:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 2mhr
Go back to
Iron Binding Sites List in 2mhr
Iron binding site 1 out
of 2 in the Structure of Myohemerythrin in the Azidomet State at 1.7(Slash)1.3 Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Structure of Myohemerythrin in the Azidomet State at 1.7(Slash)1.3 Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe119
b:17.6
occ:1.00
|
FE1
|
A:FEO119
|
0.0
|
17.6
|
1.0
|
HE2
|
A:HIS77
|
1.1
|
19.0
|
1.0
|
HE2
|
A:HIS106
|
1.1
|
18.4
|
1.0
|
HE2
|
A:HIS73
|
1.2
|
19.9
|
1.0
|
O
|
A:FEO119
|
1.8
|
16.0
|
1.0
|
OE1
|
A:GLU58
|
2.0
|
18.6
|
1.0
|
OD1
|
A:ASP111
|
2.1
|
16.3
|
1.0
|
NE2
|
A:HIS77
|
2.1
|
19.0
|
1.0
|
NE2
|
A:HIS106
|
2.1
|
18.4
|
1.0
|
NE2
|
A:HIS73
|
2.2
|
19.9
|
1.0
|
CD
|
A:GLU58
|
3.0
|
14.4
|
1.0
|
CE1
|
A:HIS77
|
3.0
|
19.3
|
1.0
|
CG
|
A:ASP111
|
3.1
|
16.3
|
1.0
|
CD2
|
A:HIS106
|
3.1
|
17.9
|
1.0
|
CD2
|
A:HIS77
|
3.1
|
18.0
|
1.0
|
CE1
|
A:HIS106
|
3.2
|
17.8
|
1.0
|
HD2
|
A:HIS106
|
3.2
|
17.9
|
1.0
|
HE1
|
A:HIS77
|
3.2
|
19.3
|
1.0
|
CE1
|
A:HIS73
|
3.2
|
17.8
|
1.0
|
FE2
|
A:FEO119
|
3.2
|
17.2
|
1.0
|
CD2
|
A:HIS73
|
3.3
|
19.1
|
1.0
|
OE2
|
A:GLU58
|
3.3
|
18.7
|
1.0
|
HD2
|
A:HIS77
|
3.3
|
18.0
|
1.0
|
OD2
|
A:ASP111
|
3.4
|
15.9
|
1.0
|
HE1
|
A:HIS73
|
3.4
|
17.8
|
1.0
|
HE1
|
A:HIS106
|
3.4
|
17.8
|
1.0
|
HD2
|
A:HIS73
|
3.4
|
19.1
|
1.0
|
HE2
|
A:HIS54
|
3.7
|
17.2
|
1.0
|
HE2
|
A:TYR114
|
3.8
|
15.6
|
1.0
|
HE1
|
A:PHE55
|
4.0
|
21.4
|
1.0
|
ND1
|
A:HIS77
|
4.2
|
21.6
|
1.0
|
ND1
|
A:HIS106
|
4.2
|
19.3
|
1.0
|
CG
|
A:HIS77
|
4.2
|
20.3
|
1.0
|
CG
|
A:HIS106
|
4.3
|
16.7
|
1.0
|
CG
|
A:GLU58
|
4.3
|
18.7
|
1.0
|
ND1
|
A:HIS73
|
4.4
|
19.8
|
1.0
|
HD1
|
A:PHE55
|
4.4
|
19.9
|
1.0
|
HE2
|
A:HIS25
|
4.4
|
16.7
|
1.0
|
HA
|
A:ASP111
|
4.4
|
16.8
|
1.0
|
N1
|
A:AZI120
|
4.4
|
17.4
|
1.0
|
CG
|
A:HIS73
|
4.4
|
20.2
|
1.0
|
NE2
|
A:HIS54
|
4.5
|
17.2
|
1.0
|
CB
|
A:ASP111
|
4.5
|
15.4
|
1.0
|
HB3
|
A:GLU58
|
4.5
|
19.2
|
1.0
|
HG2
|
A:GLU58
|
4.5
|
18.7
|
1.0
|
HG23
|
A:THR110
|
4.5
|
20.7
|
1.0
|
HE3
|
A:MET62
|
4.6
|
23.7
|
1.0
|
CE1
|
A:PHE55
|
4.6
|
21.4
|
1.0
|
HH
|
A:TYR114
|
4.6
|
15.7
|
1.0
|
N2
|
A:AZI120
|
4.7
|
19.3
|
1.0
|
CD1
|
A:PHE55
|
4.8
|
19.9
|
1.0
|
HE2
|
A:MET62
|
4.8
|
23.7
|
1.0
|
CE2
|
A:TYR114
|
4.9
|
15.6
|
1.0
|
CA
|
A:ASP111
|
4.9
|
16.8
|
1.0
|
HH2
|
A:TRP102
|
4.9
|
19.6
|
1.0
|
CB
|
A:GLU58
|
5.0
|
19.2
|
1.0
|
HD2
|
A:HIS54
|
5.0
|
16.9
|
1.0
|
|
Iron binding site 2 out
of 2 in 2mhr
Go back to
Iron Binding Sites List in 2mhr
