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Iron in PDB 2mjd: Oxidized Yeast Adrenodoxin Homolog 1

Iron Binding Sites:

The binding sites of Iron atom in the Oxidized Yeast Adrenodoxin Homolog 1 (pdb code 2mjd). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Oxidized Yeast Adrenodoxin Homolog 1, PDB code: 2mjd:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 2mjd

Go back to Iron Binding Sites List in 2mjd
Iron binding site 1 out of 2 in the Oxidized Yeast Adrenodoxin Homolog 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Oxidized Yeast Adrenodoxin Homolog 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:0.0
occ:1.00
FE1 A:FES201 0.0 0.0 1.0
S2 A:FES201 2.2 0.0 1.0
S1 A:FES201 2.2 0.0 1.0
SG A:CYS47 2.3 0.0 1.0
SG A:CYS41 2.3 0.0 1.0
FE2 A:FES201 2.5 0.0 1.0
H A:SER48 2.8 0.0 1.0
HB3 A:CYS41 3.3 0.0 1.0
CB A:CYS47 3.5 0.0 1.0
CB A:CYS41 3.5 0.0 1.0
HB3 A:CYS47 3.5 0.0 1.0
HA A:CYS47 3.7 0.0 1.0
N A:SER48 3.7 0.0 1.0
HE2 A:MET72 3.8 0.0 1.0
HB2 A:CYS41 3.8 0.0 1.0
HD22 A:LEU27 3.8 0.0 1.0
CA A:CYS47 4.0 0.0 1.0
HB2 A:CYS50 4.0 0.0 1.0
HB3 A:CYS87 4.2 0.0 1.0
SG A:CYS50 4.2 0.0 1.0
HE3 A:MET72 4.2 0.0 1.0
C A:CYS47 4.3 0.0 1.0
SG A:CYS87 4.3 0.0 1.0
HB2 A:CYS47 4.4 0.0 1.0
CE A:MET72 4.5 0.0 1.0
CD2 A:LEU27 4.7 0.0 1.0
HA A:CYS50 4.7 0.0 1.0
HD21 A:LEU27 4.7 0.0 1.0
CB A:CYS50 4.7 0.0 1.0
CB A:CYS87 4.7 0.0 1.0
HB2 A:CYS87 4.8 0.0 1.0
HD23 A:LEU27 4.8 0.0 1.0
CA A:CYS41 4.9 0.0 1.0
CA A:SER48 4.9 0.0 1.0
HB3 A:SER48 4.9 0.0 1.0
HB2 A:SER48 4.9 0.0 1.0
H A:CYS50 5.0 0.0 1.0

Iron binding site 2 out of 2 in 2mjd

Go back to Iron Binding Sites List in 2mjd
Iron binding site 2 out of 2 in the Oxidized Yeast Adrenodoxin Homolog 1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Oxidized Yeast Adrenodoxin Homolog 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:0.0
occ:1.00
FE2 A:FES201 0.0 0.0 1.0
S2 A:FES201 2.2 0.0 1.0
S1 A:FES201 2.2 0.0 1.0
SG A:CYS87 2.3 0.0 1.0
SG A:CYS50 2.3 0.0 1.0
FE1 A:FES201 2.5 0.0 1.0
HA A:CYS50 2.8 0.0 1.0
HE2 A:MET72 3.1 0.0 1.0
HB2 A:CYS50 3.2 0.0 1.0
CB A:CYS50 3.2 0.0 1.0
CB A:CYS87 3.3 0.0 1.0
HB2 A:CYS87 3.3 0.0 1.0
HB3 A:CYS87 3.3 0.0 1.0
HB2 A:LEU85 3.4 0.0 1.0
CA A:CYS50 3.6 0.0 1.0
HD11 A:LEU85 3.9 0.0 1.0
HB3 A:CYS41 4.0 0.0 1.0
HE3 A:MET72 4.0 0.0 1.0
CE A:MET72 4.0 0.0 1.0
HD21 A:LEU27 4.0 0.0 1.0
SG A:CYS41 4.1 0.0 1.0
HD22 A:LEU27 4.1 0.0 1.0
H A:SER48 4.2 0.0 1.0
H A:CYS87 4.2 0.0 1.0
H A:CYS50 4.2 0.0 1.0
HB3 A:CYS50 4.2 0.0 1.0
HB2 A:CYS41 4.3 0.0 1.0
H A:GLY86 4.3 0.0 1.0
N A:CYS50 4.3 0.0 1.0
CB A:CYS41 4.4 0.0 1.0
HE1 A:MET72 4.5 0.0 1.0
CB A:LEU85 4.5 0.0 1.0
SG A:CYS47 4.5 0.0 1.0
CD2 A:LEU27 4.6 0.0 1.0
C A:CYS50 4.6 0.0 1.0
CA A:CYS87 4.7 0.0 1.0
O A:CYS50 4.7 0.0 1.0
N A:CYS87 4.8 0.0 1.0
N A:GLY86 4.8 0.0 1.0
HG A:LEU85 4.9 0.0 1.0
HD23 A:LEU73 4.9 0.0 1.0
CD1 A:LEU85 4.9 0.0 1.0
HA A:LEU85 4.9 0.0 1.0
HB3 A:LEU85 5.0 0.0 1.0
HB3 A:SER48 5.0 0.0 1.0
HD23 A:LEU27 5.0 0.0 1.0

Reference:

H.Webert, S.A.Freibert, A.Gallo, T.Heidenreich, U.Linne, S.Amlacher, E.Hurt, U.Muhlenhoff, L.Banci, R.Lill. Functional Reconstitution of Mitochondrial Fe/S Cluster Synthesis on ISU1 Reveals the Involvement of Ferredoxin. Nat Commun V. 5 5013 2014.
ISSN: ESSN 2041-1723
PubMed: 25358379
DOI: 10.1038/NCOMMS6013
Page generated: Sun Dec 13 14:49:18 2020

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