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Iron in PDB 2o1z: Plasmodium Vivax Ribonucleotide Reductase Subunit R2 (PV086155)

Protein crystallography data

The structure of Plasmodium Vivax Ribonucleotide Reductase Subunit R2 (PV086155), PDB code: 2o1z was solved by A.Dong, W.Tempel, W.Qiu, J.Lew, A.K.Wernimont, Y.H.Lin, A.Hassanali, M.Melone, Y.Zhao, P.Nordlund, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, M.Sundstrom, A.Bochkarev, R.Hui, J.D.Artz, M.Amani, Structural Genomicsconsortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.32 / 2.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 76.151, 79.978, 103.846, 90.00, 90.00, 90.00
R / Rfree (%) 21.8 / 28.5

Iron Binding Sites:

The binding sites of Iron atom in the Plasmodium Vivax Ribonucleotide Reductase Subunit R2 (PV086155) (pdb code 2o1z). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Plasmodium Vivax Ribonucleotide Reductase Subunit R2 (PV086155), PDB code: 2o1z:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 2o1z

Go back to Iron Binding Sites List in 2o1z
Iron binding site 1 out of 2 in the Plasmodium Vivax Ribonucleotide Reductase Subunit R2 (PV086155)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Plasmodium Vivax Ribonucleotide Reductase Subunit R2 (PV086155) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1000

b:54.7
occ:1.00
OE1 A:GLU225 2.3 32.2 1.0
ND1 A:HIS228 2.4 17.7 1.0
OE1 A:GLU191 2.7 38.1 1.0
OE1 A:GLU129 2.8 32.2 1.0
CD A:GLU225 2.9 31.0 1.0
OE2 A:GLU225 3.0 34.8 1.0
CG A:GLU191 3.2 32.9 1.0
CE1 A:HIS228 3.3 18.4 1.0
CD A:GLU191 3.4 35.5 1.0
CG A:HIS228 3.4 18.1 1.0
NE2 A:GLN125 3.6 23.5 1.0
CB A:HIS228 3.7 16.7 1.0
CD A:GLU129 3.8 27.5 1.0
CG A:GLU129 3.9 25.2 1.0
CG A:GLU225 4.3 26.5 1.0
CA A:GLU225 4.3 21.0 1.0
NE2 A:HIS228 4.5 20.0 1.0
CD2 A:HIS228 4.5 19.9 1.0
CB A:GLU225 4.6 24.1 1.0
CD A:GLN125 4.6 23.2 1.0
OE2 A:GLU191 4.6 36.6 1.0
CB A:GLU191 4.6 28.0 1.0
O A:HOH2071 4.7 41.2 1.0
CG A:GLN125 4.8 22.1 1.0
N A:GLU225 4.8 19.9 1.0
CE1 A:HIS132 4.9 14.5 1.0
OE2 A:GLU129 5.0 30.6 1.0

Iron binding site 2 out of 2 in 2o1z

Go back to Iron Binding Sites List in 2o1z
Iron binding site 2 out of 2 in the Plasmodium Vivax Ribonucleotide Reductase Subunit R2 (PV086155)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Plasmodium Vivax Ribonucleotide Reductase Subunit R2 (PV086155) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1001

b:48.2
occ:1.00
OE2 B:GLU225 2.1 30.1 1.0
OE1 B:GLU191 2.2 38.5 1.0
ND1 B:HIS228 2.4 19.1 1.0
OE2 B:GLU129 2.6 33.5 1.0
OE1 B:GLU129 2.8 32.5 1.0
CD B:GLU129 3.0 32.2 1.0
CE1 B:HIS228 3.1 21.3 1.0
CD B:GLU225 3.1 29.0 1.0
CD B:GLU191 3.2 38.2 1.0
CG B:HIS228 3.4 17.9 1.0
OE2 B:GLU191 3.5 42.9 1.0
O B:HOH1059 3.5 45.1 1.0
OE1 B:GLU225 3.6 33.1 1.0
NE2 B:GLN125 3.7 27.6 1.0
CB B:HIS228 3.8 15.0 1.0
NE2 B:HIS228 4.3 22.9 1.0
CD2 B:HIS228 4.4 20.4 1.0
CG B:GLU225 4.4 26.1 1.0
CG B:GLU129 4.5 29.2 1.0
CD B:GLN125 4.6 25.1 1.0
CG B:GLU191 4.6 34.4 1.0
CA B:GLU225 4.6 20.5 1.0
CG B:GLN125 4.6 24.9 1.0
CE1 B:HIS132 4.9 14.4 1.0
ND1 B:HIS132 5.0 13.6 1.0
CB B:GLU225 5.0 23.4 1.0

Reference:

A.Dong, W.Tempel, W.Qiu, J.Lew, A.K.Wernimont, Y.H.Lin, A.Hassanali, M.Melone, Y.Zhao, P.Nordlund, C.H.Arrowsmith, A.M.Edwards, J.Weigelt, M.Sundstrom, A.Bochkarev, R.Hui, J.D.Artz, M.Amani. Crystal Structure of Plasmodium Vivax Ribonucleotide Reductase Subunit R2 (PV086155) To Be Published.
Page generated: Sun Dec 13 14:50:10 2020

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