Iron in PDB 2o01: The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution

The structure of The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution, PDB code: 2o01 was solved by A.Amunts, O.Drory, N.Nelson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 3.40
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	120.054, 188.784, 127.518, 90.00, 95.19, 90.00
R / Rfree (%)	34.8 / 40.9

The structure of The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution also contains other interesting chemical elements:

Magnesium

(Mg)

168 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Iron atom in the The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution (pdb code 2o01). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution, PDB code: 2o01:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 12 in the The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe3101 b:25.3 occ:1.00 FE1 B:SF43101 0.0 25.3 1.0 S2 B:SF43101 2.3 22.1 1.0 SG B:CYS559 2.3 40.3 1.0 S4 B:SF43101 2.3 22.0 1.0 S3 B:SF43101 2.3 18.1 1.0 FE2 B:SF43101 2.6 21.5 1.0 FE4 B:SF43101 2.7 19.0 1.0 FE3 B:SF43101 2.7 14.5 1.0 N B:ASP560 2.7 38.2 1.0 N B:GLY561 2.8 37.7 1.0 CB B:CYS559 2.8 39.4 1.0 C B:ASP560 3.6 38.0 1.0 CA B:ASP560 3.6 38.1 1.0 C B:CYS559 3.6 38.7 1.0 SG B:CYS568 3.7 27.6 1.0 CA B:GLY561 3.7 37.4 1.0 CA B:CYS559 3.8 38.9 1.0 S1 B:SF43101 3.8 21.3 1.0 CB B:ASP560 4.5 37.8 1.0 CZ3 B:TRP667 4.6 27.1 1.0 C B:GLY561 4.7 37.3 1.0 CB B:CYS568 4.7 28.8 1.0 O B:ASP560 4.7 38.1 1.0 O B:CYS559 4.7 39.0 1.0 SG A:CYS590 4.8 29.9 1.0

Iron binding site 2 out of 12 in the The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe3101 b:21.5 occ:1.00 FE2 B:SF43101 0.0 21.5 1.0 S1 B:SF43101 2.3 21.3 1.0 S4 B:SF43101 2.3 22.0 1.0 S3 B:SF43101 2.3 18.1 1.0 SG B:CYS568 2.5 27.6 1.0 FE1 B:SF43101 2.6 25.3 1.0 FE4 B:SF43101 2.8 19.0 1.0 FE3 B:SF43101 2.8 14.5 1.0 CZ3 B:TRP667 2.9 27.1 1.0 CB B:CYS568 3.6 28.8 1.0 CH2 B:TRP667 3.7 26.2 1.0 CE3 B:TRP667 3.8 26.5 1.0 SG A:CYS590 3.9 29.9 1.0 S2 B:SF43101 3.9 22.1 1.0 CB B:CYS559 4.3 39.4 1.0 CD1 A:ILE727 4.3 38.8 1.0 SG B:CYS559 4.4 40.3 1.0 N B:GLY561 4.6 37.7 1.0 NH2 A:ARG731 4.8 43.0 1.0 CA B:CYS568 4.8 28.7 1.0 N B:ASP560 4.9 38.2 1.0 SG A:CYS581 4.9 34.3 1.0 CZ2 B:TRP667 5.0 24.9 1.0

Iron binding site 3 out of 12 in the The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe3101 b:14.5 occ:1.00 FE3 B:SF43101 0.0 14.5 1.0 S2 B:SF43101 2.3 22.1 1.0 S4 B:SF43101 2.3 22.0 1.0 S1 B:SF43101 2.3 21.3 1.0 FE4 B:SF43101 2.6 19.0 1.0 SG A:CYS581 2.7 34.3 1.0 FE1 B:SF43101 2.7 25.3 1.0 FE2 B:SF43101 2.8 21.5 1.0 CA B:GLY561 2.8 37.4 1.0 N B:GLY561 3.1 37.7 1.0 CD B:PRO562 3.3 36.9 1.0 C B:GLY561 3.5 37.3 1.0 SG A:CYS590 3.6 29.9 1.0 O A:ASP582 3.7 33.1 1.0 N B:PRO562 3.8 37.0 1.0 S3 B:SF43101 3.9 18.1 1.0 CB A:CYS581 4.2 34.4 1.0 O B:GLY561 4.4 37.4 1.0 C B:ASP560 4.4 38.0 1.0 SG B:CYS559 4.7 40.3 1.0 O A:THR589 4.7 30.2 1.0 C A:ASP582 4.7 32.9 1.0 CG B:PRO562 4.7 37.0 1.0 N A:ASP582 4.8 34.1 1.0 SG B:CYS568 4.9 27.6 1.0 CA B:PRO562 5.0 36.5 1.0 N B:ASP560 5.0 38.2 1.0

Iron binding site 4 out of 12 in the The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe3101 b:19.0 occ:1.00 FE4 B:SF43101 0.0 19.0 1.0 SG A:CYS590 2.2 29.9 1.0 S3 B:SF43101 2.3 18.1 1.0 S2 B:SF43101 2.3 22.1 1.0 S1 B:SF43101 2.3 21.3 1.0 FE3 B:SF43101 2.6 14.5 1.0 FE1 B:SF43101 2.7 25.3 1.0 FE2 B:SF43101 2.8 21.5 1.0 CB A:CYS590 3.5 31.2 1.0 SG A:CYS581 3.6 34.3 1.0 SG B:CYS559 3.6 40.3 1.0 CE3 B:TRP667 3.7 26.5 1.0 CZ3 B:TRP667 3.7 27.1 1.0 S4 B:SF43101 3.9 22.0 1.0 O A:THR589 4.3 30.2 1.0 CG2 B:ILE702 4.4 14.0 1.0 CB A:CYS581 4.5 34.4 1.0 CA A:CYS590 4.5 31.1 1.0 CB B:CYS559 4.6 39.4 1.0 N B:GLY561 4.7 37.7 1.0 C A:THR589 4.9 29.8 1.0 CA B:GLY561 4.9 37.4 1.0 N A:CYS590 4.9 30.4 1.0 SG B:CYS568 4.9 27.6 1.0

Iron binding site 5 out of 12 in the The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe3102 b:19.4 occ:1.00 FE1 C:SF43102 0.0 19.4 1.0 S2 C:SF43102 2.3 24.7 1.0 S4 C:SF43102 2.3 21.8 1.0 S3 C:SF43102 2.3 24.5 1.0 SG C:CYS48 2.5 37.3 1.0 FE4 C:SF43102 2.6 21.3 1.0 FE3 C:SF43102 2.6 22.0 1.0 FE2 C:SF43102 2.7 26.0 1.0 CB C:CYS48 3.2 38.6 1.0 O C:VAL49 3.6 42.2 1.0 CG1 C:VAL25 3.8 36.5 1.0 S1 C:SF43102 3.8 21.4 1.0 SG C:CYS21 4.3 41.7 1.0 CB C:VAL25 4.3 36.5 1.0 SG C:CYS54 4.4 46.7 1.0 C C:VAL49 4.6 41.8 1.0 CG2 C:VAL25 4.6 36.9 1.0 CA C:CYS48 4.6 38.8 1.0 N C:CYS51 4.7 43.0 1.0 CB C:CYS21 4.9 41.6 1.0 CB C:CYS51 4.9 43.4 1.0 CG2 C:THR45 4.9 34.8 1.0

