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Iron in PDB 2nve: Soluble Domain of Rieske Iron Sulfur Protein

Enzymatic activity of Soluble Domain of Rieske Iron Sulfur Protein

All present enzymatic activity of Soluble Domain of Rieske Iron Sulfur Protein:
1.10.2.2;

Protein crystallography data

The structure of Soluble Domain of Rieske Iron Sulfur Protein, PDB code: 2nve was solved by D.K.Kolling, J.S.Brunzelle, S.Lhee, A.R.Crofts, S.K.Nair, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.00 / 1.50
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 70.648, 70.648, 54.717, 90.00, 90.00, 90.00
R / Rfree (%) 13.3 / 17.4

Iron Binding Sites:

The binding sites of Iron atom in the Soluble Domain of Rieske Iron Sulfur Protein (pdb code 2nve). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Soluble Domain of Rieske Iron Sulfur Protein, PDB code: 2nve:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 2nve

Go back to Iron Binding Sites List in 2nve
Iron binding site 1 out of 2 in the Soluble Domain of Rieske Iron Sulfur Protein


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Soluble Domain of Rieske Iron Sulfur Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe200

b:10.6
occ:1.00
FE1 A:FES200 0.0 10.6 1.0
S1 A:FES200 2.2 11.8 1.0
S2 A:FES200 2.2 11.6 1.0
SG A:CYS149 2.3 10.8 1.0
SG A:CYS129 2.3 9.4 1.0
FE2 A:FES200 2.7 11.8 1.0
CB A:CYS129 3.1 9.3 1.0
CB A:CYS149 3.2 10.9 1.0
CB A:HIS131 4.1 11.5 1.0
CB A:CYS134 4.3 11.5 1.0
CB A:CYS151 4.4 13.0 1.0
OG1 A:THR154 4.4 11.0 1.0
ND1 A:HIS131 4.4 12.3 1.0
ND1 A:HIS152 4.5 13.3 1.0
CA A:CYS149 4.5 11.1 1.0
CB A:THR154 4.6 10.1 1.0
CA A:CYS129 4.6 9.1 1.0
N A:HIS152 4.6 13.2 1.0
O A:CYS149 4.7 11.9 1.0
N A:LEU132 4.7 12.2 1.0
N A:CYS134 4.7 11.4 1.0
C A:CYS149 4.8 12.0 1.0
CG A:HIS131 4.8 11.4 1.0
N A:CYS151 5.0 13.3 1.0

Iron binding site 2 out of 2 in 2nve

Go back to Iron Binding Sites List in 2nve
Iron binding site 2 out of 2 in the Soluble Domain of Rieske Iron Sulfur Protein


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Soluble Domain of Rieske Iron Sulfur Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe200

b:11.8
occ:1.00
FE2 A:FES200 0.0 11.8 1.0
ND1 A:HIS152 2.1 13.3 1.0
ND1 A:HIS131 2.1 12.3 1.0
S2 A:FES200 2.2 11.6 1.0
S1 A:FES200 2.2 11.8 1.0
FE1 A:FES200 2.7 10.6 1.0
CG A:HIS152 3.1 13.4 1.0
CE1 A:HIS131 3.1 13.2 1.0
CE1 A:HIS152 3.1 14.4 1.0
CG A:HIS131 3.1 11.4 1.0
CB A:HIS152 3.4 13.0 1.0
CB A:HIS131 3.4 11.5 1.0
N A:HIS152 3.8 13.2 1.0
CB A:CYS151 4.1 13.0 1.0
N A:LEU132 4.1 12.2 1.0
CA A:HIS152 4.1 13.0 1.0
NE2 A:HIS152 4.2 15.2 1.0
CD2 A:HIS152 4.2 15.2 1.0
NE2 A:HIS131 4.2 13.9 1.0
CD2 A:HIS131 4.2 13.2 1.0
SG A:CYS129 4.4 9.4 1.0
C A:CYS151 4.5 13.2 1.0
CB A:LEU132 4.5 12.8 1.0
SG A:CYS149 4.6 10.8 1.0
CG A:PRO166 4.7 12.0 1.0
CA A:HIS131 4.7 11.3 1.0
C A:HIS131 4.8 12.0 1.0
CG A:LEU132 4.8 13.3 1.0
CA A:CYS151 4.8 13.4 1.0
CA A:LEU132 4.8 12.2 1.0
C A:HIS152 4.9 13.0 1.0
CD1 A:LEU132 4.9 14.8 1.0
OG1 A:THR154 5.0 11.0 1.0

Reference:

D.J.Kolling, J.S.Brunzelle, S.Lhee, A.R.Crofts, S.K.Nair. Atomic Resolution Structures of Rieske Iron-Sulfur Protein: Role of Hydrogen Bonds in Tuning the Redox Potential of Iron-Sulfur Clusters. Structure V. 15 29 2007.
ISSN: ISSN 0969-2126
PubMed: 17223530
DOI: 10.1016/J.STR.2006.11.012
Page generated: Sun Dec 13 14:49:55 2020

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