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Iron in PDB 2oc5: Crystal Structure of A Ferritin-Like Protein (PMT1231) From Prochlorococcus Marinus Str. Mit 9313 at 1.68 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Ferritin-Like Protein (PMT1231) From Prochlorococcus Marinus Str. Mit 9313 at 1.68 A Resolution, PDB code: 2oc5 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.24 / 1.68
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.350, 77.350, 116.890, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 20

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of A Ferritin-Like Protein (PMT1231) From Prochlorococcus Marinus Str. Mit 9313 at 1.68 A Resolution (pdb code 2oc5). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of A Ferritin-Like Protein (PMT1231) From Prochlorococcus Marinus Str. Mit 9313 at 1.68 A Resolution, PDB code: 2oc5:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 2oc5

Go back to Iron Binding Sites List in 2oc5
Iron binding site 1 out of 2 in the Crystal Structure of A Ferritin-Like Protein (PMT1231) From Prochlorococcus Marinus Str. Mit 9313 at 1.68 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of A Ferritin-Like Protein (PMT1231) From Prochlorococcus Marinus Str. Mit 9313 at 1.68 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:18.1
occ:0.80
O A:HOH322 1.9 24.1 1.0
OE1 A:GLU73 2.0 26.0 1.0
O A:HOH329 2.0 25.4 1.0
OE1 A:GLU45 2.1 22.6 1.0
O1 A:UNL304 2.1 34.1 1.0
ND1 A:HIS76 2.3 23.9 1.0
CD A:GLU45 3.0 26.2 1.0
CE1 A:HIS76 3.1 24.9 1.0
CD A:GLU73 3.1 26.0 1.0
O2 A:UNL304 3.1 34.1 1.0
FE A:FE302 3.2 18.6 0.8
OE2 A:GLU45 3.3 25.3 1.0
CG A:HIS76 3.4 25.6 1.0
O3 A:UNL304 3.4 28.9 1.0
OE2 A:GLU73 3.5 22.9 1.0
OE1 A:GLU157 3.6 33.2 0.5
CB A:HIS76 3.9 20.1 1.0
OE2 A:GLU157 3.9 41.9 0.5
CD A:GLU157 4.2 27.4 0.5
NE2 A:HIS76 4.3 20.9 1.0
CG A:GLU73 4.4 21.7 1.0
CG A:GLU45 4.4 22.9 1.0
O4 A:UNL304 4.4 27.6 1.0
CD2 A:HIS76 4.4 23.0 1.0
OE2 A:GLU157 4.5 41.0 0.5
CA A:GLU73 4.5 19.0 1.0
CE1 A:HIS160 4.6 26.3 1.0
CB A:GLU73 4.7 19.4 1.0
ND1 A:HIS160 4.7 25.7 1.0
O5 A:UNL304 4.7 27.2 1.0
CB A:GLU45 4.8 21.4 1.0
OE1 A:GLU128 4.8 23.2 1.0
CG A:GLU157 4.9 33.6 0.5
CA A:GLU45 4.9 19.9 1.0
CG1 A:VAL153 4.9 37.1 1.0

Iron binding site 2 out of 2 in 2oc5

Go back to Iron Binding Sites List in 2oc5
Iron binding site 2 out of 2 in the Crystal Structure of A Ferritin-Like Protein (PMT1231) From Prochlorococcus Marinus Str. Mit 9313 at 1.68 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of A Ferritin-Like Protein (PMT1231) From Prochlorococcus Marinus Str. Mit 9313 at 1.68 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe302

b:18.6
occ:0.80
O A:HOH322 2.0 24.1 1.0
OE2 A:GLU73 2.1 22.9 1.0
OE2 A:GLU128 2.3 22.1 1.0
O3 A:UNL304 2.3 28.9 1.0
OE1 A:GLU128 2.3 23.2 1.0
ND1 A:HIS160 2.3 25.7 1.0
CD A:GLU128 2.6 20.3 1.0
CD A:GLU73 3.0 26.0 1.0
CE1 A:HIS160 3.1 26.3 1.0
O2 A:UNL304 3.2 34.1 1.0
OE1 A:GLU73 3.2 26.0 1.0
FE A:FE301 3.2 18.1 0.8
O1 A:UNL304 3.4 34.1 1.0
CG A:HIS160 3.5 22.8 1.0
OE1 A:GLU157 3.7 33.2 0.5
CB A:HIS160 4.0 24.1 1.0
CG A:GLU128 4.1 18.7 1.0
NE2 A:HIS160 4.3 25.2 1.0
NE2 A:GLN123 4.3 21.9 1.0
CE2 A:TYR52 4.3 21.2 1.0
CG A:GLU73 4.4 21.7 1.0
O A:HOH329 4.4 25.4 1.0
CD A:GLU157 4.5 27.4 0.5
OH A:TYR52 4.5 21.0 1.0
CG A:GLU157 4.5 33.6 0.5
CD2 A:HIS160 4.5 24.5 1.0
O4 A:UNL304 4.6 27.6 1.0
OE2 A:GLU157 4.6 41.9 0.5
CE1 A:HIS76 4.7 24.9 1.0
CB A:ALA48 4.7 19.7 1.0
ND1 A:HIS76 4.7 23.9 1.0
CZ A:TYR52 4.9 20.3 1.0
CA A:GLU157 5.0 29.1 0.5

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sun Dec 13 14:50:15 2020

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