Iron in PDB 2n91: A Key Amino Acid in the Control of Different Functional Behavior Within the Triheme Cytochrome Family From Geobacter Sulfurreducens
Iron Binding Sites:
The binding sites of Iron atom in the A Key Amino Acid in the Control of Different Functional Behavior Within the Triheme Cytochrome Family From Geobacter Sulfurreducens
(pdb code 2n91). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 3 binding sites of Iron where determined in the
A Key Amino Acid in the Control of Different Functional Behavior Within the Triheme Cytochrome Family From Geobacter Sulfurreducens, PDB code: 2n91:
Jump to Iron binding site number:
1;
2;
3;
Iron binding site 1 out
of 3 in 2n91
Go back to
Iron Binding Sites List in 2n91
Iron binding site 1 out
of 3 in the A Key Amino Acid in the Control of Different Functional Behavior Within the Triheme Cytochrome Family From Geobacter Sulfurreducens
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of A Key Amino Acid in the Control of Different Functional Behavior Within the Triheme Cytochrome Family From Geobacter Sulfurreducens within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe101
b:1.0
occ:1.00
|
FE
|
A:HEM101
|
0.0
|
1.0
|
1.0
|
NE2
|
A:HIS17
|
1.9
|
1.0
|
1.0
|
NC
|
A:HEM101
|
1.9
|
1.0
|
1.0
|
NE2
|
A:HIS31
|
2.0
|
1.0
|
1.0
|
ND
|
A:HEM101
|
2.0
|
1.0
|
1.0
|
NB
|
A:HEM101
|
2.1
|
1.0
|
1.0
|
NA
|
A:HEM101
|
2.1
|
1.0
|
1.0
|
CD2
|
A:HIS17
|
2.9
|
1.0
|
1.0
|
CE1
|
A:HIS17
|
2.9
|
1.0
|
1.0
|
CD2
|
A:HIS31
|
3.0
|
1.0
|
1.0
|
C1C
|
A:HEM101
|
3.0
|
1.0
|
1.0
|
C4C
|
A:HEM101
|
3.0
|
1.0
|
1.0
|
CE1
|
A:HIS31
|
3.0
|
1.0
|
1.0
|
C1D
|
A:HEM101
|
3.0
|
1.0
|
1.0
|
C4B
|
A:HEM101
|
3.0
|
1.0
|
1.0
|
C4D
|
A:HEM101
|
3.1
|
1.0
|
1.0
|
C1B
|
A:HEM101
|
3.1
|
1.0
|
1.0
|
HD2
|
A:HIS17
|
3.1
|
1.0
|
1.0
|
HE1
|
A:HIS17
|
3.1
|
1.0
|
1.0
|
C1A
|
A:HEM101
|
3.1
|
1.0
|
1.0
|
C4A
|
A:HEM101
|
3.2
|
1.0
|
1.0
|
HD2
|
A:HIS31
|
3.2
|
1.0
|
1.0
|
HE1
|
A:HIS31
|
3.2
|
1.0
|
1.0
|
CHD
|
A:HEM101
|
3.4
|
1.0
|
1.0
|
CHC
|
A:HEM101
|
3.4
|
1.0
|
1.0
|
CHA
|
A:HEM101
|
3.5
|
1.0
|
1.0
|
CHB
|
A:HEM101
|
3.5
|
1.0
|
1.0
|
ND1
|
A:HIS17
|
4.0
|
1.0
|
1.0
|
CG
|
A:HIS17
|
4.0
|
1.0
|
1.0
|
ND1
|
A:HIS31
|
4.1
|
1.0
|
1.0
|
CG
|
A:HIS31
|
4.1
|
1.0
|
1.0
|
C2C
|
A:HEM101
|
4.2
|
1.0
|
1.0
|
C3C
|
A:HEM101
|
4.2
|
1.0
|
1.0
|
C2D
|
A:HEM101
|
4.3
|
1.0
|
1.0
|
HE22
|
A:GLN21
|
4.3
|
1.0
|
1.0
|
C3B
|
A:HEM101
|
4.3
|
1.0
|
1.0
|
C3D
|
A:HEM101
|
4.3
|
1.0
|
1.0
|
HE21
|
A:GLN21
|
4.3
|
1.0
|
1.0
|
C2B
|
A:HEM101
|
4.3
|
1.0
|
1.0
|
C2A
|
A:HEM101
|
4.4
|
1.0
|
1.0
|
C3A
|
A:HEM101
|
4.4
|
1.0
|
1.0
|
NE2
|
A:GLN21
|
4.4
|
1.0
|
1.0
|
H
|
A:GLY36
|
4.5
|
1.0
|
1.0
|
HB3
|
A:CYS30
|
4.9
|
1.0
|
1.0
|
HB2
|
A:CYS30
|
4.9
|
1.0
|
1.0
|
HD1
|
A:HIS17
|
4.9
|
1.0
|
1.0
|
HA
|
A:PRO35
|
4.9
|
1.0
|
1.0
|
|
Iron binding site 2 out
of 3 in 2n91
Go back to
Iron Binding Sites List in 2n91
Iron binding site 2 out
of 3 in the A Key Amino Acid in the Control of Different Functional Behavior Within the Triheme Cytochrome Family From Geobacter Sulfurreducens
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of A Key Amino Acid in the Control of Different Functional Behavior Within the Triheme Cytochrome Family From Geobacter Sulfurreducens within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe102
b:1.0
occ:1.00
|
FE
|
A:HEM102
|
0.0
|
1.0
|
1.0
|
NE2
|
A:HIS20
|
1.9
|
1.0
|
1.0
|
NC
|
A:HEM102
|
1.9
|
1.0
|
1.0
|
ND
|
A:HEM102
|
1.9
|
1.0
|
1.0
|
NE2
|
A:HIS55
|
2.0
|
1.0
|
1.0
|
NB
|
A:HEM102
|
2.1
|
1.0
|
1.0
|
NA
|
A:HEM102
|
2.1
|
1.0
|
1.0
|
CE1
|
A:HIS20
|
2.9
|
1.0
|
1.0
|
CD2
|
A:HIS20
|
2.9
|
1.0
|
1.0
|
C4C
|
A:HEM102
|
2.9
|
1.0
|
1.0
|
C1D
|
A:HEM102
|
2.9
|
1.0
|
1.0
|
CD2
|
A:HIS55
|
3.0
|
1.0
|
1.0
|
CE1
|
A:HIS55
|
3.0
|
1.0
|
1.0
|
C1C
|
A:HEM102
|
3.0
|
1.0
|
1.0
|
C4D
|
A:HEM102
|
3.0
|
1.0
|
1.0
|
C1A
|
A:HEM102
|
3.1
|
1.0
|
1.0
|
C4B
|
A:HEM102
|
3.1
|
1.0
|
1.0
|
HE1
|
A:HIS20
|
3.1
|
1.0
|
1.0
|
HD2
|
A:HIS20
|
3.2
|
1.0
|
1.0
|
C4A
|
A:HEM102
|
3.2
|
1.0
|
1.0
|
C1B
|
A:HEM102
|
3.2
|
1.0
|
1.0
|
HD2
|
A:HIS55
|
3.2
|
1.0
|
1.0
|
HE1
|
A:HIS55
|
3.2
|
1.0
|
1.0
|
CHD
|
A:HEM102
|
3.3
|
1.0
|
1.0
|
HE1
|
A:PHE15
|
3.4
|
1.0
|
1.0
|
CHA
|
A:HEM102
|
3.5
|
1.0
|
1.0
|
CHC
|
A:HEM102
|
3.5
|
1.0
|
1.0
|
CHB
|
A:HEM102
|
3.6
|
1.0
|
1.0
|
ND1
|
A:HIS20
|
4.0
|
1.0
|
1.0
|
CG
|
A:HIS20
|
4.0
|
1.0
|
1.0
|
ND1
|
A:HIS55
|
4.1
|
1.0
|
1.0
|
CG
|
A:HIS55
|
4.1
|
1.0
|
1.0
|
C3C
|
A:HEM102
|
4.2
|
1.0
|
1.0
|
C2D
|
A:HEM102
|
4.2
|
1.0
|
1.0
|
C2C
|
A:HEM102
|
4.2
|
1.0
|
1.0
|
C3D
|
A:HEM102
|
4.2
|
1.0
|
1.0
|
C2A
|
A:HEM102
|
4.4
|
1.0
|
1.0
|
C3B
|
A:HEM102
|
4.4
|
1.0
|
1.0
|
C3A
|
A:HEM102
|
4.4
|
1.0
|
1.0
|
C2B
|
A:HEM102
|
4.4
|
1.0
|
1.0
|
CE1
|
A:PHE15
|
4.5
|
1.0
|
1.0
|
HD2
|
A:PRO62
|
4.6
|
1.0
|
1.0
|
HB3
|
A:CYS51
|
4.7
|
1.0
|
1.0
|
HB3
|
A:CYS54
|
4.8
|
1.0
|
1.0
|
HD1
|
A:HIS20
|
4.9
|
1.0
|
1.0
|
HD1
|
A:PHE15
|
4.9
|
1.0
|
1.0
|
O
|
A:CYS54
|
5.0
|
1.0
|
1.0
|
|
Iron binding site 3 out
of 3 in 2n91
Go back to