Iron binding site 6 out of 12 in the The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe3102 b:26.0 occ:1.00 FE2 C:SF43102 0.0 26.0 1.0 S4 C:SF43102 2.3 21.8 1.0 S1 C:SF43102 2.3 21.4 1.0 S3 C:SF43102 2.3 24.5 1.0 FE3 C:SF43102 2.6 22.0 1.0 FE1 C:SF43102 2.7 19.4 1.0 FE4 C:SF43102 2.7 21.3 1.0 CB C:CYS54 3.2 44.7 1.0 SG C:CYS54 3.2 46.7 1.0 N C:LYS52 3.2 43.6 1.0 CA C:LYS52 3.4 43.9 1.0 C C:CYS51 3.6 43.4 1.0 S2 C:SF43102 3.9 24.7 1.0 N C:CYS51 3.9 43.0 1.0 C C:LYS52 4.0 44.4 1.0 O C:CYS51 4.1 43.1 1.0 CA C:CYS51 4.2 43.3 1.0 CB C:CYS51 4.2 43.4 1.0 O C:VAL49 4.3 42.2 1.0 N C:ARG53 4.4 44.6 1.0 CA C:CYS54 4.5 45.1 1.0 O C:ARG53 4.5 44.4 1.0 SG C:CYS48 4.6 37.3 1.0 C C:ARG53 4.6 44.5 1.0 N C:CYS54 4.6 44.6 1.0 SG C:CYS51 4.6 44.5 1.0 CG1 C:VAL65 4.6 39.7 1.0 CB C:LYS52 4.7 43.8 1.0 C C:GLY50 4.7 42.9 1.0 O C:LYS52 4.7 44.6 1.0 SG C:CYS21 4.9 41.7 1.0 CA C:GLY50 5.0 42.4 1.0

Iron binding site 7 out of 12 in the The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe3102 b:22.0 occ:1.00 FE3 C:SF43102 0.0 22.0 1.0 S1 C:SF43102 2.3 21.4 1.0 S4 C:SF43102 2.3 21.8 1.0 S2 C:SF43102 2.3 24.7 1.0 SG C:CYS54 2.5 46.7 1.0 CB C:CYS21 2.6 41.6 1.0 FE1 C:SF43102 2.6 19.4 1.0 FE2 C:SF43102 2.6 26.0 1.0 FE4 C:SF43102 2.7 21.3 1.0 SG C:CYS21 2.8 41.7 1.0 CA C:CYS21 3.7 41.9 1.0 CB C:CYS54 3.8 44.7 1.0 S3 C:SF43102 3.9 24.5 1.0 SG C:CYS51 4.1 44.5 1.0 CB C:CYS51 4.2 43.4 1.0 O C:ASP24 4.3 38.7 1.0 O C:ARG53 4.5 44.4 1.0 N C:CYS21 4.5 41.7 1.0 CG1 C:VAL25 4.6 36.5 1.0 CB C:VAL25 4.6 36.5 1.0 SG C:CYS48 4.7 37.3 1.0 CB C:CYS48 4.7 38.6 1.0 O C:VAL49 4.8 42.2 1.0 C C:CYS21 4.9 42.0 1.0 C C:CYS51 4.9 43.4 1.0 CA C:CYS54 5.0 45.1 1.0

Iron binding site 8 out of 12 in the The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe3102 b:21.3 occ:1.00 FE4 C:SF43102 0.0 21.3 1.0 O C:VAL49 2.2 42.2 1.0 S3 C:SF43102 2.2 24.5 1.0 S2 C:SF43102 2.3 24.7 1.0 S1 C:SF43102 2.3 21.4 1.0 CB C:CYS51 2.4 43.4 1.0 FE1 C:SF43102 2.6 19.4 1.0 N C:CYS51 2.6 43.0 1.0 FE2 C:SF43102 2.7 26.0 1.0 FE3 C:SF43102 2.7 22.0 1.0 CA C:CYS51 2.9 43.3 1.0 SG C:CYS21 3.1 41.7 1.0 SG C:CYS48 3.2 37.3 1.0 CG1 C:VAL49 3.4 39.2 1.0 C C:CYS51 3.4 43.4 1.0 C C:VAL49 3.5 41.8 1.0 SG C:CYS51 3.5 44.5 1.0 CB C:CYS48 3.5 38.6 1.0 N C:LYS52 3.7 43.6 1.0 C C:GLY50 3.8 42.9 1.0 S4 C:SF43102 3.9 21.8 1.0 O C:CYS51 4.1 43.1 1.0 CA C:GLY50 4.3 42.4 1.0 N C:GLY50 4.3 42.2 1.0 CB C:CYS21 4.3 41.6 1.0 CA C:CYS48 4.4 38.8 1.0 CA C:VAL49 4.5 40.8 1.0 CB C:VAL49 4.5 40.7 1.0 OG1 C:THR23 4.6 40.3 1.0 CA C:LYS52 4.8 43.9 1.0 SG C:CYS54 4.8 46.7 1.0 O C:GLY50 4.9 43.1 1.0

