Iron in PDB 2ogi: Crystal Structure of A Putative Metal Dependent Phosphohydrolase (SAG1661) From Streptococcus Agalactiae Serogroup V at 1.85 A Resolution

The structure of Crystal Structure of A Putative Metal Dependent Phosphohydrolase (SAG1661) From Streptococcus Agalactiae Serogroup V at 1.85 A Resolution, PDB code: 2ogi was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.55 / 1.85
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	65.841, 52.535, 70.022, 90.00, 114.29, 90.00
R / Rfree (%)	17.2 / 22.9

The structure of Crystal Structure of A Putative Metal Dependent Phosphohydrolase (SAG1661) From Streptococcus Agalactiae Serogroup V at 1.85 A Resolution also contains other interesting chemical elements:

Chlorine

(Cl)

3 atoms

The binding sites of Iron atom in the Crystal Structure of A Putative Metal Dependent Phosphohydrolase (SAG1661) From Streptococcus Agalactiae Serogroup V at 1.85 A Resolution (pdb code 2ogi). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of A Putative Metal Dependent Phosphohydrolase (SAG1661) From Streptococcus Agalactiae Serogroup V at 1.85 A Resolution, PDB code: 2ogi:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the Crystal Structure of A Putative Metal Dependent Phosphohydrolase (SAG1661) From Streptococcus Agalactiae Serogroup V at 1.85 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of A Putative Metal Dependent Phosphohydrolase (SAG1661) From Streptococcus Agalactiae Serogroup V at 1.85 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe301 b:24.4 occ:1.00 O A:HOH406 2.0 21.6 1.0 OD1 A:ASP135 2.2 29.2 1.0 OD2 A:ASP59 2.2 26.8 1.0 NE2 A:HIS29 2.2 23.5 1.0 O3B A:GDP400 2.3 31.2 1.0 NE2 A:HIS58 2.3 28.9 1.0 CG A:ASP135 3.0 26.2 1.0 CG A:ASP59 3.1 30.4 1.0 CD2 A:HIS58 3.2 27.4 1.0 CD2 A:HIS29 3.2 28.0 1.0 CE1 A:HIS29 3.2 24.7 1.0 CE1 A:HIS58 3.3 26.2 1.0 OD2 A:ASP135 3.3 34.2 1.0 PB A:GDP400 3.4 32.2 1.0 OD1 A:ASP59 3.5 29.1 1.0 FE A:FE302 3.5 22.2 1.0 O2B A:GDP400 3.6 25.2 1.0 O3A A:GDP400 4.0 35.5 1.0 NH2 A:ARG141 4.2 44.0 1.0 CB A:ASP59 4.3 27.5 1.0 ND1 A:HIS29 4.3 22.9 1.0 CG A:HIS29 4.3 21.3 1.0 CG A:HIS58 4.4 24.5 1.0 CB A:ASP135 4.4 26.4 1.0 ND1 A:HIS58 4.4 28.7 1.0 NE2 A:HIS117 4.5 25.4 1.0 CD2 A:HIS117 4.7 29.3 1.0 O1B A:GDP400 4.7 33.3 1.0 CG2 A:VAL33 4.8 26.0 1.0 O1A A:GDP400 4.8 29.5 1.0 PA A:GDP400 4.9 32.6 1.0 CA A:ASP135 4.9 26.2 1.0 O A:ASP135 5.0 27.6 1.0

Iron binding site 2 out of 4 in the Crystal Structure of A Putative Metal Dependent Phosphohydrolase (SAG1661) From Streptococcus Agalactiae Serogroup V at 1.85 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of A Putative Metal Dependent Phosphohydrolase (SAG1661) From Streptococcus Agalactiae Serogroup V at 1.85 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe302 b:22.2 occ:1.00 O A:HOH406 2.0 21.6 1.0 NE2 A:HIS117 2.2 25.4 1.0 OD1 A:ASP59 2.2 29.1 1.0 O2B A:GDP400 2.2 25.2 1.0 NE2 A:HIS91 2.2 24.6 1.0 O1A A:GDP400 2.3 29.5 1.0 CD2 A:HIS117 3.1 29.3 1.0 CG A:ASP59 3.1 30.4 1.0 CD2 A:HIS91 3.2 27.4 1.0 PB A:GDP400 3.2 32.2 1.0 CE1 A:HIS91 3.2 27.2 1.0 CE1 A:HIS117 3.2 29.1 1.0 PA A:GDP400 3.3 32.6 1.0 OD2 A:ASP59 3.3 26.8 1.0 FE A:FE301 3.5 24.4 1.0 O3A A:GDP400 3.5 35.5 1.0 O3B A:GDP400 3.7 31.2 1.0 OG1 A:THR118 4.0 29.5 1.0 CD2 A:HIS58 4.2 27.4 1.0 CG A:HIS117 4.3 21.7 1.0 OD2 A:ASP135 4.3 34.2 1.0 ND1 A:HIS117 4.3 25.9 1.0 ND1 A:HIS91 4.3 24.8 1.0 CG A:HIS91 4.4 26.0 1.0 O2A A:GDP400 4.4 25.4 1.0 NE2 A:HIS58 4.4 28.9 1.0 O1B A:GDP400 4.5 33.3 1.0 O5' A:GDP400 4.5 34.9 1.0 CD A:LYS62 4.5 30.3 1.0 CB A:ASP59 4.6 27.5 1.0 NZ A:LYS62 4.7 32.8 1.0 CE A:LYS62 4.8 34.9 1.0 C5' A:GDP400 4.8 45.0 1.0 OD1 A:ASP135 4.9 29.2 1.0 CA A:ASP59 4.9 28.5 1.0 CG A:ASP135 4.9 26.2 1.0