Iron Binding Sites List in 2n91
Iron binding site 3 out
of 3 in the A Key Amino Acid in the Control of Different Functional Behavior Within the Triheme Cytochrome Family From Geobacter Sulfurreducens
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of A Key Amino Acid in the Control of Different Functional Behavior Within the Triheme Cytochrome Family From Geobacter Sulfurreducens within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe103
b:1.0
occ:1.00
|
FE
|
A:HEM103
|
0.0
|
1.0
|
1.0
|
NE2
|
A:HIS47
|
1.9
|
1.0
|
1.0
|
NC
|
A:HEM103
|
1.9
|
1.0
|
1.0
|
ND
|
A:HEM103
|
2.0
|
1.0
|
1.0
|
NE2
|
A:HIS69
|
2.0
|
1.0
|
1.0
|
NB
|
A:HEM103
|
2.1
|
1.0
|
1.0
|
NA
|
A:HEM103
|
2.1
|
1.0
|
1.0
|
CE1
|
A:HIS47
|
2.9
|
1.0
|
1.0
|
CD2
|
A:HIS47
|
2.9
|
1.0
|
1.0
|
CD2
|
A:HIS69
|
3.0
|
1.0
|
1.0
|
C4C
|
A:HEM103
|
3.0
|
1.0
|
1.0
|
C1D
|
A:HEM103
|
3.0
|
1.0
|
1.0
|
CE1
|
A:HIS69
|
3.0
|
1.0
|
1.0
|
C1C
|
A:HEM103
|
3.0
|
1.0
|
1.0
|
C4D
|
A:HEM103
|
3.0
|
1.0
|
1.0
|
C4B
|
A:HEM103
|
3.1
|
1.0
|
1.0
|
C1A
|
A:HEM103
|
3.1
|
1.0
|
1.0
|
HE1
|
A:HIS47
|
3.1
|
1.0
|
1.0
|
HD2
|
A:HIS47
|
3.2
|
1.0
|
1.0
|
C1B
|
A:HEM103
|
3.2
|
1.0
|
1.0
|
C4A
|
A:HEM103
|
3.2
|
1.0
|
1.0
|
HD2
|
A:HIS69
|
3.2
|
1.0
|
1.0
|
HE1
|
A:HIS69
|
3.2
|
1.0
|
1.0
|
CHD
|
A:HEM103
|
3.4
|
1.0
|
1.0
|
CHC
|
A:HEM103
|
3.4
|
1.0
|
1.0
|
CHA
|
A:HEM103
|
3.5
|
1.0
|
1.0
|
CHB
|
A:HEM103
|
3.6
|
1.0
|
1.0
|
HB3
|
A:LYS43
|
3.8
|
1.0
|
1.0
|
ND1
|
A:HIS47
|
4.0
|
1.0
|
1.0
|
CG
|
A:HIS47
|
4.0
|
1.0
|
1.0
|
HA
|
A:LYS43
|
4.1
|
1.0
|
1.0
|
ND1
|
A:HIS69
|
4.1
|
1.0
|
1.0
|
CG
|
A:HIS69
|
4.1
|
1.0
|
1.0
|
C3C
|
A:HEM103
|
4.2
|
1.0
|
1.0
|
C2D
|
A:HEM103
|
4.2
|
1.0
|
1.0
|
C2C
|
A:HEM103
|
4.2
|
1.0
|
1.0
|
C3D
|
A:HEM103
|
4.2
|
1.0
|
1.0
|
C3B
|
A:HEM103
|
4.4
|
1.0
|
1.0
|
C2A
|
A:HEM103
|
4.4
|
1.0
|
1.0
|
C2B
|
A:HEM103
|
4.4
|
1.0
|
1.0
|
C3A
|
A:HEM103
|
4.4
|
1.0
|
1.0
|
CB
|
A:LYS43
|
4.7
|
1.0
|
1.0
|
HB2
|
A:ALA46
|
4.8
|
1.0
|
1.0
|
HB2
|
A:LYS43
|
4.9
|
1.0
|
1.0
|
HD1
|
A:HIS47
|
4.9
|
1.0
|
1.0
|
CA
|
A:LYS43
|
4.9
|
1.0
|
1.0
|
HB3
|
A:CYS68
|
4.9
|
1.0
|
1.0
|
|
Reference:
J.M.Dantas,
T.Simoes,
L.Morgado,
C.Caciones,
A.P.Fernandes,
M.A.Silva,
M.Bruix,
P.R.Pokkuluri,
C.A.Salgueiro.
Unveiling the Structural Basis That Regulates the Energy Transduction Properties Within A Family of Triheme Cytochromes From Geobacter Sulfurreducens. J.Phys.Chem.B V. 120 10221 2016.
ISSN: ISSN 1089-5647
PubMed: 27603556
DOI: 10.1021/ACS.JPCB.6B07059
Page generated: Sun Aug 4 00:41:21 2024
|