Iron binding site 9 out of 12 in the The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe3103 b:13.0 occ:1.00 FE1 C:SF43103 0.0 13.0 1.0 S3 C:SF43103 2.2 14.0 1.0 S4 C:SF43103 2.3 15.7 1.0 S2 C:SF43103 2.3 15.4 1.0 FE3 C:SF43103 2.7 10.5 1.0 FE2 C:SF43103 2.8 12.4 1.0 FE4 C:SF43103 2.8 12.6 1.0 CG1 C:ILE12 3.1 33.5 1.0 CG1 C:VAL18 3.4 39.2 1.0 CD1 C:ILE12 3.4 30.8 1.0 S1 C:SF43103 3.9 15.5 1.0 N C:ILE12 4.0 35.6 1.0 CB C:CYS11 4.2 37.3 1.0 CB C:VAL18 4.4 39.2 1.0 CB C:ILE12 4.4 34.9 1.0 CB C:ALA40 4.4 36.9 1.0 C C:CYS11 4.6 36.1 1.0 O C:ALA40 4.6 35.7 1.0 CA C:ILE12 4.7 34.9 1.0 SG C:CYS17 4.7 38.6 1.0 SG C:CYS58 4.8 42.3 1.0 CA C:CYS11 4.9 36.8 1.0

Iron binding site 10 out of 12 in the The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of The Structure of A Plant Photosystem I Supercomplex at 3.4 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe3103 b:12.4 occ:1.00 FE2 C:SF43103 0.0 12.4 1.0 S1 C:SF43103 2.2 15.5 1.0 S4 C:SF43103 2.3 15.7 1.0 S3 C:SF43103 2.3 14.0 1.0 FE3 C:SF43103 2.7 10.5 1.0 CB C:CYS11 2.7 37.3 1.0 FE1 C:SF43103 2.8 13.0 1.0 FE4 C:SF43103 2.9 12.6 1.0 SG C:CYS58 3.3 42.3 1.0 N C:CYS11 3.8 36.7 1.0 CA C:CYS11 3.8 36.8 1.0 O C:PRO59 3.9 37.8 1.0 S2 C:SF43103 3.9 15.4 1.0 SG C:CYS11 4.0 39.7 1.0 CB C:CYS58 4.1 40.3 1.0 O C:ASP9 4.2 37.0 1.0 OG1 C:THR60 4.3 35.7 1.0 N C:ILE12 4.3 35.6 1.0 CA C:CYS58 4.3 40.0 1.0 C C:CYS11 4.4 36.1 1.0 O C:TYR8 4.4 38.7 1.0 SG C:CYS17 4.8 38.6 1.0 C C:ASP9 4.8 37.4 1.0 C C:CYS58 4.8 38.9 1.0 C C:THR10 5.0 36.7 1.0 C C:PRO59 5.0 37.7 1.0

A.Amunts, O.Drory, N.Nelson. The Structure of A Plant Photosystem I Supercomplex at 3.4 A Resolution. Nature V. 447 58 2007.
ISSN: ISSN 0028-0836
PubMed: 17476261
DOI: 10.1038/NATURE05687