Iron binding site 3 out of 4 in the Crystal Structure of A Putative Metal Dependent Phosphohydrolase (SAG1661) From Streptococcus Agalactiae Serogroup V at 1.85 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of A Putative Metal Dependent Phosphohydrolase (SAG1661) From Streptococcus Agalactiae Serogroup V at 1.85 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe301 b:21.7 occ:1.00 O B:HOH413 1.9 24.6 1.0 OD2 B:ASP59 2.2 23.8 1.0 NE2 B:HIS29 2.2 21.9 1.0 OD1 B:ASP135 2.2 27.0 1.0 NE2 B:HIS58 2.3 28.8 1.0 O3B B:GDP400 2.3 30.9 1.0 CG B:ASP135 3.1 27.3 1.0 CD2 B:HIS29 3.1 27.3 1.0 CD2 B:HIS58 3.1 26.7 1.0 CG B:ASP59 3.2 32.2 1.0 CE1 B:HIS29 3.2 31.9 1.0 CE1 B:HIS58 3.4 23.5 1.0 OD2 B:ASP135 3.4 31.4 1.0 PB B:GDP400 3.4 29.7 1.0 FE B:FE302 3.6 23.1 1.0 OD1 B:ASP59 3.6 32.8 1.0 O2B B:GDP400 3.7 26.9 1.0 NH2 B:ARG141 4.0 28.6 1.0 O3A B:GDP400 4.0 30.2 1.0 CG B:HIS29 4.3 24.8 1.0 O B:HOH517 4.3 50.0 1.0 ND1 B:HIS29 4.3 25.1 1.0 CG B:HIS58 4.3 27.1 1.0 CB B:ASP59 4.3 24.8 1.0 CB B:ASP135 4.4 27.0 1.0 ND1 B:HIS58 4.4 28.9 1.0 CG2 B:VAL33 4.7 22.1 1.0 O1B B:GDP400 4.7 30.1 1.0 NE2 B:HIS117 4.8 22.2 1.0 O1A B:GDP400 4.8 26.1 1.0 CD2 B:HIS117 4.8 26.5 1.0 O B:HOH465 4.9 40.0 1.0 CA B:ASP135 4.9 26.3 1.0 PA B:GDP400 4.9 28.4 1.0

Iron binding site 4 out of 4 in the Crystal Structure of A Putative Metal Dependent Phosphohydrolase (SAG1661) From Streptococcus Agalactiae Serogroup V at 1.85 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of A Putative Metal Dependent Phosphohydrolase (SAG1661) From Streptococcus Agalactiae Serogroup V at 1.85 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe302 b:23.1 occ:1.00 O1A B:GDP400 2.1 26.1 1.0 O B:HOH413 2.1 24.6 1.0 NE2 B:HIS91 2.2 21.1 1.0 OD1 B:ASP59 2.2 32.8 1.0 O2B B:GDP400 2.2 26.9 1.0 NE2 B:HIS117 2.3 22.2 1.0 CE1 B:HIS91 3.1 22.3 1.0 CG B:ASP59 3.1 32.2 1.0 CD2 B:HIS117 3.1 26.5 1.0 CD2 B:HIS91 3.2 25.1 1.0 PB B:GDP400 3.2 29.7 1.0 PA B:GDP400 3.3 28.4 1.0 CE1 B:HIS117 3.3 27.4 1.0 OD2 B:ASP59 3.3 23.8 1.0 O3A B:GDP400 3.5 30.2 1.0 FE B:FE301 3.6 21.7 1.0 O3B B:GDP400 3.8 30.9 1.0 OG1 B:THR118 4.0 27.7 1.0 CD2 B:HIS58 4.1 26.7 1.0 ND1 B:HIS91 4.2 20.4 1.0 OD2 B:ASP135 4.3 31.4 1.0 CG B:HIS91 4.3 18.6 1.0 O2A B:GDP400 4.3 30.1 1.0 CG B:HIS117 4.3 22.8 1.0 ND1 B:HIS117 4.4 28.8 1.0 NZ B:LYS62 4.5 30.6 1.0 O5' B:GDP400 4.5 32.8 1.0 NE2 B:HIS58 4.5 28.8 1.0 CB B:ASP59 4.5 24.8 1.0 O1B B:GDP400 4.6 30.1 1.0 CD B:LYS62 4.6 28.7 1.0 C5' B:GDP400 4.7 39.5 1.0 CA B:ASP59 4.9 27.4 1.0 O B:HIS58 4.9 28.1 1.0 CG B:ASP135 5.0 27.3 1.0 OD1 B:ASP135 5.0 27.0 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.