Iron binding site 2 out
of 2 in the Structure of Myohemerythrin in the Azidomet State at 1.7(Slash)1.3 Angstroms Resolution
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Structure of Myohemerythrin in the Azidomet State at 1.7(Slash)1.3 Angstroms Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe119
b:17.2
occ:1.00
|
FE2
|
A:FEO119
|
0.0
|
17.2
|
1.0
|
HE2
|
A:HIS54
|
1.1
|
17.2
|
1.0
|
HE2
|
A:HIS25
|
1.3
|
16.7
|
1.0
|
O
|
A:FEO119
|
1.8
|
16.0
|
1.0
|
OD2
|
A:ASP111
|
2.1
|
15.9
|
1.0
|
N1
|
A:AZI120
|
2.1
|
17.4
|
1.0
|
NE2
|
A:HIS54
|
2.2
|
17.2
|
1.0
|
OE2
|
A:GLU58
|
2.2
|
18.7
|
1.0
|
NE2
|
A:HIS25
|
2.2
|
16.7
|
1.0
|
N2
|
A:AZI120
|
3.0
|
19.3
|
1.0
|
CE1
|
A:HIS54
|
3.0
|
17.5
|
1.0
|
CG
|
A:ASP111
|
3.1
|
16.3
|
1.0
|
CD
|
A:GLU58
|
3.1
|
14.4
|
1.0
|
CD2
|
A:HIS25
|
3.2
|
16.3
|
1.0
|
CD2
|
A:HIS54
|
3.2
|
16.9
|
1.0
|
HE1
|
A:HIS54
|
3.2
|
17.5
|
1.0
|
FE1
|
A:FEO119
|
3.2
|
17.6
|
1.0
|
HD2
|
A:HIS106
|
3.2
|
17.9
|
1.0
|
CE1
|
A:HIS25
|
3.2
|
17.4
|
1.0
|
HD2
|
A:HIS25
|
3.3
|
16.3
|
1.0
|
OD1
|
A:ASP111
|
3.3
|
16.3
|
1.0
|
HD2
|
A:HIS54
|
3.4
|
16.9
|
1.0
|
OE1
|
A:GLU58
|
3.4
|
18.6
|
1.0
|
HH
|
A:TYR114
|
3.5
|
15.7
|
1.0
|
HE1
|
A:HIS25
|
3.5
|
17.4
|
1.0
|
HG12
|
A:ILE107
|
3.7
|
15.7
|
1.0
|
HE2
|
A:HIS106
|
3.7
|
18.4
|
1.0
|
HE2
|
A:HIS77
|
3.8
|
19.0
|
1.0
|
N3
|
A:AZI120
|
4.0
|
21.6
|
1.0
|
HE1
|
A:PHE55
|
4.0
|
21.4
|
1.0
|
CD2
|
A:HIS106
|
4.1
|
17.9
|
1.0
|
ND1
|
A:HIS54
|
4.2
|
18.7
|
1.0
|
NE2
|
A:HIS106
|
4.3
|
18.4
|
1.0
|
OH
|
A:TYR114
|
4.3
|
15.7
|
1.0
|
CG
|
A:HIS54
|
4.3
|
17.9
|
1.0
|
CG
|
A:HIS25
|
4.3
|
15.6
|
1.0
|
CB
|
A:ASP111
|
4.3
|
15.4
|
1.0
|
ND1
|
A:HIS25
|
4.3
|
14.9
|
1.0
|
HE2
|
A:HIS73
|
4.4
|
19.9
|
1.0
|
HB3
|
A:ASP111
|
4.4
|
15.4
|
1.0
|
CG
|
A:GLU58
|
4.4
|
18.7
|
1.0
|
HE2
|
A:TYR114
|
4.6
|
15.6
|
1.0
|
HB2
|
A:GLU58
|
4.6
|
19.2
|
1.0
|
HG3
|
A:GLU58
|
4.6
|
18.7
|
1.0
|
HD1
|
A:PHE55
|
4.6
|
19.9
|
1.0
|
HB2
|
A:ASP111
|
4.6
|
15.4
|
1.0
|
NE2
|
A:HIS77
|
4.6
|
19.0
|
1.0
|
CG1
|
A:ILE107
|
4.7
|
15.7
|
1.0
|
HA
|
A:ILE107
|
4.7
|
15.1
|
1.0
|
HG13
|
A:ILE107
|
4.7
|
15.7
|
1.0
|
HD13
|
A:ILE28
|
4.8
|
17.8
|
1.0
|
CE1
|
A:PHE55
|
4.9
|
21.4
|
1.0
|
HD12
|
A:ILE107
|
5.0
|
16.9
|
1.0
|
|
Reference:
S.Sheriff,
W.A.Hendrickson,
J.L.Smith.
Structure of Myohemerythrin in the Azidomet State at 1.7/1.3 A Resolution. J.Mol.Biol. V. 197 273 1987.
ISSN: ISSN 0022-2836
PubMed: 3681996
DOI: 10.1016/0022-2836(87)90124-0
Page generated: Sun Aug 4 00:29:38 2024
|