Atomistry » Iron » PDB 2nwf-2oof » 2o0g
Atomistry »
  Iron »
    PDB 2nwf-2oof »
      2o0g »

Iron in PDB 2o0g: Crystal Structure of the H-Nox Domain From Nostoc Sp. Pcc 7120 Complexed to Co

Protein crystallography data

The structure of Crystal Structure of the H-Nox Domain From Nostoc Sp. Pcc 7120 Complexed to Co, PDB code: 2o0g was solved by X.Ma, F.Van Den Akker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.10 / 2.51
Space group P 21 3
Cell size a, b, c (Å), α, β, γ (°) 123.629, 123.629, 123.629, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 22.8

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of the H-Nox Domain From Nostoc Sp. Pcc 7120 Complexed to Co (pdb code 2o0g). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of the H-Nox Domain From Nostoc Sp. Pcc 7120 Complexed to Co, PDB code: 2o0g:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 2o0g

Go back to Iron Binding Sites List in 2o0g
Iron binding site 1 out of 2 in the Crystal Structure of the H-Nox Domain From Nostoc Sp. Pcc 7120 Complexed to Co


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of the H-Nox Domain From Nostoc Sp. Pcc 7120 Complexed to Co within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe500

b:39.5
occ:1.00
FE A:HEM500 0.0 39.5 1.0
C A:CMO600 1.9 46.7 1.0
NC A:HEM500 2.0 32.7 1.0
NA A:HEM500 2.0 30.6 1.0
NB A:HEM500 2.1 39.1 1.0
ND A:HEM500 2.2 33.4 1.0
NE2 A:HIS105 2.2 40.7 1.0
CE1 A:HIS105 2.9 36.1 1.0
O A:CMO600 3.0 45.5 1.0
C1C A:HEM500 3.0 38.1 1.0
C1A A:HEM500 3.0 37.0 1.0
C4B A:HEM500 3.1 37.9 1.0
C4C A:HEM500 3.1 38.4 1.0
C4A A:HEM500 3.1 36.1 1.0
C4D A:HEM500 3.1 30.0 1.0
C1B A:HEM500 3.1 39.2 1.0
C1D A:HEM500 3.2 36.2 1.0
CHC A:HEM500 3.4 36.3 1.0
CD2 A:HIS105 3.4 39.7 1.0
CHA A:HEM500 3.4 35.0 1.0
CHD A:HEM500 3.5 39.7 1.0
CHB A:HEM500 3.5 37.5 1.0
ND1 A:HIS105 4.1 39.0 1.0
C2C A:HEM500 4.2 38.5 1.0
C3C A:HEM500 4.3 37.2 1.0
NE1 A:TRP74 4.3 35.8 1.0
C2A A:HEM500 4.3 31.5 1.0
C3B A:HEM500 4.3 42.8 1.0
C3A A:HEM500 4.3 34.2 1.0
C2B A:HEM500 4.3 40.6 1.0
C3D A:HEM500 4.4 36.4 1.0
C2D A:HEM500 4.4 34.4 1.0
CG A:HIS105 4.4 40.4 1.0
CE2 A:TRP74 4.9 33.6 1.0
CD1 A:TRP74 5.0 33.3 1.0

Iron binding site 2 out of 2 in 2o0g

Go back to Iron Binding Sites List in 2o0g
Iron binding site 2 out of 2 in the Crystal Structure of the H-Nox Domain From Nostoc Sp. Pcc 7120 Complexed to Co


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of the H-Nox Domain From Nostoc Sp. Pcc 7120 Complexed to Co within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe501

b:39.4
occ:1.00
FE B:HEM501 0.0 39.4 1.0
C B:CMO601 1.9 46.2 1.0
NC B:HEM501 2.0 34.4 1.0
NA B:HEM501 2.0 32.7 1.0
ND B:HEM501 2.1 32.0 1.0
NB B:HEM501 2.1 35.2 1.0
NE2 B:HIS105 2.2 42.3 1.0
O B:CMO601 3.0 44.8 1.0
C1A B:HEM501 3.0 37.3 1.0
C1C B:HEM501 3.0 37.3 1.0
CE1 B:HIS105 3.0 37.0 1.0
C4D B:HEM501 3.1 33.0 1.0
C4C B:HEM501 3.1 37.8 1.0
C4A B:HEM501 3.1 34.2 1.0
C1D B:HEM501 3.1 35.7 1.0
C4B B:HEM501 3.1 36.6 1.0
C1B B:HEM501 3.2 37.8 1.0
CD2 B:HIS105 3.3 42.2 1.0
CHA B:HEM501 3.4 31.8 1.0
CHD B:HEM501 3.4 38.9 1.0
CHC B:HEM501 3.4 39.6 1.0
CHB B:HEM501 3.5 35.6 1.0
ND1 B:HIS105 4.2 36.7 1.0
C2C B:HEM501 4.2 39.8 1.0
NE1 B:TRP74 4.2 36.5 1.0
C2A B:HEM501 4.3 34.8 1.0
C3C B:HEM501 4.3 39.0 1.0
C3A B:HEM501 4.3 32.5 1.0
C3D B:HEM501 4.3 34.0 1.0
C2D B:HEM501 4.3 32.6 1.0
C3B B:HEM501 4.4 41.8 1.0
CG B:HIS105 4.4 38.9 1.0
C2B B:HEM501 4.4 41.8 1.0
CE2 B:TRP74 4.9 36.8 1.0
CD1 B:TRP74 4.9 34.3 1.0

Reference:

X.Ma, N.Sayed, A.Beuve, F.Van Den Akker. No and Co Differentially Activate Soluble Guanylyl Cyclase Via A Heme Pivot-Bend Mechanism. Embo J. V. 26 578 2007.
ISSN: ISSN 0261-4189
PubMed: 17215864
DOI: 10.1038/SJ.EMBOJ.7601521
Page generated: Thu Jul 17 03:09:02 2025

Last articles

Fe in 2YXO
Fe in 2YRS
Fe in 2YXC
Fe in 2YNM
Fe in 2YVJ
Fe in 2YP1
Fe in 2YU2
Fe in 2YU1
Fe in 2YQB
Fe in 2YOO
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy